Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus Models

Maize starch plays a critical role in food processing and industrial application. The pasting properties, the most important starch characteristics, have enormous influence on fabrication property, flavor characteristics, storage, cooking, and baking. Understanding the genetic basis of starch pasting properties will be beneficial for manipulation of starch properties for a given purpose. Genome-wide association studies (GWAS) are becoming a powerful tool for dissecting the complex traits. Here, we carried out GWAS for seven pasting properties of maize starch with a panel of 230 inbred lines and 145,232 SNPs using one single-locus method, genome-wide efficient mixed model association (GEMMA), and three multi-locus methods, FASTmrEMMA, FarmCPU, and LASSO. We totally identified 60 quantitative trait nucleotides (QTNs) for starch pasting properties with these four GWAS methods. FASTmrEMMA detected the most QTNs (29), followed by FarmCPU (19) and LASSO (12), GEMMA detected the least QTNs (7). Of these QTNs, seven QTNs were identified by more than one method simultaneously. We further investigated locations of these significantly associated QTNs for possible candidate genes. These candidate genes and significant QTNs provide the guidance for further understanding of molecular mechanisms of starch pasting properties. We also compared the statistical powers and Type I errors of the four GWAS methods using Monte Carlo simulations. The results suggest that the multi-locus method is more powerful than the single-locus method and a combination of these multi-locus methods could help improve the detection power of GWAS

Increased recruitment of endogenous stem cells and chondrogenic differentiation by a composite scaffold containing bone marrow homing peptide for cartilage regeneration

Even small cartilage defects could finally degenerate to osteoarthritis if left untreated, owing to the poor self-healing ability of articular cartilage. Stem cell transplantation has been well implemented as a common approach in cartilage tissue engineering but has technical complexity and safety concerns. The stem cell homing-based technique emerged as an alternative promising therapy for cartilage repair to overcome traditional limitations. In this study, we constructed a composite hydrogel scaffold by combining an oriented acellular cartilage matrix (ACM) with a bone marrow homing peptide (BMHP)-functionalized self-assembling peptide (SAP). We hypothesized that increased recruitment of endogenous stem cells by the composite scaffold could enhance cartilage regeneration. Methods: To test our hypothesis, in vitro proliferation, attachment and chondrogenic differentiation of rabbit mesenchymal stem cells (MSCs) were tested to confirm the bioactivities of the functionalized peptide hydrogel. The composite scaffold was then implanted into full-thickness cartilage defects on rabbit knee joints for cartilage repair, in comparison with microfracture or other sample groups. Stem cell recruitment was monitored by dual labeling with CD29 and CD90 under confocal microcopy at 1 week after implantation, followed by chondrogenic differentiation examined by qRT-PCR. Repaired tissue of the cartilage defects was evaluated by histological and immunohistochemistry staining, microcomputed tomography (micro-CT) and magnetic resonance imaging (MRI) at 3 and 6 months post-surgery. Macroscopic and histological scoring was done to evaluate the optimal in vivo repair outcomes of this composite scaffold. Results: The functionalized SAP hydrogels could stimulate rabbit MSC proliferation, attachment and chondrogenic differentiation during in vitro culture. At 7 days after implantation, increased recruitment of MSCs based on CD29(+)/CD90(+) double-positive cells was found in vivo in the composite hydrogel scaffold, as well as upregulation of cartilage-associated genes (aggrecan, Sox9 and type II collagen). After 3 and 6 months post-surgery, the articular cartilage defect in the composite scaffold-treated group was fully covered with cartilage-like tissue with a smooth surface, which was similar to the surrounding native cartilage, according to the results of histological and immunohistochemistry staining, micro-CT and MRI analysis. Macroscopic and histological scoring confirmed that the quality of cartilage repair was significantly improved with implantation of the composite scaffold at each timepoint, in comparison with microfracture or other sample groups. Conclusion: Our findings demonstrated that the composite scaffold could enhance endogenous stem cell homing and chondrogenic differentiation and significantly improve the therapeutic outcome of chondral defects. The present study provides a promising approach for in vivo cartilage repair without cell transplantation. Optimization of this strategy may offer great potential and benefits for clinical application in the future

