A spatial fingerprint of land-water linkage of biodiversity uncovered by remote sensing and environmental DNA

Aquatic and terrestrial ecosystems are tightly connected via spatial flows of organisms and resources. Such land-water linkages integrate biodiversity across ecosystems and suggest a spatial association of aquatic and terrestrial biodiversity. However, knowledge about the extent of this spatial association is limited. By combining satellite remote sensing (RS) and environmental DNA (eDNA) extraction from river water across a 740-km2 mountainous catchment, we identify a characteristic spatial land-water fingerprint. Specifically, we find a spatial association of riverine eDNA diversity with RS spectral diversity of terrestrial ecosystems upstream, peaking at a 400 m distance yet still detectable up to a 2.0 km radius. Our findings show that biodiversity patterns in rivers can be linked to the functional diversity of surrounding terrestrial ecosystems and provide a dominant scale at which these linkages are strongest. Such spatially explicit information is necessary for a functional understanding of land-water linkages

Integrated experimental and simulation analysis of stress and strain partitioning in dual phase steel

The mechanical behavior of multiphase steels is governed by the microscopic strain and stress partitioning behavior among microstructural constituents [1-3]. However, due to limitations in the characterization of the partitioning that takes place at the submicron scale, microstructure optimization of such alloys is typically based on evaluating the averaged response, referring to, for example, macroscopic stress–strain curves. Here, a coupled experimental–numerical methodology is presented and discussed to strengthen the integrated understanding of the microstructure and mechanical properties of complex alloys, enabling joint analyses of deformation-induced evolution of the microstructure, and the strain and stress distribution therein, down to submicron resolution. From the experiments, deformation-induced evolution of (i) the microstructure, and (ii) the local strain distribution are concurrently captured, employing in situ secondary electron imaging and electron backscatter diffraction (EBSD) (for the former), and microscopic-digital image correlation (for the latter) [3,4]. From the simulations, local strain as well as stress distributions are revealed, through full-field crystal plasticity (CP) simulations conducted with the advanced DAMASK spectral solver suitable for heterogeneous materials [5,6]. The simulated model is designed directly from the initial EBSD measurements, and the phase properties are obtained by additional inverse CP simulations of nanoindentation experiments carried out on the original microstructure. The experiments and simulations demonstrate good correlation in the proof-of-principle study conducted here on a martensite–ferrite dual-phase steel, and deviations are discussed in terms of opportunities and limitations of the techniques involved. C.C. Tasan et al. Strain localization and damage in dual phase steels investigated by coupled in-situ deformation experiments and crystal plasticity simulations, International Journal of Plasticity,63,198-210,2014 C.C. Tasan et al. An overview of dual-phase steels: advances in microstructure-oriented processing and micromechanically guided design, Annual Review of Materials Research,45,391-431,2015 D. Yan et al. High resolution in situ mapping of microstrain and microstructure evolution reveals damage resistance criteria in dual phase steels,Acta Materialia,96,399-409,2015 C.C. Tasan et al. Integrated experimental–simulation analysis of stress and strain partitioning in multiphase alloys,Acta Materialia,81,,386-400,2014 F. Roters, et al. 2012, DAMASK: The Düsseldorf Advanced Material Simulation Kit for studying crystal plasticity using an FE based or a spectral numerical solver, in Procedia IUTAM, Vol. III, pp. 3–10, Elsevier, Amsterdam. https://damask.mpie.d

Characterization of forest understory using multi-temporal full-waveform airborne laser scanning

Der Unterwuchs als Teil der Waldstruktur hat eine wichtige Funktion im Hinblick auf die Dynamik der Waldentwicklung. Allerdings ist die Charakterisierung des Unterwuchses mittels Fernerkundungsmethoden problematisch, da die Vegetationsdichte eine Erfassung der vertikalen Struktur stark limitiert. Unter Verwendung von flugzeuggestütztem, multi-temporalen Laserscanning ist es möglich, den Unterwuchs in einem dichten Laubwald zu detektieren und zu charakterisieren. Basierend auf den geometrischen Informationen der Laser-Punktwolke und den zugehörigen full-waveform Charakteristiken wurden folgende Unterwuchsklassen abgeleitet: vegetationsfreie Flächen, Streu, Unterwuchs 3 m. Für die Validierung wurde sowohl terrestrisches Laserscanning als auch eine umfangreiche Feldmessung entsprechend dem VALERI Ansatzes verwendet. Die Detektion des Unterwuchses erfolgte mit einer Genauigkeit von 78%; die Klassifikation erreichte eine Genauigkeit von 64%

Individual tree-based vs pixel-based approaches to mapping forest functional traits and diversity by remote sensing

