2,057 research outputs found
From Quantity to Quality: Massive Molecular Dynamics Simulation of Nanostructures under Plastic Deformation in Desktop and Service Grid Distributed Computing Infrastructure
The distributed computing infrastructure (DCI) on the basis of BOINC and
EDGeS-bridge technologies for high-performance distributed computing is used
for porting the sequential molecular dynamics (MD) application to its parallel
version for DCI with Desktop Grids (DGs) and Service Grids (SGs). The actual
metrics of the working DG-SG DCI were measured, and the normal distribution of
host performances, and signs of log-normal distributions of other
characteristics (CPUs, RAM, and HDD per host) were found. The practical
feasibility and high efficiency of the MD simulations on the basis of DG-SG DCI
were demonstrated during the experiment with the massive MD simulations for the
large quantity of aluminum nanocrystals (-). Statistical
analysis (Kolmogorov-Smirnov test, moment analysis, and bootstrapping analysis)
of the defect density distribution over the ensemble of nanocrystals had shown
that change of plastic deformation mode is followed by the qualitative change
of defect density distribution type over ensemble of nanocrystals. Some
limitations (fluctuating performance, unpredictable availability of resources,
etc.) of the typical DG-SG DCI were outlined, and some advantages (high
efficiency, high speedup, and low cost) were demonstrated. Deploying on DG DCI
allows to get new scientific from the simulated
of numerous configurations by harnessing sufficient computational power to
undertake MD simulations in a wider range of physical parameters
(configurations) in a much shorter timeframe.Comment: 13 pages, 11 pages (http://journals.agh.edu.pl/csci/article/view/106
A Signature of Passivity? An Explorative Study of the N3 Event- Related Potential Component in Passive Oddball Tasks
BackgroundMany passive oddball experiments show a sharp negative deflection N3 after P3b, peaking between 400 and 500 ms, but this wave has never been analyzed properly. We conducted five passive oddball experiments, in which the number of deviants (i.e., one or two), their alleged meaning, and their distinctiveness varied.ResultsMastoid- or common-referenced waveforms showed a fronto-central N3 in all experiments. The data were CSD (Current Source Density) transformed and underwent a Principal Component Analysis (PCA). The PCA revealed N3 containing two subcomponents with very stable peak latencies of about 415 and 455 ms, respectively. Both topography of the subcomponents and their variation with experimental conditions were very similar, indicating a midfrontal sink and a posterior temporal source. An analysis of P3a and P3b components replicated previously known effects.ConclusionWe discuss the similarities and differences between the passive N3 and other components including the MMN, N1, late positive Slow Wave, and reorienting negativity. We also make general hypotheses about a possible functional meaning of N3; on this basis, specific hypotheses are formulated and further experiments are suggested to test these hypotheses
Music in Research and Rehabilitation of Disorders of Consciousness: Psychological and Neurophysiological Foundations
According to a prevailing view, the visual system works by dissecting stimuli into primitives, whereas the auditory system processes simple and complex stimuli with their corresponding features in parallel. This makes musical stimulation particularly suitable for patients with disorders of consciousness (DoC), because the processing pathways related to complex stimulus features can be preserved even when those related to simple features are no longer available. An additional factor speaking in favor of musical stimulation in DoC is the low efficiency of visual stimulation due to prevalent maladies of vision or gaze fixation in DoC patients. Hearing disorders, in contrast, are much less frequent in DoC, which allows us to use auditory stimulation at various levels of complexity. The current paper overviews empirical data concerning the four main domains of brain functioning in DoC patients that musical stimulation can address: perception (e.g., pitch, timbre, and harmony), cognition (e.g., musical syntax and meaning), emotions, and motor functions. Music can approach basic levels of patients’ self-consciousness, which may even exist when all higher-level cognitions are lost, whereas music induced emotions and rhythmic stimulation can affect the dopaminergic reward-system and activity in the motor system respectively, thus serving as a starting point for rehabilitation
EEG correlates of working memory performance in females
