AKAZEと文字バイグラム確率を用いた分割表記文字の処理について

2022年度卒業論文要旨, 情報科学部情報科学科othe

Genome-wide profiling of promoter methylation in human

DNA methylation in the promoter region of a gene is associated with a loss of that gene's expression and plays an important role in gene silencing. The inactivation of tumor-suppressor genes by aberrant methylation in the promoter region is well recognized in carcinogenesis. However, there has been little study in this area when it comes to genome-wide profiling of the promoter methylation. Here, we developed a genome-wide profiling method called Microarray-based Integrated Analysis of Methylation by Isoschizomers to analyse the DNA methylation of promoter regions of 8091 human genes. With this method, resistance to both the methylation-sensitive restriction enzyme HpaII and the methylation-insensitive isoschizomer MspI was compared between samples by using a microarray with promoter regions of the 8091 genes. The reliability of the difference in HpaII resistance was judged using the difference in MspI resistance. We demonstrated the utility of this method by finding epigenetic mutations in cancer. Aberrant hypermethylation is known to inactivate tumour suppressor genes. Using this method, we found that frequency of the aberrant promoter hypermethylation in cancer is higher than previously hypothesized. Aberrant hypomethylation is known to induce activation of oncogenes in cancer. Genome-wide analysis of hypomethylated promoter sequences in cancer demonstrated low CG/GC ratio of these sequences, suggesting that CpG-poor genes are sensitive to demethylation activity in cancer

Lighty: A Painting Interface for Room Illumination by Robotic Light Array

ABSTRACT We propose an AR-based painting interface that enables users to design an illumination distribution for a real room using an array of computer-controlled lights. Users specify an illumination distribution of the room by painting on the image obtained by a camera mounted in the room. The painting result is overlaid on the camera image as contour lines of the target illumination intensity. The system runs an optimization interactively to calculate light parameters to deliver the requested illumination condition. In this implementation, we used actuated lights that can change the lighting direction to generate the requested illumination condition more accurately and efciently than static lights. We built a miniature-scale experimental environment and ran a user study to compare our method with a standard direct manipulation method using widgets. The results showed that the users preferred our method for informal light control. We propose an augmented reality (AR) user interface called Lighty that enables users to easily design an illumination distribution for a real room using an array of computer-controlled lights. Users specify which area of the room is to be well-lit and which is to be dark by painting an illumination distribution on a tablet device displaying an image obtained by a camera mounted in the room. The system runs an optimization to calculate the light parameters and then illuminates the room. Our method is inspired by the goal-based lighting optimization approach in computer graphics SYSTEM OVERVIEW Our overall system is shown in USER INTERFACE The user interface is shown i

AGE-SPECIFIC TRENDS IN MORTALITY FROM NEPHRITIS AND NEPHROSIS IN JAPAN

Analysis of mortality rates from renal disease (nephritis and nephrosis, acute nephritis, chronic nephritis) in Japan shows : 1) that death rates from chronic nephritis decreased sharply since 1970 in men aged 15-49 years and in women aged 15-39 years ; 2) that in men aged 20-34 years, the mortality rates from chronic nephritis increased from 1955 to 1969 with successive cohorts experiencing higher mortality rates ; 3) that the mortality rates from acute nephritis decreased simultaneously in all age groups and in both sexes during the first ten years from 1955. The influence of the wide application of hemodialysis therapy are discussed

