Turbulence Model Implementation and Verification in the SENSEI CFD Code

This paper outlines the implementation and verification of the negative Spalart-Allmaras turbulence model into the SENSEI CFD code. The SA-neg turbulence model is implemented in a flexible, object-oriented framework where additional turbulence models can be easily added. In addition to outlining the new turbulence modeling framework in SENSEI, an overview of the other general improvements to SENSEI is provided. The results for four 2D test cases are compared to results from CFL3D and FUN3D to verify that the turbulence models are implemented properly. Several differences in the results from SENSEI, CFL3D, and FUN3D are identified and are attributed to differences in the implementation and discretization order of the boundary conditions as well as the order of discretization of the turbulence model. When a solid surface is located near or intersects an inflow or outflow boundary, higher order boundary conditions should be used to limit their effect on the forces on the surface. When the turbulence equations are discretized using second order spatial accuracy, the edge of the eddy viscosity profile seems to be sharper than when a first order discretization is used. However, the discretization order of the turbulence equation does not have a significant impact on output quantities of interest, such as pressure and viscous drag, for the cases studied

Comparison of H alpha synoptic charts with the large-scale solar magnetic field as observed at Stanford

Two methods of observing the neutral line of the large-scale photospheric magnetic field are compared: (1) neutral line positions inferred from H alpha photographs and (2) observations of the photospheric magnetic field made with low spatial resolution (3 arc min.) and high sensitivity using the Stanford magnetograph. The comparison is found to be very favorable

Electric Polarizability of Neutral Hadrons from Lattice QCD

By simulating a uniform electric field on a lattice and measuring the change in the rest mass, we calculate the electric polarizability of neutral mesons and baryons using the methods of quenched lattice QCD. Specifically, we measure the electric polarizability coefficient from the quadratic response to the electric field for 10 particles: the vector mesons $\rho^0$ and $K^{*0}$; the octet baryons n, $\Sigma^0$, $\Lambda_{o}^{0}$, $\Lambda_{s}^{0}$, and $\Xi^0$; and the decouplet baryons $\Delta^0$, $\Sigma^{*0}$, and $\Xi^{*0}$. Independent calculations using two fermion actions were done for consistency and comparison purposes. One calculation uses Wilson fermions with a lattice spacing of $a=0.10$fm. The other uses tadpole improved L\"usher-Weiss gauge fields and clover quark action with a lattice spacing $a=0.17$fm. Our results for neutron electric polarizability are compared to experiment.Comment: 25 pages, 20 figure

Criminal self-efficacy and perceptions of risk and reward among women methamphetamine manufacturers

People consider potential risks and rewards while deciding whether to engage in crime. Such perceptions and their impact on behavior can vary according to individual differences like criminal self-efficacy, or one’s perception of criminal competency. We examine perceptions of skill, risk, and reward using semi-structured interviews with 46 women “shake and bake” meth cooks currently residing in a halfway house in Alabama. Those who expressed cooking self-efficacy identified many tangible and intangible rewards in meth cooking, which motivated them to persist. They believed the risks were lower and surmountable, employing various risk management strategies. Those who did not express cooking self-efficacy saw cooking as anxiety-inducing, rather than rewarding. They saw the risks as inevitable and made little effort to prevent them but continued cooking to maintain access to meth. Findings indicate that individual levels of criminal self-efficacy should be considered in studies of decision-making and in intervention and treatment strategies

Development and validation of a chemostat gut model to study both planktonic and biofilm modes of growth of Clostridium difficile and human microbiota

Copyright: 2014 Crowther et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.The human gastrointestinal tract harbours a complex microbial community which exist in planktonic and sessile form. The degree to which composition and function of faecal and mucosal microbiota differ remains unclear. We describe the development and characterisation of an in vitro human gut model, which can be used to facilitate the formation and longitudinal analysis of mature mixed species biofilms. This enables the investigation of the role of biofilms in Clostridium difficile infection (CDI). A well established and validated human gut model of simulated CDI was adapted to incorporate glass rods that create a solid-gaseous-liquid interface for biofilm formation. The continuous chemostat model was inoculated with a pooled human faecal emulsion and controlled to mimic colonic conditions in vivo. Planktonic and sessile bacterial populations were enumerated for up to 46 days. Biofilm consistently formed macroscopic structures on all glass rods over extended periods of time, providing a framework to sample and analyse biofilm structures independently. Whilst variation in biofilm biomass is evident between rods, populations of sessile bacterial groups (log10 cfu/g of biofilm) remain relatively consistent between rods at each sampling point. All bacterial groups enumerated within the planktonic communities were also present within biofilm structures. The planktonic mode of growth of C. difficile and gut microbiota closely reflected observations within the original gut model. However, distinct differences were observed in the behaviour of sessile and planktonic C. difficile populations, with C. difficile spores preferentially persisting within biofilm structures. The redesigned biofilm chemostat model has been validated for reproducible and consistent formation of mixed species intestinal biofilms. This model can be utilised for the analysis of sessile mixed species communities longitudinally, potentially providing information of the role of biofilms in CDI.Peer reviewe