Prevalence, associated factors and outcomes of pressure injuries in adult intensive care unit patients: the DecubICUs study

Funder: European Society of Intensive Care Medicine; doi: http://dx.doi.org/10.13039/501100013347Funder: Flemish Society for Critical Care NursesAbstract: Purpose: Intensive care unit (ICU) patients are particularly susceptible to developing pressure injuries. Epidemiologic data is however unavailable. We aimed to provide an international picture of the extent of pressure injuries and factors associated with ICU-acquired pressure injuries in adult ICU patients. Methods: International 1-day point-prevalence study; follow-up for outcome assessment until hospital discharge (maximum 12 weeks). Factors associated with ICU-acquired pressure injury and hospital mortality were assessed by generalised linear mixed-effects regression analysis. Results: Data from 13,254 patients in 1117 ICUs (90 countries) revealed 6747 pressure injuries; 3997 (59.2%) were ICU-acquired. Overall prevalence was 26.6% (95% confidence interval [CI] 25.9–27.3). ICU-acquired prevalence was 16.2% (95% CI 15.6–16.8). Sacrum (37%) and heels (19.5%) were most affected. Factors independently associated with ICU-acquired pressure injuries were older age, male sex, being underweight, emergency surgery, higher Simplified Acute Physiology Score II, Braden score 3 days, comorbidities (chronic obstructive pulmonary disease, immunodeficiency), organ support (renal replacement, mechanical ventilation on ICU admission), and being in a low or lower-middle income-economy. Gradually increasing associations with mortality were identified for increasing severity of pressure injury: stage I (odds ratio [OR] 1.5; 95% CI 1.2–1.8), stage II (OR 1.6; 95% CI 1.4–1.9), and stage III or worse (OR 2.8; 95% CI 2.3–3.3). Conclusion: Pressure injuries are common in adult ICU patients. ICU-acquired pressure injuries are associated with mainly intrinsic factors and mortality. Optimal care standards, increased awareness, appropriate resource allocation, and further research into optimal prevention are pivotal to tackle this important patient safety threat

Correction to: Prevalence, associated factors and outcomes of pressure injuries in adult intensive care unit patients: the DecubICUs study

The original version of this article unfortunately contained a mistake

Prevalence, associated factors and outcomes of pressure injuries in adult intensive care unit patients: the DecubICUs study

Funder: European Society of Intensive Care Medicine; doi: http://dx.doi.org/10.13039/501100013347Funder: Flemish Society for Critical Care NursesAbstract: Purpose: Intensive care unit (ICU) patients are particularly susceptible to developing pressure injuries. Epidemiologic data is however unavailable. We aimed to provide an international picture of the extent of pressure injuries and factors associated with ICU-acquired pressure injuries in adult ICU patients. Methods: International 1-day point-prevalence study; follow-up for outcome assessment until hospital discharge (maximum 12 weeks). Factors associated with ICU-acquired pressure injury and hospital mortality were assessed by generalised linear mixed-effects regression analysis. Results: Data from 13,254 patients in 1117 ICUs (90 countries) revealed 6747 pressure injuries; 3997 (59.2%) were ICU-acquired. Overall prevalence was 26.6% (95% confidence interval [CI] 25.9–27.3). ICU-acquired prevalence was 16.2% (95% CI 15.6–16.8). Sacrum (37%) and heels (19.5%) were most affected. Factors independently associated with ICU-acquired pressure injuries were older age, male sex, being underweight, emergency surgery, higher Simplified Acute Physiology Score II, Braden score 3 days, comorbidities (chronic obstructive pulmonary disease, immunodeficiency), organ support (renal replacement, mechanical ventilation on ICU admission), and being in a low or lower-middle income-economy. Gradually increasing associations with mortality were identified for increasing severity of pressure injury: stage I (odds ratio [OR] 1.5; 95% CI 1.2–1.8), stage II (OR 1.6; 95% CI 1.4–1.9), and stage III or worse (OR 2.8; 95% CI 2.3–3.3). Conclusion: Pressure injuries are common in adult ICU patients. ICU-acquired pressure injuries are associated with mainly intrinsic factors and mortality. Optimal care standards, increased awareness, appropriate resource allocation, and further research into optimal prevention are pivotal to tackle this important patient safety threat