高校トップレベル男子長距離走者のパフォーマンスと大腰筋の筋横断面積および最高酸素摂取量の関係

The purpose of this study was to examine the relationships between running performance and the cross–sectional area of the psoas major, peak oxygen uptake, and running economy in male junior long–distance runners. The subjects were 37 male junior athletes who achieved good records in interscholastic athletic competition during 5 years (2011–2015). Their seasonal best times in a 5,000 m race (5,000m–SB) were 14:04.11 ± 0:07.25 (13:53.64–14:16.15). In a multiple regression analysis, 5,000m–SB was statistical significantly correlated with the cross–sectional area of psoas major (16.0 ± 1.7 cm2) measured on magnetic resonance imaging and peak oxygen uptake (4.25 ± 0.36 l min-1 [76.9 ± 5.8 ml min-1 kg-1]) during a lactate curve test comprising five stages. However, 5,000m–SB was not related to oxygen uptake at the work–load which was less than the load at the lactate threshold estimated by using the lactate curve test results. These results suggest that a high volume of the psoas major, the largest hip–flexor muscle, and peak oxygen uptake are among the important factors for junior long–distance runner performance

Association Between Tooth Loss and Longitudinal Changes in B-Type Natriuretic Peptide Over 5 Years in Postmenopausal Women: The Nagahama Study

BACKGROUND: There is disparity between the sexes in cardiovascular diseases including heart failure (HF). This study aimed to investigate the effect of periodontal disease (PD) on plasma B-type natriuretic peptide (BNP) concentration across sex, age, and menopausal status, as well as the interaction effect of MT and diabetes mellitus (DM) on BNP. METHODS: This large-scale prospective cohort study enrolled 7, 539 individuals with no myocardial infarctions or angina pectoris at baseline from the general Japanese population. The association between baseline number of missing teeth (MT) and the longitudinal changes in BNP over 5 years (ΔBNP) was evaluated according to sex and menopausal status. RESULTS: Among 7, 539 participants, 3, 190 were postmenopausal women with a mean age ± standard deviation of 61.1 ± 7.6 at baseline. Multivariate analysis revealed a positive association between MT and ΔBNP among postmenopausal women even after adjusting for covariates, including traditional HF risk factors (coefficient, 0.210; 95% confidence interval [CI], 0.107 to 0.312; P 50. Including an interaction term (MT × DM) in the multivariate model revealed a positive interaction between MT and DM in ΔBNP among postmenopausal women (coefficient for interaction, 1.365; 95% CI, 0.902 to 1.827; P for interaction <0.001). CONCLUSIONS: Our study showed a positive association between MT and ΔBNP, as well as a positive effect of the interactive association between MT and DM, among postmenopausal women. Our results suggest a sex difference of an adverse effect of PD on initial myocardial wall stress in the ventricles

An epidemiological study on anemia among institutionalized people with intellectual and/or motor disability with special reference to its frequency, severity and predictors

BACKGROUND: To examine the type, frequency, severity, and predictors of anemia and its relationship with co-morbid conditions among institutionalized people with intellectual and/or motor disability. METHODS: We conducted a cross-sectional study at a public facility for people with intellectual and/or motor disability in Ibaraki prefecture, Japan. Health checkup data obtained in 2001 from 477 people with intellectual disability (male: 286, average age 40.6 ± 12.3; female: 191, average age 45.1 ± 11.6) were retrospectively reviewed. RESULTS: The prevalence of anemia among male participants was higher than in female participants for each disability category (intellectual disability, 41.1%, 4.2%; cerebral palsy, 37.5%, 4.8%; Down's syndrome, 15.0%, 0%; severe motor and intellectual disabilities, 61.9%, 16.7%). Most participants with anemia (93.8 – 100%) showed a normocytic normochromic anemia pattern. Multivariate analysis revealed that factors related to an increase in frequency included sex (male), low body mass index (BMI), use of anticonvulsants or major tranquilizers, and a high zinc sulfate turbidity test (ZTT) value. No clinically diagnosed co-morbid condition was found to be related to the presence of anemia. CONCLUSION: A high frequency of mild normocytic normochromic anemia in institutionalized people with intellectual and/or motor disability was observed, particularly among males. Medications and chronic inflammation may increase the risk of anemia

Nebular Phase Observations of the Type Ib Supernova 2008D/X-ray Transient 080109: Side-Viewed Bipolar Explosion

