Carbon fluxes in Karst aquifers: Sources, sinks, and the effect of storm flow

An effective carbon loading can be calculated from measured alkalinity and pH of karst waters. The carbon loading is independent of the degree of saturation of the water and does not depend on the water being in equilibrium with the carbonate wall rock. A substantial data base of spring water analyses accumulated by students over the past 40 years has been used to probe the CO2 generation, transport, and storage in a variety of drainage basins that feed karst springs. Carbon loading in the water exiting karst drainage basins depends on the rate of CO2 generation in the soils of the catchment areas and on the partitioning between CO2 dissolved in infiltration water and CO2 lost by diffusion upward to the atmosphere. For any given drainage basin there are also influences due to vegetative cover, soil type, and the fraction of the water provided by sinking stream recharge. Losses of CO2 back to the atmosphere occur by speleothem deposition in air-filled caves, by degassing of CO2 in spring runs, and by tufa deposition in spring runs. There are seasonal cycles of CO2 generation that relate growing season and contrasts in winter/summer rates of CO2 generation. Overall, it appears that karst aquifers are a net, but leaky, sink for atmospheric CO2.Keywords: CO2, karst aquifers, springs, carbon loading.DOI: 10.3986/ac.v42i2-3.659

Transcriptional repression by ApiAP2 factors is central to chronic toxoplasmosis

Tachyzoite to bradyzoite development in Toxoplasma is marked by major changes in gene expression resulting in a parasite that expresses a new repertoire of surface antigens hidden inside a modified parasitophorous vacuole called the tissue cyst. The factors that control this important life cycle transition are not well understood. Here we describe an important transcriptional repressor mechanism controlling bradyzoite differentiation that operates in the tachyzoite stage. The ApiAP2 factor, AP2IV-4, is a nuclear factor dynamically expressed in late S phase through mitosis/cytokinesis of the tachyzoite cell cycle. Remarkably, deletion of the AP2IV-4 locus resulted in the expression of a subset of bradyzoite-specific proteins in replicating tachyzoites that included tissue cyst wall components BPK1, MCP4, CST1 and the surface antigen SRS9. In the murine animal model, the mis-timing of bradyzoite antigens in tachyzoites lacking AP2IV-4 caused a potent inflammatory monocyte immune response that effectively eliminated this parasite and prevented tissue cyst formation in mouse brain tissue. Altogether, these results indicate that suppression of bradyzoite antigens by AP2IV-4 during acute infection is required for Toxoplasma to successfully establish a chronic infection in the immune-competent host

Integrated safety studies of the urate reabsorption inhibitor lesinurad in treatment of gout.

ObjectiveLesinurad (LESU) is a selective urate reabsorption inhibitor approved at 200 mg daily for use with a xanthine oxidase inhibitor (XOI) to treat hyperuricaemia in gout patients failing to achieve target serum urate on XOI. The aim of the study was to investigate the long-term safety of LESU + XOI therapy.MethodsSafety data were pooled from three 12-month phase III (core) trials evaluating LESU 200 and 400 mg/day combined with an XOI (LESU200+XOI and LESU400+XOI), and two 12-month extension studies using descriptive statistics. To adjust for treatment duration, treatment-emergent adverse events (TEAEs) were expressed as exposure-adjusted incidence rates (patients with events per 100 person-years).ResultsIn the core studies, exposure-adjusted incidence rates for total and total renal-related TEAEs were comparable for XOI alone and LESU200+XOI but higher with LESU400+XOI. Exposure-adjusted incidence rates for serum creatinine (sCr) elevations ⩾1.5×baseline were 2.9, 7.3 and 18.7, respectively. Resolution (sCr ⩽1.2×baseline) occurred in 75-90% of all events, with 66-75% occurring without any study medication interruption. Major adverse cardiovascular events were 3, 4 and 9 with XOI, LESU200+XOI and LESU400+XOI, respectively. Longer exposure in core+extension studies did not increase rates for any safety signals.ConclusionAt the approved dose of 200 mg once-daily combined with an XOI, LESU did not increase renal, cardiovascular or other adverse events compared with XOI alone, except for sCr elevations. With extended exposure in the core+extension studies, the safety profile was consistent with that observed in the core studies, and no new safety concerns were identified

