Abundant bacteria in the proximal and distal intestine of healthy Siberian sturgeons (Acipenser baerii)

The gut microbiota plays a key role in animal health, including immune and metabolic homeostasis. Despite the economic relevance of the sturgeon, studies addressing the gut microbiome of this species are scarce and have focused only on the hindgut. The objective of this work was to use Illumina metabarcoding technology to compare the bacterial microbiomes of two different intestinal locations, the proximal intestine (small intestine) and the distal intestine (hindgut containing the spiral valve), of healthy Siberian sturgeons (Acipenser baerii) reared on two different farms in Spain. Although a high degree of interindividual variability was observed, certain differences between the anatomical parts and between the geographical locations were clear. The results show that the sequences corresponding to the most abundant taxa were the basis for clustering according to anatomical region (proximal and distal intestine), whereas the less abundant taxa were the basis for clustering according to the geographical location of the fish farms. Finally, the results also indicate the existence of certain bacteria that are present in the intestinal tracts of all the fish analyzed in this study; this information may be useful in future studies aiming to establish differences based upon fish health or disease

Raman phonons as a probe of disorder, fluctuations and local structure in doped and undoped orthorhombic and rhombohedral manganites

We present a rationalization of the Raman spectra of orthorhombic and rhombohedral, stoichiometric and doped, manganese perovskites. In particular we study RMnO3 (R= La, Pr, Nd, Tb, Ho, Er, Y and Ca) and the different phases of Ca or Sr doped RMnO3 compounds as well as cation deficient RMnO3. The spectra of manganites can be understood as combinations of two kinds of spectra corresponding to two structural configurations of MnO6 octahedra and independently of the average structure obtained by diffraction techniques. The main peaks of compounds with regular MnO6 octahedra, as CaMnO3, highly Ca doped LaMnO3 or the metallic phases of Ca or Sr doped LaMnO3, are bending and tilt MnO6 octahedra modes which correlate to R-O(1) bonds and Mn-O-Mn angles respectively. In low and optimally doped manganites, the intensity and width of the broad bands are related to the amplitude of the dynamic fluctuations produced by polaron hopping in the paramagnetic insulating regime. The activation energy, which is proportional to the polaron binding energy, is the measure of this amplitude. This study permits to detect and confirm the coexistence, in several compounds, of a paramagnetic matrix with lattice polaron together with regions without dynamic or static octahedron distortions, identical to the ferromagnetic metallic phase. We show that Raman spectroscopy is an excellent tool to obtain information on the local structure of the different micro or macro-phases present simultaneously in many manganites.Comment: Submitted to PR

Structure of ternary additive hard-sphere fluid mixtures

Monte Carlo simulations on the structural properties of ternary fluid mixtures of additive hard spheres are reported. The results are compared with those obtained from a recent analytical approximation [S. B. Yuste, A. Santos, and M. Lopez de Haro, J. Chem. Phys. 108, 3683 (1998)] to the radial distribution functions of hard-sphere mixtures and with the results derived from the solution of the Ornstein-Zernike integral equation with both the Martynov-Sarkisov and the Percus-Yevick closures. Very good agreement between the results of the first two approaches and simulation is observed, with a noticeable improvement over the Percus-Yevick predictions especially near contact.Comment: 11 pages, including 8 figures; A minor change; accepted for publication in PR

Growth and nanofabrication of all-perovskite superconducting/ferromagnetic/superconducting junctions

We fabricate and study experimentally all-perovskite-oxide superconductor/ferromagnetic insulator/superconductor (S/FI/S) tunnel junctions made out of the high-temperature cuprate superconductor YBa2Cu3O7−y (YBCO) and the colossal magnetoresistive manganite LaMnO3 (LMO) in the ferromagnetic insulator state. YBCO/LMO/YBCO heterostructures with different LMO thicknesses (5, 10, and 20 nm) are grown epitaxially via pulsed laser deposition. Nanoscale S/FI/S junctions with sizes down to 300 nm are made by three-dimensional nano-sculpturing with focused ion beam. Junctions with a thick (20 nm) LMO barrier exhibit a large negative magnetoresistance below TCurie∼160 K, typical for colossal magnetoresistive manganites, as well as a kink in the current-voltage characteristics at large bias (V∼1–2 Volts), attributed to Zener-type tunneling. However, they do not show a measurable Josephson current. On the contrary, junctions with the thinnest 5- nm LMO barrier exhibit a large supercurrent and no signs of magnetism. The latter may indicate the presence of pinholes due to thickness inhomogeneity and/or a ∼ 2 nm dead magnetic layer at the YBCO / LMO interface caused, e.g., by interdiffusion or strain. The junction with an intermediate 10-nm LMO barrier exhibited a desired S/FI/S junction behavior with significant negative magnetoresistance and signatures of a small Josephson current

Self-trapped Exciton and Franck-Condon Spectra Predicted in LaMnO3_3

Because the ground state has cooperative Jahn-Teller order, electronic excitations in LaMnO$_3$ are predicted to self-trap by local rearrangement of the lattice. The optical spectrum should show a Franck-Condon series, that is, a Gaussian envelope of vibrational sidebands. Existing data are reinterpreted in this way. The Raman spectrum is predicted to have strong multiphonon features.Comment: 5 pages with two embedded postscript figure

