65 research outputs found
Gauss sum factorization with cold atoms
We report the first implementation of a Gauss sum factorization algorithm by
an internal state Ramsey interferometer using cold atoms. A sequence of
appropriately designed light pulses interacts with an ensemble of cold rubidium
atoms. The final population in the involved atomic levels determines a Gauss
sum. With this technique we factor the number N=263193.Comment: 4 pages, 5 figure
Validation of skeletal muscle mass assessment at the level of the third cervical vertebra in patients with head and neck cancer
Background: Low skeletal muscle mass (SMM) is associated with adverse outcomes. SMM is often assessed at the third lumbar vertebra (L3) on abdominal imaging. Abdominal imaging is not routinely performed in patients with head and neck cancer (HNC). We aim to validate SMM measurement at the level of the third cervical vertebra (C3) on head and neck imaging. Material and methods: Patients with pre-treatment whole-body computed tomography (CT) between 2010 and 2018 were included. Cross-sectional muscle area (CSMA) was manually delineated at the level of C3 and L3. Correlation coefficients and intraclass correlation coefficients (ICCs) were calculated. Cohen's kappa was used to assess the reliability of identifying a patient with low SMM. Results: Two hundred patients were included. Correlation between CSMA at the level of C3 and L3 was good (r = 0.75, p < 0.01). Using a multivariate formula to estimate CSMA at L3, including gender, age, and weight, correlation improved (r = 0.82, p < 0.01). The agreement between estimated and actual CSMA at L3 was good (ICC 0.78, p < 0.01). There was moderate agreement in the identification of patients with low SMM based on the estimated lumbar skeletal muscle mass index (LSMI) and actual LSMI (Cohen's κ: 0.57, 95%CI 0.45–0.69). Conclusions: CSMA at C3 correlates well with CSMA at L3. There is moderate agreement in the identification of patients with low SMM based on the estimated lumbar SMI (based on measurement at C3) and actual LSMI
Interferometry with Bose-Einstein Condensates in Microgravity
Atom interferometers covering macroscopic domains of space-time are a
spectacular manifestation of the wave nature of matter. Due to their unique
coherence properties, Bose-Einstein condensates are ideal sources for an atom
interferometer in extended free fall. In this paper we report on the
realization of an asymmetric Mach-Zehnder interferometer operated with a
Bose-Einstein condensate in microgravity. The resulting interference pattern is
similar to the one in the far-field of a double-slit and shows a linear scaling
with the time the wave packets expand. We employ delta-kick cooling in order to
enhance the signal and extend our atom interferometer. Our experiments
demonstrate the high potential of interferometers operated with quantum gases
for probing the fundamental concepts of quantum mechanics and general
relativity.Comment: 8 pages, 3 figures; 8 pages of supporting materia
Different expressions of the same mode: a recent dialogue between archaeological and contemporary drawing practices
In this article we explore what we perceive as pertinent features of shared experience at the excavations of an Iron Age Hillfort at Bodfari, North Wales, referencing artist, archaeologist and examples of seminal art works and archaeological records resulting through inter-disciplinary collaboration. We explore ways along which archaeological and artistic practices of improvisation become entangled and productive through their different modes of mark-making. We contend that marks and memories of artist and archaeologist alike emerge interactively, through the mutually constituting effects of the object of study, the tools of exploration, and the practitioners themselves, when they are enmeshed in the cross-modally bound activities. These include, but are not limited to, remote sensing, surveying, mattocking, trowelling, drawing, photographing, videoing and sound recording. These marks represent the co-signatories: the gesture of the often anonymous practitioners, the voice of the deposits, as well as the imprint of the tools, and their interplay creates a multi-threaded narrative documenting their modes of intra-action, in short our practices. They occupy the conceptual space of paradata, and in the process of saturating the interstices of digital cognitive prosthetics they lend probity to their translations in both art form and archive
Stringent response of Escherichia coli: revisiting the bibliome using literature mining
Understanding the mechanisms responsible for cellular responses depends on the systematic collection and analysis of information on the main biological concepts involved. Indeed, the identification of biologically relevant concepts in free text, namely genes, tRNAs, mRNAs, gene products and small molecules, is crucial to capture the structure and functioning of different responses.