We present optical spectroscopic and photometric observations of supernova (SN) 2008D, associated with the luminous X-ray transient 080109, at >300 days after the explosion (nebular phases). We also give flux measurements of emission lines from the H II region at the site of the SN, and estimates of the local metallicity. The brightness of the SN at nebular phases is consistent with the prediction of the explosion models with an ejected 56Ni mass of 0.07 Msun, which explains the light curve at early phases. The [O I] line in the nebular spectrum shows a double-peaked profile while the [Ca II] line does not. The double-peaked [O I] profile strongly indicates that SN 2008D is an aspherical explosion. The profile can be explained by a torus-like distribution of oxygen viewed from near the plane of the torus. We suggest that SN 2008D is a side-viewed, bipolar explosion with a viewing angle of > 50^{\circ} from the polar direction.Comment: 6 pages, 7 figures, Accepted for publication in Ap

The antiretroviral potency of APOBEC1 deaminase from small animal species

Although the role of the APOBEC3-dependent retroelement restriction system as an intrinsic immune defense against human immunodeficiency virus type1 (HIV-1) infection is becoming clear, only the rat ortholog of mammalian APOBEC1s (A1) thus far has been shown to possess antiviral activity. Here, we cloned A1 cDNAs from small animal species, and showed that similar to rat A1, both wild-type and Δvif HIV-1 infection was inhibited by mouse and hamster A1 (4- to 10-fold), whereas human A1 had negligible effects. Moreover, rabbit A1 significantly reduced the infectivity of both HIV-1 virions (>300-fold), as well as that of SIVmac, SIVagm, FIV and murine leukemia virus. Immunoblot analysis showed that A1s were efficiently incorporated into the HIV-1 virion, and their packaging is mediated through an interaction with the nucleocapsid Gag domain. Interestingly, there was a clear accumulation of particular C-T changes in the genomic RNAs of HIV-1 produced in their presence, with few G-A changes in the proviral DNA. Together, these data reveal that A1 may function as a defense mechanism, regulating retroelements in a wide range of mammalian species

Influence of Skeletal Muscle Mass and Spinal Alignment on Surgical Outcomes for Lumbar Spinal Stenosis

Study Design Retrospective observational study. Purpose We considered the relationship between spinal alignment and skeletal muscle mass on clinical outcomes following a surgery for lumbar spinal stenosis (LSS). Overview of Literature There are no reports of preoperative factors predicting residual low back pain following surgery for LSS. Methods Our target population included 34 women (mean age, 74.4 years) who underwent surgery for LSS. Prior to and 6 months after the surgery, systemic bone mineral density and lean soft tissue mass were measured using dual-energy X-ray absorptiometry. Skeletal muscle mass index (SMI) was calculated as the sum of the arm and leg lean mass in kilograms divided by height in meters squared. The spinal alignment was also measured. Clinical outcomes were evaluated using the Japanese Orthopedic Association scoring system, leg and low back pain Visual Analog Scale, and Roland–Morris Disability Questionnaire (RDQ). Additionally, we examined the bone mineral density, skeletal muscle mass, and spinal alignment before and after the surgery. We used the Spearman correlation coefficient to examine the associations among clinical outcomes, preoperative muscle mass, and spinal alignment. Results Sarcopenia (SMI 6.12), RDQ was significantly higher in subjects with sarcopenia (p =0.04). RDQ was significantly negatively correlated with SMI (r =−0.42, p <0.05). There was a significant positive correlation between postoperative RDQ and pelvic tilt (PT; r =0.41, p <0.05). SMI and PT were significantly negatively correlated (r =−0.39, r <0.05). Conclusions Good postoperative outcomes were negatively correlated with low preoperative appendicular muscle mass, suggesting that postoperative outcomes were inferior in cases of decreased appendicular muscle mass (sarcopenia). Posterior PT due to decreased limb muscle mass may contribute to postoperative back pain, showing that preoperatively reduced limb muscle mass and posterior PT are predictive factors in the persistence of postoperative low back pain