Plant ecology and biodiversity research have increasingly incorporated trait-based approaches and remote sensing. Compared with traditional field survey (which typically samples individual trees), remote sensing enables quantifying functional traits over large contiguous areas, but assigning trait values to biological units such as species and individuals is difficult with pixel-based approaches. We used a subtropical forest landscape in China to compare an approach based on airborne LiDAR-delineated individual tree crowns (ITCs) with a pixel-based approach for assessing functional traits from remote sensing data. We compared trait distributions, trait–trait relationships and functional diversity metrics obtained by the ITC- and pixel-based approaches at changing pixel size and extent. We found that morphological traits derived from airborne laser scanning showed more differences between ITC- and pixel-based approaches than physiological traits estimated by airborne Pushbroom Hyperspectral Imager-3 (PHI-3) hyperspectral data. Pixel sizes approximating average tree crowns yielded similar results as ITCs, but 95th quantile height and foliage height diversity tended to be overestimated and leaf area index underestimated relative to ITC-based values. With increasing pixel size, the differences to ITC-based trait values became larger and less trait variance was captured, indicating information loss. The consistency of ITC- and pixel-based functional richness also decreased with increasing pixel size, and changed with the observed extent for functional diversity monitoring. We conclude that whereas ITC-based approaches in principle allow partitioning of variation between individuals, genotypes and species, high-resolution pixel-based approaches come close to this and can be suitable for assessing ecosystem-scale trait variation by weighting individuals and species according to coverage

Studies of the silencing of Baculovirus DNA binding protein

Baculovirus DNA binding protein (DBP) binds preferentially single-stranded DNA in vitro and colocalizes with viral DNA replication sites. Here, its putative role as viral replication factor has been addressed by RNA interference. Silencing of DBP in Autographa californica multiple nucleopolyhedrovirus-infected cells increased expression of LEF-3, LEF-4, and P35. In contrast, expression of the structural genes coding for P39 and polyhedrin was suppressed while expression of genes coding for P10 and GP64 was unaffected. In the absence of DBP, viral DNA replication sites were formed, indicating replication of viral DNA. Electron microscopy studies, however, revealed a loss of formation of polyhedra and virus envelopment, suggesting that the primary role of DBP is viral formation rather than viral DNA replication

Recovery of forest canopy parameters by inversion of multispectral LiDAR data

We describe the use of Bayesian inference techniques, notably Markov chain Monte Carlo (MCMC) and reversible jump MCMC (RJMCMC) methods, to recover forest structural and biochemical parameters from multispectral LiDAR (Light Detection and Ranging) data. We use a variable dimension, multi-layered model to represent a forest canopy or tree, and discuss the recovery of structure and depth profiles that relate to photochemical properties. We first demonstrate how simple vegetation indices such as the Normalized Differential Vegetation Index (NDVI), which relates to canopy biomass and light absorption, and Photochemical Reflectance Index (PRI) which is a measure of vegetation light use efficiency, can be measured from multispectral data. We further describe and demonstrate our layered approach on single wavelength real data, and on simulated multispectral data derived from real, rather than simulated, data sets. This evaluation shows successful recovery of a subset of parameters, as the complete recovery problem is ill-posed with the available data. We conclude that the approach has promise, and suggest future developments to address the current difficulties in parameter inversion

Improved methods for measuring forest landscape structure: LiDAR complements field-based habitat assessment

Conservation and monitoring of forest biodiversity requires reliable information about forest structure and composition at multiple spatial scales. However, detailed data about forest habitat characteristics across large areas are often incomplete due to difficulties associated with field sampling methods. To overcome this limitation we employed a nationally available light detection and ranging (LiDAR) remote sensing dataset to develop variables describing forest landscape structure across a large environmental gradient in Switzerland. Using a model species indicative of structurally rich mountain forests (hazel grouse Bonasa bonasia), we tested the potential of such variables to predict species occurrence and evaluated the additional benefit of LiDAR data when used in combination with traditional, sample plot-based field variables. We calibrated boosted regression trees(BRT) models for both variable sets separately and in combination, and compared the models' accuracies. While both field-based and LiDAR models performed well, combining the two data sources improved the accuracy of the species' habitat model. The variables retained from the two datasets held different types of information: field variables mostly quantified food resources and cover in the field and shrub layer, LiDAR variables characterized heterogeneity of vegetation structure which correlated with field variables describing the understory and ground vegetation. When combined with data on forest vegetation composition from field surveys, LiDAR provides valuable complementary information for encompassing species niches more comprehensively. Thus, LiDAR bridges the gap between precise, locally restricted field-data and coarse digital land cover information by reliably identifying habitat structure and quality across large areas

The Laegeren site: an augmented forest laboratory combining 3-D reconstruction and radiative transfer models for trait-based assessment of functional diversity

Given the increased pressure on forests and their diversity in the context of global change, new ways of monitoring diversity are needed. Remote sensing has the potential to inform essential biodiversity variables on the global scale, but validation of data and products, particularly in remote areas, is difficult. We show how radiative transfer (RT) models, parameterized with a detailed 3-D forest reconstruction based on laser scanning, can be used to upscale leaf-level information to canopy scale. The simulation approach is compared with actual remote sensing data, showing very good agreement in both the spectral and spatial domains. In addition, we compute a set of physiological and morphological traits from airborne imaging spectroscopy and laser scanning data and show how these traits can be used to estimate the functional richness of a forest at regional scale. The presented RT modeling framework has the potential to prototype and validate future spaceborne observation concepts aimed at informing variables of biodiversity, while the trait-based mapping of diversity could augment in situ networks of diversity, providing effective spatiotemporal gap filling for a comprehensive assessment of changes to diversity