Substrate quality and spontaneous revegetation of extracted peatland: case study of an abandoned Polish mountain bog

If peatland is left without any restoration treatments after mechanical peat extraction ceases, the process of secondary transformation of peat continues. The resulting changes in peat properties severely impede the recovery of vegetation on cutover peatland. The aim of this study was to assess how secondary transformation of peat affects spontaneous revegetation, and the relative importance of different factors in controlling the re-establishment of raised bog species on previously cutover peat surfaces. The study was conducted on two sectors of a raised bog in southern Poland where peat extraction ended either 20 or 30 years ago. Where the residual peat layer was thin (~ 40 cm or less) and the water table often dropped into the mineral substratum, the development of vascular plants (including trees) was favoured, and this further promoted the secondary transformation of peat. In such locations the vegetation tended towards a pine and birch community. Revegetation by Sphagnum and other raised bog species (Eriophorum vaginatum, Vaccinium uliginosum, Ledum palustre, Oxycoccus palustris) was associated with thicker residual peat and higher water table level which, in turn, were strongly correlated with hydrophysical properties of the soil. A species - environmental factor redundancy analysis (RDA) showed that any single factor (of those considered) was not important in determining the revegetation pattern, because of their intercorrelations. However, water table level appeared to be the most important abiotic factor in determining the degree of soil aeration and, consequently, the stage of secondary transformation attained by the peat

Thermodynamic parameters of bonds in glassy materials from viscosity-temperature relationships

Doremus's model of viscosity assumes that viscous flow in amorphous materials is mediated by broken bonds (configurons). The resulting equation contains four coefficients, which are directly related to the entropies and enthalpies of formation and motion of the configurons. Thus by fitting this viscosity equation to experimental viscosity data these enthalpy and entropy terms can be obtained. The non-linear nature of the equation obtained means that the fitting process is non-trivial. A genetic algorithm based approach has been developed to fit the equation to experimental viscosity data for a number of glassy materials, including SiO2, GeO2, B2O3, anorthite, diopside, xNa2O–(1-x)SiO2, xPbO–(1-x)SiO2, soda-lime-silica glasses, salol, and α-phenyl-o-cresol. Excellent fits of the equation to the viscosity data were obtained over the entire temperature range. The fitting parameters were used to quantitatively determine the enthalpies and entropies of formation and motion of configurons in the analysed systems and the activation energies for flow at high and low temperatures as well as fragility ratios using the Doremus criterion for fragility. A direct anti-correlation between fragility ratio and configuron percolation threshold, which determines the glass transition temperature in the analysed materials, was found

Measuring equilibrium properties in aging systems

We corroborate the idea of a close connection between replica symmetry breaking and aging in the linear response function for a large class of finite-dimensional systems with short-range interactions. In these system, characterized by a continuity condition with respect to weak random perturbations of the Hamiltonian, the ``fluctuation dissipation ratio'' in off-equilibrium dynamics should be equal to the static cumulative distribution function of the overlaps. This allows for an experimental measurement of the equilibrium order parameter function.Comment: 5 pages, LaTeX. The paper has been completely rewritten and shortene

Topologically disordered systems at the glass transition

The thermodynamic approach to the viscosity and fragility of amorphous oxides was used to determine the topological characteristics of the disordered network-forming systems. Instead of the disordered system of atoms we considered the congruent disordered system of interconnecting bonds. The Gibbs free energy of network-breaking defects (configurons) was found based on available viscosity data. Amorphous silica and germania were used as reference disordered systems for which we found an excellent agreement of calculated and measured glass transition temperatures. We reveal that the Hausdorff dimension of the system of bonds changes from Euclidian three-dimensional below to fractal 2.55 ± 0.05-dimensional geometry above the glass transition temperature

Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation

Many animals and protists depend on symbiotic sulfur-oxidizing bacteria as their main food source. These bacteria use energy from oxidizing inorganic sulfur compounds to make biomass autotrophically from CO2, serving as primary producers for their hosts. Here we describe a clade of nonautotrophic sulfur-oxidizing symbionts, “Candidatus Kentron,” associated with marine ciliates. They lack genes for known autotrophic pathways and have a carbon stable isotope fingerprint heavier than other symbionts from similar habitats. Instead, they have the potential to oxidize sulfur to fuel the uptake of organic compounds for heterotrophic growth, a metabolic mode called chemolithoheterotrophy that is not found in other symbioses. Although several symbionts have heterotrophic features to supplement primary production, in Kentron they appear to supplant it entirely.Since the discovery of symbioses between sulfur-oxidizing (thiotrophic) bacteria and invertebrates at hydrothermal vents over 40 years ago, it has been assumed that autotrophic fixation of CO2 by the symbionts drives these nutritional associations. In this study, we investigated “Candidatus Kentron,” the clade of symbionts hosted by Kentrophoros, a diverse genus of ciliates which are found in marine coastal sediments around the world. Despite being the main food source for their hosts, Kentron bacteria lack the key canonical genes for any of the known pathways for autotrophic carbon fixation and have a carbon stable isotope fingerprint that is unlike other thiotrophic symbionts from similar habitats. Our genomic and transcriptomic analyses instead found metabolic features consistent with growth on organic carbon, especially organic and amino acids, for which they have abundant uptake transporters. All known thiotrophic symbionts have converged on using reduced sulfur to gain energy lithotrophically, but they are diverse in their carbon sources. Some clades are obligate autotrophs, while many are mixotrophs that can supplement autotrophic carbon fixation with heterotrophic capabilities similar to those in Kentron. Here we show that Kentron bacteria are the only thiotrophic symbionts that appear to be entirely heterotrophic, unlike all other thiotrophic symbionts studied to date, which possess either the Calvin-Benson-Bassham or the reverse tricarboxylic acid cycle for autotrophy