Towards Multi-Resolution Imaging of Dynamic Processes in Biological Systems

Dynamic processes in complex systems, such as viral-cell interactions, cargo transport along the cytoskeleton and processive enzyme catalysis, span several orders of magnitude in space and time. To study these events, one must visualize, in real time and three dimensions, both the fast and small target of interest---the virus, the cargo or the enzyme---as well as the larger-scale, nearly stationary counterpart---the cell, the cytoskeleton or the substrate. Designed for this purpose, the 3D multi-resolution microscope (3DMRM) can simultaneously track a nanoscale target and image its surrounding environment. Although this tool provided the possibility to conduct such studies in real biological systems, the actual experiments that start with sample preparation to result interpretation can be complicated. This contribution addresses challenges that arise during the application of 3DMRM on different types of biological systems, in aspects of labeling strategies, trajectory analysis and resolution matching. To probe viral-cell interactions using more biologically-relevant virions instead of abiotic nanoparticles as in the proof-of-concept 3DMRM experiment, a labeling strategy that encapsulates nonblinking giant quantum dots inside pseudotyped HIV-1 virions was designed, which enabled the multi-resolution observation of more realistic viral-cell interactions. When studying a nanoscale object moving next to a curvilinear structure, such as in the cases of cargo transport along microtubules or processive cellulase catalysis on cellulose fibers, challenges remain in the lack of rigorous tools to extract basic physical parameters and detect their changes, as well as in super localization of the curvilinear features in images to bridge up the resolution gap between the tracking and imaging modalities. For trajectory analysis, a two-variable change point method was developed to detect velocity and/or diffusivity changes in single-particle trajectories. For resolution matching, an unsupervised learning framework was established to infer positions of line-shaped features in low signal-to-noise images, using only the descriptive prior information of the feature shape. These efforts help to resolve the uncertainty in detectability when moving from artificial nanomachinery to more biologically-relevant systems and allow for quantitative analysis of multi-scale datasets, thus facilitate the application of 3DMRM to direct observation and understanding of dynamics in complex biological systems

Molecular basis of the general base catalysis of an α/β-hydrolase catalytic triad

Background: The α/β-hydrolase MenH uses its Ser-His-Asp triad as a specific general basis with a poorly understood mechanism. Results: An open-closed conformational change is identified in the enzyme catalysis. Conclusion: The conformational change controls the formation and reactivity of the catalytic triad. Significance: The catalytic versatility of the Ser-His-Asp triad is expanded by the open-closed structural change

Temporal Variability of Source-Specific Solvent-Extractable Organic Compounds in Coastal Aerosols over Xiamen, China

This study describes an analysis of ambient aerosols in a southeastern coastal city of China (Xiamen) in order to assess the temporal variability in the concentrations and sources of organic aerosols (OA). Molecular-level measurements based on a series of solvent extractable lipid compounds reveal inherent heterogeneity in OA, in which the concentration and relative contribution of at least three distinct components (terrestrial plant wax derived, marine/microbial and fossil fuel derived organic matter (OM)) exhibited distinct and systematic temporal variability. Plant wax lipids and associated terrestrial OM are influenced by seasonal variability in plant growth; marine/microbial lipids and associated marine OM are modulated by sea spill and temperature change, whereas fossil fuel derived OM reflects the anthropogenic utilization of fossil fuels originated from petroleum-derived sources and its temporal variation is strongly controlled by meteorological conditions (e.g., the thermal inversion layer), which is analogous to other air organic pollutions. A comparative study among different coastal cities was applied to estimate the supply of different sources of OM to ambient aerosols in different regions, where it was found that biogenic OM in aerosols over Xiamen was much lower than that of other cities; however, petroleum-derived OM exhibited a high level of contribution with a higher concentration of unresolved complex matters (UCM) and higher a ratio between UCM and resolved alkanes (UCM/R)