BACKGROUND: The study investigates oscillatory brain activity during working memory (WM) tasks. The tasks employed varied in two dimensions. First, they differed in complexity from average to highly demanding. Second, we used two types of tasks, which required either only retention of stimulus set or retention and manipulation of the content. We expected to reveal EEG correlates of temporary storage and central executive components of WM and to assess their contribution to individual differences. RESULTS: Generally, as compared with the retention condition, manipulation of stimuli in WM was associated with distributed suppression of alpha1 activity and with the increase of the midline theta activity. Load and task dependent decrement of beta1 power was found during task performance. Beta2 power increased with the increasing WM load and did not significantly depend on the type of the task. At the level of individual differences, we found that the high performance (HP) group was characterized by higher alpha rhythm power. The HP group demonstrated task-related increment of theta power in the left anterior area and a gradual increase of theta power at midline area. In contrast, the low performance (LP) group exhibited a drop of theta power in the most challenging condition. HP group was also characterized by stronger desynchronization of beta1 rhythm over the left posterior area in the manipulation condition. In this condition, beta2 power increased in the HP group over anterior areas, but in the LP group over posterior areas. CONCLUSIONS: WM performance is accompanied by changes in EEG in a broad frequency range from theta to higher beta bands. The most pronounced differences in oscillatory activity between individuals with high and low WM performance can be observed in the most challenging WM task
Contralateral delay activity as a marker of visual working memory capacity: a multi-site registered replication
Visual working memory (VWM) is a temporary storage system capable of retaining information that can be accessed and manipulated by higher cognitive processes, thereby facilitating a wide range of cognitive functions. Electroencephalography (EEG) is used to understand the neural correlates of VWM with high temporal precision, and one commonly used EEG measure is an event-related potential called the contralateral delay activity (CDA). In a landmark study by Vogel and Machizawa (2004), the authors found that the CDA amplitude increases with the number of items stored in VWM and plateaus around three to four items, which is thought to represent the typical adult working memory capacity. Critically, this study also showed that the increase in CDA amplitude between two-item and four-item arrays correlated with individual subjects’ VWM performance. Although these results have been supported by subsequent studies, a recent study suggested that the number of subjects used in experiments investigating the CDA may not be sufficient to detect differences in set size and to provide a reliable account of the relationship between behaviorally measured VWM capacity and the CDA amplitude. To address this, the current study, as part of the #EEGManyLabs project, aims to conduct a multi-site replication of Vogel and Machizawa's (2004) seminal study on a large sample of participants, with a pre-registered analysis plan. Through this, our goal is to contribute to deepening our understanding of the neural correlates of visual working memory
Geophysical and atmospheric evolution of habitable planets
The evolution of Earth-like habitable planets is a complex process that depends on the geodynamical and geophysical environments. In particular, it is necessary that plate tectonics remain active over billions of years. These geophysically active environments are strongly coupled to a planet's host star parameters, such as mass, luminosity and activity, orbit location of the habitable zone, and the planet's initial water inventory. Depending on the host star's radiation and particle flux evolution, the composition in the thermosphere, and the availability of an active magnetic dynamo, the atmospheres of Earth-like planets within their habitable zones are differently affected due to thermal and nonthermal escape processes. For some planets, strong atmospheric escape could even effect the stability of the atmosphere
Good scientific practice in MEEG Research: Progress and Perspectives
Good Scientific Practice (GSP) refers to both explicit and implicit rules, recommendations, and guidelines that help scientists to produce work that is of the highest quality at any given time, and to efficiently share that work with the community for further scrutiny or utilization.For experimental research using magneto- and electroencephalography (MEEG), GSP includes specific standards and guidelines for technical competence, which are periodically updated and adapted to new findings. However, GSP also needs to be periodically revisited in a broader light. At the LiveMEEG 2020 conference, a reflection on GSP was fostered that included explicitly documented guidelines and technical advances, but also emphasized intangible GSP: a general awareness of personal, organizational, and societal realities and how they can influence MEEG research.This article provides an extensive report on most of the LiveMEEG contributions and new literature, with the additional aim to synthesize ongoing cultural changes in GSP. It first covers GSP with respect to cognitive biases and logical fallacies, pre-registration as a tool