The ecological diversity of vegetation within Urban Parks in the Dabrowski Basin (southern Poland)

The aim of this work is to present the diversity of flora in terms of ecological requirements. The research was conducted in the area of two urban parks in the area of two cities in southern Poland: Bedzin and Czeladz. These parks were established in different historical periods, and were planned (and are managed) differently. The results of the investigation have shown that the occurrence of 192 vascular species has been observed in the Gora Zamkowa (Castle Hill) Park, while in the Grabek park, 334 such species are known to exist. Such disparity is the result of the occurrence of micro-habitats and of the differences between the ways the two parks are managed. It is also due to these parks’ different functions. In the first case, the park area is protected by law. In the latter case, human activity has created a new ecological niche for organisms with a high degree of ecological tolerance. Based on the ecological values, the following groups of plants were distinguished: saxifrages grasslands, xerothermic grasslands, beech forests, alder forests and artificial planted trees. Analysis has shown that urban parks are potential places for growth various type of vegetation and also for increasing biodiversity, and can constitute particularly important hotspots for biodiversity in the cityscape, even if their primary role is recreational. As the study shows, the environment of a highly urbanized and industrialized region can also have a positive influence on ecological and floristic diversity

Frequency dependent specific heat of viscous silica

We apply the Mori-Zwanzig projection operator formalism to obtain an expression for the frequency dependent specific heat c(z) of a liquid. By using an exact transformation formula due to Lebowitz et al., we derive a relation between c(z) and K(t), the autocorrelation function of temperature fluctuations in the microcanonical ensemble. This connection thus allows to determine c(z) from computer simulations in equilibrium, i.e. without an external perturbation. By considering the generalization of K(t) to finite wave-vectors, we derive an expression to determine the thermal conductivity \lambda from such simulations. We present the results of extensive computer simulations in which we use the derived relations to determine c(z) over eight decades in frequency, as well as \lambda. The system investigated is a simple but realistic model for amorphous silica. We find that at high frequencies the real part of c(z) has the value of an ideal gas. c'(\omega) increases quickly at those frequencies which correspond to the vibrational excitations of the system. At low temperatures c'(\omega) shows a second step. The frequency at which this step is observed is comparable to the one at which the \alpha-relaxation peak is observed in the intermediate scattering function. Also the temperature dependence of the location of this second step is the same as the one of the $\alpha-$peak, thus showing that these quantities are intimately connected to each other. From c'(\omega) we estimate the temperature dependence of the vibrational and configurational part of the specific heat. We find that the static value of c(z) as well as \lambda are in good agreement with experimental data.Comment: 27 pages of Latex, 8 figure

Moist Static Energy Budget Analysis of Tropical Cyclone Intensification in High-Resolution Climate Models

Tropical cyclone intensification processes are explored in six high-resolution climate models. The analysis framework employs process-oriented diagnostics that focus on how convection, moisture, clouds, and related processes are coupled. These diagnostics include budgets of column moist static energy and the spatial variance of column moist static energy, where the column integral is performed between fixed pressure levels. The latter allows for the quantification of the different feedback processes responsible for the amplification of moist static energy anomalies associated with the organization of convection and cyclone spinup, including surface flux feedbacks and cloud-radiative feedbacks. Tropical cyclones (TCs) are tracked in the climate model simulations and the analysis is applied along the individual tracks and composited over many TCs. Two methods of compositing are employed: a composite over all TC snapshots in a given intensity range, and a composite over all TC snapshots at the same stage in the TC life cycle (same time relative to the time of lifetime maximum intensity for each storm). The radiative feedback contributes to TC development in all models, especially in storms of weaker intensity or earlier stages of development. Notably, the surface flux feedback is stronger in models that simulate more intense TCs. This indicates that the representation of the interaction between spatially varying surface fluxes and the developing TC is responsible for at least part of the intermodel spread in TC simulation