LibCPIXE: a PIXE simulation open-source library for multilayered samples

Most particle induced X-ray emission (PIXE) data analysis codes are not focused on handling multilayered samples. We have developed an open-source library called "LibCPIXE", for PIXE data analysis. It is written in standard C and implements functions for simulating X-ray yields of PIXE spectra taken from arbitrary samples, including multilayered targets. The library is designed to be fast, portable, modular and scalable, as well as to facilitate its incorporation into any existing program. In order to demonstrate the capabilities of the library, a program called CPIXE was developed and used to analyze various real samples involving both bulk and layered samples. Just as the library, the CPIXE source code is freely available under the General Public License. We demonstrate that it runs both under GNU/Linux systems as well as under MS Windows. There is in principle no limitation to port it to other platforms

Breather lattice and its stabilization for the modified Korteweg-de Vries equation

We obtain an exact solution for the breather lattice solution of the modified Korteweg-de Vries (MKdV) equation. Numerical simulation of the breather lattice demonstrates its instability due to the breather-breather interaction. However, such multi-breather structures can be stabilized through the concurrent application of ac driving and viscous damping terms.Comment: 6 pages, 3 figures, Phys. Rev. E (in press

Biophysical Measurements of Cells, Microtubules, and DNA with an Atomic Force Microscope

Atomic force microscopes (AFMs) are ubiquitous in research laboratories and have recently been priced for use in teaching laboratories. Here we review several AFM platforms (Dimension 3000 by Digital Instruments, EasyScan2 by Nanosurf, ezAFM by Nanomagnetics, and TKAFM by Thorlabs) and describe various biophysical experiments that could be done in the teaching laboratory using these instruments. In particular, we focus on experiments that image biological materials and quantify biophysical parameters: 1) imaging cells to determine membrane tension, 2) imaging microtubules to determine their persistence length, 3) imaging the random walk of DNA molecules to determine their contour length, and 4) imaging stretched DNA molecules to measure the tensional force.Comment: 29 page preprint, 7 figures, 1 tabl

Quantum corrections to the ground state energy of a trapped Bose-Einstein condensate: A diffusion Monte Carlo calculation

The diffusion Monte Carlo method is applied to describe a trapped atomic Bose-Einstein condensate at zero temperature, fully quantum mechanically and nonperturbatively. For low densities, $n(0)a^3 \le 2 \cdot 10^{-3}$ [n(0): peak density, a: s-wave scattering length], our calculations confirm that the exact ground state energy for a sum of two-body interactions depends on only the atomic physics parameter a, and no other details of the two-body model potential. Corrections to the mean-field Gross-Pitaevskii energy range from being essentially negligible to about 20% for N=2-50 particles in the trap with positive s-wave scattering length a=100-10000 a.u.. Our numerical calculations confirm that inclusion of an additional effective potential term in the mean-field equation, which accounts for quantum fluctuations [see e.g. E. Braaten and A. Nieto, Phys. Rev. B 56}, 14745 (1997)], leads to a greatly improved description of trapped Bose gases.Comment: 7 pages, 4 figure

Critical behavior of weakly-disordered anisotropic systems in two dimensions

The critical behavior of two-dimensional (2D) anisotropic systems with weak quenched disorder described by the so-called generalized Ashkin-Teller model (GATM) is studied. In the critical region this model is shown to be described by a multifermion field theory similar to the Gross-Neveu model with a few independent quartic coupling constants. Renormalization group calculations are used to obtain the temperature dependence near the critical point of some thermodynamic quantities and the large distance behavior of the two-spin correlation function. The equation of state at criticality is also obtained in this framework. We find that random models described by the GATM belong to the same universality class as that of the two-dimensional Ising model. The critical exponent $\nu$ of the correlation length for the 3- and 4-state random-bond Potts models is also calculated in a 3-loop approximation. We show that this exponent is given by an apparently convergent series in $\epsilon=c-\frac{1}{2}$ (with $c$ the central charge of the Potts model) and that the numerical values of $\nu$ are very close to that of the 2D Ising model. This work therefore supports the conjecture (valid only approximately for the 3- and 4-state Potts models) of a superuniversality for the 2D disordered models with discrete symmetries.Comment: REVTeX, 24 pages, to appear in Phys.Rev.