Genetic Improvement of Software: a Comprehensive Survey

Genetic improvement uses automated search to find improved versions of existing software. We present a comprehensive survey of this nascent field of research with a focus on the core papers in the area published between 1995 and 2015. We identified core publications including empirical studies, 96% of which use evolutionary algorithms (genetic programming in particular). Although we can trace the foundations of genetic improvement back to the origins of computer science itself, our analysis reveals a significant upsurge in activity since 2012. Genetic improvement has resulted in dramatic performance improvements for a diverse set of properties such as execution time, energy and memory consumption, as well as results for fixing and extending existing system functionality. Moreover, we present examples of research work that lies on the boundary between genetic improvement and other areas, such as program transformation, approximate computing, and software repair, with the intention of encouraging further exchange of ideas between researchers in these fields

Dark-field transmission electron microscopy and the Debye-Waller factor of graphene

Graphene's structure bears on both the material's electronic properties and fundamental questions about long range order in two-dimensional crystals. We present an analytic calculation of selected area electron diffraction from multi-layer graphene and compare it with data from samples prepared by chemical vapor deposition and mechanical exfoliation. A single layer scatters only 0.5% of the incident electrons, so this kinematical calculation can be considered reliable for five or fewer layers. Dark-field transmission electron micrographs of multi-layer graphene illustrate how knowledge of the diffraction peak intensities can be applied for rapid mapping of thickness, stacking, and grain boundaries. The diffraction peak intensities also depend on the mean-square displacement of atoms from their ideal lattice locations, which is parameterized by a Debye-Waller factor. We measure the Debye-Waller factor of a suspended monolayer of exfoliated graphene and find a result consistent with an estimate based on the Debye model. For laboratory-scale graphene samples, finite size effects are sufficient to stabilize the graphene lattice against melting, indicating that ripples in the third dimension are not necessary.Comment: 10 pages, 4 figure

Clastic Sediments in the Butler Cave – Sinking Creek System, Virginia, USA

The Butler Cave - Sinking Creek System in Bath County, Virginia, consists of a master trunk passage along the axis of a syncline with a trellis arrangement of dip-oriented side caves. The western set of dip passages contain a sequence of massively and chaotically bedded sand and cobble sediments. Massive cobble fills also occur in the strike-oriented trunk passage. Cave passages on the eastern side of the syncline contain mostly sand and silt. The light fraction of the sediments consists predominantly of quartz and rock fragments. The sediments contain several percent heavy minerals composed of iron oxides, zircon, rutile, tourmaline and other minerals. Measurement of the visible and near infrared diffuse reflectance spectra shows at least three populations of sediments to be present: an iron-rich, clay-poor group; a clay-rich group; and a gypsiferous sediment. The iron minerals provided a paleomagnetic signal. Sediments from the trunk passage, deposited by recent underground drainage, contained a normal pole direction. Sediments from the dip passages were paleomagnetically reversed, showing the deposition dates from prior to 780,000 years. In one instance reversed polarity deposits overlie normal polarity, implying a minimum age of 990,000 years for the reversed sediments.   

REACTION MECHANISMS OF MAGNESIUM SILICATES WITH CARBON DIOXIDE IN MICROWAVE FIELDS

The objective of the investigation was to determine whether microwave fields would enhance the reactions of CO{sub 2} with silicates that are relevant to the sequestration of carbon dioxide. Three sets of experiments were conducted. (1) Serpentine and CO{sub 2} were reacted directly at one atmosphere pressure in a microwave furnace. Little reaction was observed. (2) Serpentine was dehydroxylated in a microwave furnace. The reaction was rapid, reaching completion in less than 30 minutes. A detailed investigation of this reaction produced an S-shaped kinetics curve, similar to the kinetics from dehydroxylating serpentine in a resistance furnace, but offset to 100 C lower temperature. This set of experiments clearly demonstrates the effect of microwaves for enhancing reaction kinetics. (3) Reactions of serpentine with alkaline carbonates and in acid solution were carried out in a microwave hydrothermal apparatus. There was a greatly enhanced decomposition of the serpentine in acid solution but, at the temperature and pressure of the reaction chamber (15 bars; 200 C) the carbonates did not react. Overall, microwave fields, as expected, enhance silicate reaction kinetics, but higher CO{sub 2} pressures are needed to accomplish the desired sequestration reactions