Laser-modified one- and two-photon absorption:Expanding the scope of optical nonlinearity

It is shown that conventional one-photon and two-photon absorption processes can be made subject to nonlinear optical control, in each case significantly modifying the efficiency of absorption, through the effect of a secondary, off-resonant stimulus laser beam. The mechanistic origin of these laser-modified absorption processes, in which the stimulus beam emerges unchanged, is traced to higher-order terms in standard perturbation treatments. These normally insignificant terms become unusually prominent when the secondary optical stimulus is moderately intense. Employing a quantum formulation, the effects of the stimulus beam on one-photon and two-photon absorption are analyzed, and calculations are performed to determine the degree of absorption enhancement, and the form of spectral manifestation, under various laser intensities. The implications of differences in selection rules are also considered and exemplified, leading to the identification of dark states that can be populated as a result of laser-modified absorption. Attention is also drawn to the possibility of quantum nondemolition measurements, based on such a form of optical nonlinearity

Sterilization of lung matrices by supercritical carbon dioxide

Lung engineering is a potential alternative to transplantation for patients with end-stage pulmonary failure. Two challenges critical to the successful development of an engineered lung developed from a decellularized scaffold include (i) the suppression of resident infectious bioburden in the lung matrix, and (ii) the ability to sterilize decellularized tissues while preserving the essential biological and mechanical features intact. To date, the majority of lungs are sterilized using high concentrations of peracetic acid (PAA) resulting in extracellular matrix (ECM) depletion. These mechanically altered tissues have little to no storage potential. In this study, we report a sterilizing technique using supercritical carbon dioxide (ScCO(2)) that can achieve a sterility assurance level 10(−6) in decellularized lung matrix. The effects of ScCO(2) treatment on the histological, mechanical, and biochemical properties of the sterile decellularized lung were evaluated and compared with those of freshly decellularized lung matrix and with PAA-treated acellular lung. Exposure of the decellularized tissue to ScCO(2) did not significantly alter tissue architecture, ECM content or organization (glycosaminoglycans, elastin, collagen, and laminin), observations of cell engraftment, or mechanical integrity of the tissue. Furthermore, these attributes of lung matrix did not change after 6 months in sterile buffer following sterilization with ScCO(2), indicating that ScCO(2) produces a matrix that is stable during storage. The current study's results indicate that ScCO(2) can be used to sterilize acellular lung tissue while simultaneously preserving key biological components required for the function of the scaffold for regenerative medicine purposes

Defect modes in otherwise perfect photonic crystal and photonic crystal fibres

Many of the applications of photonic crystals and photonic crystal fibres require the periodic structure tohave some type of defect. In photonic crystal fibers a point defect defines the fiber core, whereas in photonic crystals a line defect acts as a waveguide, and point defects act as cavities. The modeling of these defects usually either makes use of periodic boundary conditions, by which the defect is replicated periodically, or models a photonic cyrstal of finite extent. HOwever, some applications, for example the cut-off behaviour of a defect mode where the field extends very widely, require methods that can model a defect in an otherwise infinite and perfectly periodic structure. Here we present such a method. It combines the method of fictitious sources with averaging over the Brillouin zone, and we apply it to study the long wavelength behavior of the fundamental mode of photonic crystal fibers

Bures distance between two displaced thermal states

The Bures distance between two displaced thermal states and the corresponding geometric quantities (statistical metric, volume element, scalar curvature) are computed. Under nonunitary (dissipative) dynamics, the statistical distance shows the same general features previously reported in the literature by Braunstein and Milburn for two--state systems. The scalar curvature turns out to have new interesting properties when compared to the curvature associated with squeezed thermal states.Comment: 3 pages, RevTeX, no figure