to avoid those and other early pitfalls, and a number of resources to enable collaborative and reproducible research as a general approach to minimize misconceptions. Second, it covers GSP with respect to data acquisition, analysis, reporting, and sharing, including new tools and frameworks to support collaborative work. Finally, GSP is considered in light of ethical implications of MEEG research and the resulting responsibility that scientists have to engage with societal challenges.Considering among other things the benefits of peer review and open access at all stages, the need to coordinate larger international projects, the complexity of MEEG subject matter, and today's prioritization of fairness, privacy, and the environment, we find that current GSP tends to favor collective and cooperative work, for both scientific and for societal reasons
X-ray polarimetry reveals the magnetic field topology on sub-parsec scales in Tycho's supernova remnant
Supernova remnants are commonly considered to produce most of the Galactic
cosmic rays via diffusive shock acceleration. However, many questions about the
physical conditions at shock fronts, such as the magnetic-field morphology
close to the particle acceleration sites, remain open. Here we report the
detection of a localized polarization signal from some synchrotron X-ray
emitting regions of Tycho's supernova remnant made by the Imaging X-ray
Polarimetry Explorer. The derived polarization degree of the X-ray synchrotron
emission is 9+/-2% averaged over the whole remnant, and 12+/-2% at the rim,
higher than the 7-8% polarization value observed in the radio band. In the west
region the polarization degree is 23+/-4%. The X-ray polarization degree in
Tycho is higher than for Cassiopeia A, suggesting a more ordered magnetic-field
or a larger maximum turbulence scale. The measured tangential polarization
direction corresponds to a radial magnetic field, and is consistent with that
observed in the radio band. These results are compatible with the expectation
of turbulence produced by an anisotropic cascade of a radial magnetic-field
near the shock, where we derive a magnetic-field amplification factor of
3.4+/-0.3. The fact that this value is significantly smaller than those
expected from acceleration models is indicative of highly anisotropic
magnetic-field turbulence, or that the emitting electrons either favor regions
of lower turbulence, or accumulate close to where the magnetic-field
orientation is preferentially radially oriented due to hydrodynamical
instabilities.Comment: 31 pages, 7 figures, 3 tables. Accepted for publication in ApJ.
Revised versio
Observations of 4U 1626-67 with the Imaging X-ray Polarimetry Explorer
We present measurements of the polarization of X-rays in the 2-8 keV band
from the pulsar in the ultracompact low mass X-ray binary 4U1626-67 using data
from the Imaging X-ray Polarimetry Explorer (IXPE). The 7.66 s pulsations were
clearly detected throughout the IXPE observations as well as in the NICER soft
X-ray observations, which we use as the basis for our timing analysis and to
constrain the spectral shape over 0.4-10 keV energy band. Chandra HETGS
high-resolution X-ray spectra were also obtained near the times of the IXPE
observations for firm spectral modeling. We find an upper limit on the
pulse-averaged linear polarization of <4% (at 95% confidence). Similarly, there
was no significant detection of polarized flux in pulse phase intervals when
subdividing the bandpass by energy. However, spectropolarimetric modeling over
the full bandpass in pulse phase intervals provide a marginal detection of
polarization of the power-law spectral component at the 4.8 +/- 2.3% level (90%
confidence). We discuss the implications concerning the accretion geometry onto
the pulsar, favoring two-component models of the pulsed emission.Comment: 19 pages, 7 figures, 7 tables; accepted for publication in the
Astrophysical Journa
IXPE and XMM-Newton observations of the Soft Gamma Repeater SGR 1806-20
Recent observations with the Imaging X-ray Polarimetry Explorer (IXPE) of two
anomalous X-ray pulsars provided evidence that X-ray emission from magnetar
sources is strongly polarized. Here we report on the joint IXPE and XMM-Newton
observations of the soft {\gamma}-repeater SGR 1806-20. The spectral and timing
properties of SGR 1806-20 derived from XMM-Newton data are in broad agreement
with previous measurements; however, we found the source at an all-time-low
persistent flux level. No significant polarization was measured apart from the
4-5 keV energy range, where a probable detection with PD=31.6\pm 10.5% and
PA=-17.6\pm 15 deg was obtained. The resulting polarization signal, together
with the upper limits we derive at lower and higher energies 2-4 and 5-8 keV,
respectively) is compatible with a picture in which thermal radiation from the
condensed star surface is reprocessed by resonant Compton scattering in the
magnetosphere, similar to what proposed for the bright magnetar 4U 0142+61.Comment: 11 pages, 3 figures, accepted for publication in Ap
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