Nonlinear macromodel based on Krylov subspace for micromixer of the microfluidic chip

The simulation of MEMS (Micro-Electro-Mechanical-System) containing fluid field could not be well performed by conventional numerical analysis methods. The micro flow field characteristics can be simulated by using macromodel including a nonlinear analysis. This paper set up the macromodel of the micromixer of the microfluidic chip using Krylov subspace projection method. The system functions were assembled through finite element analysis using COMSOL. We took the flow field-concentration field analysis for micromixer finite element model. The finite element functions order is reduced by second-order Krylov subspace projection method based on Lanczos algorithm. It can be shown that the simulation results obtained by using the macromodel are highly consistent with the results of finite element analysis. The calculation using the macromodel is two orders of magnitude faster than the calculation performed by the finite element analysis method. This macromodel should facilitate the design of microfluidic devices with sophisticated channel networks

A score of bioavailable strontium isotope archaeology in China: Retrospective and prospective

Bioavailable strontium isotope analysis was proposed for prehistoric human ecology almost 40 years ago and rapidly became one of the most important tools to trace past migratory behaviours. Since its first introduction to China in 2003, this method has greatly improved our understanding of migrations on individual- and community-scales over the past 20 years. This paper summarizes the current state of knowledge regarding identifying non-locals, utilizing animal resources, and strontium isoscapes for China based on empirical data. By incorporating additional baseline data, we updated and extended the current bioavailable strontium isoscape for China and Southeast and South Asia. These data will shed new light on intercultural communications and the spread of customs and technologies. In the future, strontium isotope analysis will involve an integrated provenancing system along with multiple approaches such as various isotopes and different modellings. Correspondingly, the existing isoscape needs to improve its spatial resolution and predictive accuracy to source the non-local archaeological biological remains. Furthermore, advances in analytical techniques allow us to reconstruct lifetime mobility of animals and humans at high temporal resolution

FPGA Implementation of a Fixed Latency Scheme in a Signal Packet Router for the Upgrade of ATLAS Forward Muon Trigger Electronics

We propose a new fixed latency scheme for Xilinx gigabit transceivers that will be used in the upgrade of the ATLAS forward muon spectrometer at the Large Hadron Collider. The fixed latency scheme is implemented in a 4.8 Gbps link between a frontend data serializer ASIC and a packet router. To achieve fixed latency, we use IO delay and dedicated carry in resources in a Xilinx FPGA, while minimally relying on the embedded features of the FPGA transceivers. The scheme is protocol independent and can be adapted to FPGA from other vendors with similar resources. This paper presents a detailed implementation of the fixed latency scheme, as well as simulations of the real environment in the ATLAS forward muon region.Comment: 8 pages, 8 figures, accepted by IEEE - Transactions on Nuclear Scienc

Strontium isotopes track female dispersal in Taï chimpanzees

ObjectivesChimpanzees (Pan troglodytes) are patrilocal, with males remaining in their natal community and females dispersing when they reach sexual maturity. However, the details of female chimpanzee dispersal, such as their possible origin, are difficult to assess, even in habituated communities. This study investigates the utility of 87Sr/86Sr analysis for (1) assessing Sr baseline differences between chimpanzee territories and (2) identifying the status (immigrant or natal) of females of unknown origin within the territories of five neighboring communities in Taï National Park (Côte d'Ivoire).Materials and methodsTo create a local Sr isoscape for the Taï Chimpanzee Project (TCP) study area, we sampled environmental samples from TCP-established territories (n = 35). To assess dispersal patterns, 34 tooth enamel samples (one per individual) were selected from the Taï chimpanzee skeletal collection. 87Sr/86Sr analysis was performed on all 69 samples at the W.M. Keck Lab. The theoretical density and overlap of chimpanzee communities as well as generalized linear mixed models (GLMMs) were used to test each question.Results87Sr/86Sr ratios for natal male chimpanzees ranged from 0.71662 to 0.72187, which is well within the corresponding environmental baseline range of 0.70774-0.73460. The local Sr isoscapes fit was estimated with the root-mean-square error value, which was 0.0048 (22% of the whole 87Sr/86Sr data range). GLMMs identified significant differences in 87Sr/86Sr ratios between natal and unknown North community origin groups, suggesting that after 1980, females of unknown origin could be immigrants to North community (n = 7, z-ratio = -4.08, p = 0.0001, power = 0.94).DiscussionThis study indicates that 87Sr/86This study indicates that 87Sr/86Sr analysis can successfully identify immigrant females in skeletal collections obtained from wild chimpanzee communities, enabling the tracking of female dispersal patterns historically. There are, however, significant limitations within the scope of this study, such as (1) the absence of reliable maps for the TCP study area, (2) limited capacity for environmental sampling, (3) small sample sizes, and (4) tooth formation in wild chimpanzees

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature

Motivation: In this work, we aim to develop a computational approach for predicting DNA-binding sites in proteins from amino acid sequences. To avoid overfitting with this method, all available DNA-binding proteins from the Protein Data Bank (PDB) are used to construct the models. The random forest (RF) algorithm is used because it is fast and has robust performance for different parameter values. A novel hybrid feature is presented which incorporates evolutionary information of the amino acid sequence, secondary structure (SS) information and orthogonal binary vector (OBV) information which reflects the characteristics of 20 kinds of amino acids for two physical–chemical properties (dipoles and volumes of the side chains). The numbers of binding and non-binding residues in proteins are highly unbalanced, so a novel scheme is proposed to deal with the problem of imbalanced datasets by downsizing the majority class

Meningitic Escherichia coli K1 Penetration and Neutrophil Transmigration Across the Blood–Brain Barrier are Modulated by Alpha7 Nicotinic Receptor

Alpha7 nicotinic acetylcholine receptor (nAChR), an essential regulator of inflammation, is abundantly expressed in hippocampal neurons, which are vulnerable to bacterial meningitis. However, it is unknown whether α7 nAChR contributes to the regulation of these events. In this report, an aggravating role of α7 nAChR in host defense against meningitic E. coli infection was demonstrated by using α7-deficient (α7-/-) mouse brain microvascular endothelial cells (BMEC) and animal model systems. As shown in our in vitro and in vivo studies, E. coli K1 invasion and polymorphonuclear neutrophil (PMN) transmigration across the blood-brain barrier (BBB) were significantly reduced in α7-/- BMEC and α7-/- mice. Stimulation by nicotine was abolished in the α7-/- cells and animals. The same blocking effect was achieved by methyllycaconitine (α7 antagonist). The tight junction molecules occludin and ZO-1 were significantly reduced in the brain cortex of wildtype mice infected with E. coli and treated with nicotine, compared to α7-/- cells and animals. Decreased neuronal injury in the hippocampal dentate gyrus was observed in α7-/- mice with meningitis. Proinflammatory cytokines (IL-1β, IL-6, TNFα, MCP-1, MIP-1alpha, and RANTES) and adhesion molecules (CD44 and ICAM-1) were significantly reduced in the cerebrospinal fluids of the α7-/- mice with E. coli meningitis. Furthermore, α7 nAChR is the major calcium channel for nicotine- and E. coli K1-increased intracellular calcium concentrations of mouse BMEC. Taken together, our data suggest that α7 nAChR plays a detrimental role in the host defense against meningitic infection by modulation of pathogen invasion, PMN recruitment, calcium signaling and neuronal inflammation