Quantitative considerations in medium energy ion scattering depth profiling analysis of nanolayers

The high depth resolution capability of medium energy ion scattering (MEIS) is becoming increasingly relevant to the characterisation of nanolayers in e.g. microelectronics. In this paper we examine the attainable quantitative accuracy of MEIS depth profiling. Transparent but reliable analytical calculations are used to illustrate what can ultimately be achieved for dilute impurities in a silicon matrix and the significant element-dependence of the depth scale, for instance, is illustrated this way. Furthermore, the signal intensity-to-concentration conversion and its dependence on the depth of scattering is addressed. Notably, deviations from the Rutherford scattering cross section due to screening effects resulting in a non-coulombic interaction potential and the reduction of the yield owing to neutralization of the exiting, backscattered H+ and He+ projectiles are evaluated. The former mainly affects the scattering off heavy target atoms while the latter is most severe for scattering off light target atoms and can be less accurately predicted. However, a pragmatic approach employing an extensive data set of measured ion fractions for both H+ and He+ ions scattered off a range of surfaces, allows its parameterization. This has enabled the combination of both effects, which provides essential information regarding the yield dependence both on the projectile energy and the mass of the scattering atom. Although, absolute quantification, especially when using He+, may not always be achievable, relative quantification in which the sum of all species in a layer add up to 100%, is generally possible. This conclusion is supported by the provision of some examples of MEIS derived depth profiles of nanolayers. Finally, the relative benefits of either using H+ or He+ ions are briefly considered

The fossil bivalve Angulus benedeni benedeni: A potential seasonally resolved stable-isotope-based climate archive to investigate Pliocene temperatures in the southern North Sea basin

Bivalves record seasonal environmental changes in their shells, making them excellent climate archives. However, not every bivalve can be used for this end. The shells have to grow fast enough so that micrometre- to millimetre-sampling can resolve sub-annual changes. Here, we investigate whether the bivalve Angulus benedeni benedeni is suitable as a climate archive. For this, we use ca. 3-million-year-old specimens from the Piacenzian collected from a temporary outcrop in the Port of Antwerp area (Belgium). The subspecies is common in Pliocene North Sea basin deposits, but its lineage dates back to the late Oligocene and has therefore great potential as a high-resolution archive. A detailed assessment of the preservation of the shell material by micro-X-ray fluorescence, X-ray diffraction, and electron backscatter diffraction reveals that it is pristine and not affected by diagenetic processes. Oxygen isotope analysis and microscopy indicate that the species had a longevity of up to a decade or more and, importantly, that it grew fast and large enough so that seasonally resolved records across multiple years were obtainable from it. Clumped isotope analysis revealed a mean annual temperature of 13.5±3.8°C. The subspecies likely experienced slower growth during winter and thus may not have recorded temperatures year-round. This reconstructed mean annual temperature is 3.5°C warmer than the pre-industrial North Sea and in line with proxy and modelling data for this stratigraphic interval, further solidifying A. benedeni benedeni's use as a climate recorder. Our exploratory study thus reveals that Angulus benedeni benedeni fossils are indeed excellent climate archives, holding the potential to provide insight into the seasonality of several major climate events of the past ∼25 million years in northwestern Europe

Spin asymmetry A_1^d and the spin-dependent structure function g_1^d of the deuteron at low values of x and Q^2

We present a precise measurement of the deuteron longitudinal spin asymmetry A_1^d and of the deuteron spin-dependent structure function g_1^d at Q^2 < 1 GeV^2 and 4*10^-5 < x < 2.5*10^-2 based on the data collected by the COMPASS experiment at CERN during the years 2002 and 2003. The statistical precision is tenfold better than that of the previous measurement in this region. The measured A_1^d and g_1^d are found to be consistent with zero in the whole range of x.Comment: 17 pages, 10 figure

Measurement of the Tau Branching Fractions into Leptons

Using data collected with the L3 detector near the Z resonance, corresponding to an integrated luminosity of 150pb-1, the branching fractions of the tau lepton into electron and muon are measured to be B(tau->e nu nu) = (17.806 +- 0.104 (stat.) +- 0.076 (syst.)) %, B(tau->mu nu nu) = (17.342 +- 0.110 (stat.) +- 0.067 (syst.)) %. From these results the ratio of the charged current coupling constants of the muon and the electron is determined to be g_mu/g_e = 1.0007 +- 0.0051. Assuming electron-muon universality, the Fermi constant is measured in tau lepton decays as G_F = (1.1616 +- 0.0058) 10^{-5} GeV^{-2}. Furthermore, the coupling constant of the strong interaction at the tau mass scale is obtained as alpha_s(m_tau^2) = 0.322 +- 0.009 (exp.) +- 0.015 (theory)

Gluon polarization in the nucleon from quasi-real photoproduction of high-pT hadron pairs

We present a determination of the gluon polarization Delta G/G in the nucleon, based on the helicity asymmetry of quasi-real photoproduction events, Q^2<1(GeV/c)^2, with a pair of large transverse-momentum hadrons in the final state. The data were obtained by the COMPASS experiment at CERN using a 160 GeV polarized muon beam scattered on a polarized 6-LiD target. The helicity asymmetry for the selected events is = 0.002 +- 0.019(stat.) +- 0.003(syst.). From this value, we obtain in a leading-order QCD analysis Delta G/G=0.024 +- 0.089(stat.) +- 0.057(syst.) at x_g = 0.095 and mu^2 =~ 3 (GeV}/c)^2.Comment: 10 pages, 3 figure