The impact of genetic adaptation on chimpanzee subspecies differentiation

Published: November 25, 2019Chimpanzees, humans' closest relatives, are in danger of extinction. Aside from direct human impacts such as hunting and habitat destruction, a key threat is transmissible disease. As humans continue to encroach upon their habitats, which shrink in size and grow in density, the risk of inter-population and cross-species viral transmission increases, a point dramatically made in the reverse with the global HIV/AIDS pandemic. Inhabiting central Africa, the four subspecies of chimpanzees differ in demographic history and geographical range, and are likely differentially adapted to their particular local environments. To quantitatively explore s genetic adaptation, we investigated the genic enrichment for SNPs highly differentiated between chimpanzee subspecies. Previous analyses of such patterns in human populations exhibited limited evidence of adaptation. In contrast, chimpanzees show evidence of recent positive selection, with differences among subspecies. Specifically, we observe strong evidence of recent selection in eastern chimpanzees, with highly differentiated SNPs being uniquely enriched in genic sites in a way that is expected under recent adaptation but not under neutral evolution or background selection. These sites are enriched for genes involved in immune responses to pathogens, and for genes inferred to differentiate the immune response to infection by simian immunodeficiency virus (SIV) in natural vs. non-natural host species. Conversely, central chimpanzees exhibit an enrichment of signatures of positive selection only at cytokine receptors, due to selective sweeps in CCR3, CCR9 and CXCR6 -paralogs of CCR5 and CXCR4, the two major receptors utilized by HIV to enter human cells. Thus, our results suggest that positive selection has contributed to the genetic and phenotypic differentiation of chimpanzee subspecies, and that viruses likely play a predominate role in this differentiation, with SIV being a likely selective agent. Interestingly, our results suggest that SIV has elicited distinctive adaptive responses in these two chimpanzee subspecies.Joshua M. Schmidt, Marc de Manuel, Tomas Marques-Bonet, Sergi Castellano, Aida M. André

Non-Extremal D-instantons and the AdS/CFT Correspondence

We investigate non-extremal D-instantons in an asymptotically $AdS_5 \times S^5$ background and the role they play in the $AdS_5 / CFT_4$ correspondence. We find that the holographic dual operators of non-extremal D-instanton configurations do not correspond to self-dual Yang-Mills instantons, and we compute explicitly the deviation from self-duality. Furthermore, a class of non-extremal D-instantons yield Euclidean axionic wormhole solutions with two asymptotic boundaries. After Wick rotating, this provides a playground for investigating holography in the presence of cosmological singularities in a closed universe.Comment: 30 pages, 3 figure

Lifetimes of image-potential states on copper surfaces

The lifetime of image states, which represent a key quantity to probe the coupling of surface electronic states with the solid substrate, have been recently determined for quantum numbers $n\le 6$ on Cu(100) by using time-resolved two-photon photoemission in combination with the coherent excitation of several states (U. H\"ofer et al, Science 277, 1480 (1997)). We here report theoretical investigations of the lifetime of image states on copper surfaces. We evaluate the lifetimes from the knowledge of the self-energy of the excited quasiparticle, which we compute within the GW approximation of many-body theory. Single-particle wave functions are obtained by solving the Schr\"odinger equation with a realistic one-dimensional model potential, and the screened interaction is evaluated in the random-phase approximation (RPA). Our results are in good agreement with the experimentally determined decay times.Comment: 4 pages, 1 figure, to appear in Phys. Rev. Let

Ages and Metallicities of Star Clusters and Surrounding Fields in the Outer Disk of the Large Magellanic Cloud

We present Washington system C,T_1 CMDs of 13 star clusters and their surrounding fields which lie in the outer parts of the LMC disk. Ages are determined by means of the magnitude difference between the giant branch clump and the turnoff, while metallicities are derived from the location of the giant and subgiant branches as compared to fiducial star clusters. We find that in most cases the stellar population of each star cluster is quite similar to that of the field where it is embedded. Three particular fields present remarkable properties: (i) The so far unique cluster ESO121-SC03 at ~9 Gyr has a surrounding field which shares the same properties. (ii) The field surrounding the far eastern intermediate age cluster OHSC37 is noteworthy in the sense that we do not detect any evidence of LMC stars. (iii) The fields of SL388 and SL509 present CMDs with a secondary clump ~0.45 mag fainter than the dominant intermediate age clump, suggesting a stellar population component located behind the LMC disk at a distance comparable to that of the SMC. The mean metallicity derived for the intermediate age outer disk clusters is =-0.7 and for their surrounding fields =-0.6. These values are significantly lower than found by Olszewski et al. (1991, AJ, 101, 515) for a sample of clusters of similar age, but are in good agreement with several recent studies. A few clusters stand out in the age--metallicity relation in the sense that they are intermediate age clusters at relatively low metallicity ([Fe/H]~-1).Comment: LaTeX, to be published in July, 1998 Astronomical Journa

Limits to the muon flux from WIMP annihilation in the center of the Earth with the AMANDA detector

A search for nearly vertical up-going muon-neutrinos from neutralino annihilations in the center of the Earth has been performed with the AMANDA-B10 neutrino detector. The data sample collected in 130.1 days of live-time in 1997, ~10^9 events, has been analyzed for this search. No excess over the expected atmospheric neutrino background is oberved. An upper limit at 90% confidence level on the annihilation rate of neutralinos in the center of the Earth is obtained as a function of the neutralino mass in the range 100 GeV-5000 GeV, as well as the corresponding muon flux limit.Comment: 14 pages, 11 figures. Version accepted for publication in Physical Review