Results
In this work, we review literature reports on the study of the stringent response in Escherichia coli. Rather than undertaking the development of a highly specialised literature mining approach, we investigate the suitability of concept recognition and statistical analysis of concept occurrence as means to highlight the concepts that are most likely to be biologically engaged during this response. The co-occurrence analysis of core concepts in this stringent response, i.e. the (p)ppGpp nucleotides with gene products was also inspected and suggest that besides the enzymes RelA and SpoT that control the basal levels of (p)ppGpp nucleotides, many other proteins have a key role in this response. Functional enrichment analysis revealed that basic cellular processes such as metabolism, transcriptional and translational regulation are central, but other stress-associated responses might be elicited during the stringent response. In addition, the identification of less annotated concepts revealed that some (p)ppGpp-induced functional activities are still overlooked in most reviews.
Conclusions
In this paper we applied a literature mining approach that offers a more comprehensive analysis of the stringent response in E. coli. The compilation of relevant biological entities to this stress response and the assessment of their functional roles provided a more systematic understanding of this cellular response. Overlooked regulatory entities, such as transcriptional regulators, were found to play a role in this stress response. Moreover, the involvement of other stress-associated concepts demonstrates the complexity of this cellular response
The ζ Toxin Induces a Set of Protective Responses and Dormancy
The ζε module consists of a labile antitoxin protein, ε, which in dimer form (ε2) interferes with the action of the long-living monomeric ζ phosphotransferase toxin through protein complex formation. Toxin ζ, which inhibits cell wall biosynthesis and may be bactericide in nature, at or near physiological concentrations induces reversible cessation of Bacillus subtilis proliferation (protective dormancy) by targeting essential metabolic functions followed by propidium iodide (PI) staining in a fraction (20–30%) of the population and selects a subpopulation of cells that exhibit non-inheritable tolerance (1–5×10−5). Early after induction ζ toxin alters the expression of ∼78 genes, with the up-regulation of relA among them. RelA contributes to enforce toxin-induced dormancy. At later times, free active ζ decreases synthesis of macromolecules and releases intracellular K+. We propose that ζ toxin induces reversible protective dormancy and permeation to PI, and expression of ε2 antitoxin reverses these effects. At later times, toxin expression is followed by death of a small fraction (∼10%) of PI stained cells that exited earlier or did not enter into the dormant state. Recovery from stress leads to de novo synthesis of ε2 antitoxin, which blocks ATP binding by ζ toxin, thereby inhibiting its phosphotransferase activity
Space-borne Bose-Einstein condensation for precision interferometry
Space offers virtually unlimited free-fall in gravity. Bose-Einstein
condensation (BEC) enables ineffable low kinetic energies corresponding to
pico- or even femtokelvins. The combination of both features makes atom
interferometers with unprecedented sensitivity for inertial forces possible and
opens a new era for quantum gas experiments. On January 23, 2017, we created
Bose-Einstein condensates in space on the sounding rocket mission MAIUS-1 and
conducted 110 experiments central to matter-wave interferometry. In particular,
we have explored laser cooling and trapping in the presence of large
accelerations as experienced during launch, and have studied the evolution,
manipulation and interferometry employing Bragg scattering of BECs during the
six-minute space flight. In this letter, we focus on the phase transition and
the collective dynamics of BECs, whose impact is magnified by the extended
free-fall time. Our experiments demonstrate a high reproducibility of the
manipulation of BECs on the atom chip reflecting the exquisite control features
and the robustness of our experiment. These properties are crucial to novel
protocols for creating quantum matter with designed collective excitations at
the lowest kinetic energy scales close to femtokelvins.Comment: 6 pages, 4 figure
STE-QUEST - Test of the Universality of Free Fall Using Cold Atom Interferometry
In this paper, we report about the results of the phase A mission study of the atom
interferometer instrument covering the description of the main payload elements, the
atomic source concept, and the systematic error sources
Persistent Place-Making in Prehistory: the Creation, Maintenance, and Transformation of an Epipalaeolithic Landscape
Most archaeological projects today integrate, at least to some degree, how past people engaged with their surroundings, including both how they strategized resource use, organized technological production, or scheduled movements within a physical environment, as well as how they constructed cosmologies around or created symbolic connections to places in the landscape. However, there are a multitude of ways in which archaeologists approach the creation, maintenance, and transformation of human-landscape interrelationships. This paper explores some of these approaches for reconstructing the Epipalaeolithic (ca. 23,000–11,500 years BP) landscape of Southwest Asia, using macro- and microscale geoarchaeological approaches to examine how everyday practices leave traces of human-landscape interactions in northern and eastern Jordan. The case studies presented here demonstrate that these Epipalaeolithic groups engaged in complex and far-reaching social landscapes. Examination of the Early and Middle Epipalaeolithic (EP) highlights that the notion of “Neolithization” is somewhat misleading as many of the features we use to define this transition were already well-established patterns of behavior by the Neolithic. Instead, these features and practices were enacted within a hunter-gatherer world and worldview
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