Response of pteropod and related faunas to climate change and ocean acidification

Recent concern over the effects of ocean acidification upon calcifying organisms in the modern ocean has highlighted the aragonitic shelled thecosomatous pteropods as being at a high risk. Laboratory studies have shown that increased pCO2, leading to decreased pH and low carbonate concentrations, has a negative impact on the ability of pteropods to calcify and maintain their shells. This study presents the micropalaeontological analysis of marine cores from the Caribbean Sea, Mediterranean Sea and Indian Ocean. Pteropods, heteropods and planktic foraminifera were picked from samples to provide palaeoenvironmental data for each core. Determination of pteropod calcification was made using the Limacina Dissolution Index (LDX) and the average shell size of Limacina inflata specimens. Pteropod calcification indices were compared to global ice volume and Vostok atmospheric CO2 concentrations to determine any associations between climate and calcification. Results show that changes in surface ocean carbonate concentrations throughout the Late Pleistocene did affect the calcification of thecosomatous pteropods. These effects can be detected in shells from marine sediments that are located well above the aragonite lysocline and have not undergone post-depositional dissolution. The results of this study confirm the findings of laboratory studies, showing a decrease in calcification during interglacial periods, when surface ocean carbonate concentrations were lower. During glacial periods, calcification was enhanced due to the increased availability of carbonate. This trend was found in all sediments studied, indicating that the response of pteropods to past climate change is of global significance. These results demonstrate that pteropods have been negatively affected by oceanic pH levels relatively higher and changing at a lesser rate than those predicted for the 21st Century. Results also establish the use of pteropods and heteropods in reconstructing surface ocean conditions. The LDX is a fast and appropriate way of determining variations in surface water carbonate saturation. Abundances of key species were also found to constrain palaeotemperatures better than planktic foraminifera, a use which could be further developed.This PhD was sponsored by Plymouth University with additional funding from NERC for isotope analysis (IP-1250-0511)

Atlanta ariejansseni, a new species of shelled heteropod from the Southern Subtropical Convergence Zone (Gastropoda, Pterotracheoidea)

The Atlantidae (shelled heteropods) is a family of microscopic aragonite shelled holoplanktonic gastropods with a wide biogeographical distribution in tropical, sub-tropical and temperate waters. The aragonite shell and surface ocean habitat of the atlantids makes them particularly susceptible to ocean acidification and ocean warming, and atlantids are likely to be useful indicators of these changes. However, we still lack fundamental information on their taxonomy and biogeography, which is essential for monitoring the effects of a changing ocean. Integrated morphological and molecular approaches to taxonomy have been employed to improve the assessment of species boundaries, which give a more accurate picture of species distributions. Here a new species of atlantid heteropod is described based on shell morphology, DNA barcoding of the Cytochrome Oxidase I gene, and biogeography. All specimens of Atlanta ariejansseni sp. n. were collected from the Southern Subtropical Convergence Zone of the Atlantic and Indo-Pacific oceans suggesting that this species has a very narrow latitudinal distribution (37–48°S). Atlanta ariejansseni sp. n. was found to be relatively abundant (up to 2.3 specimens per 1000 m3 water) within this narrow latitudinal range, implying that this species has adapted to the specific conditions of the Southern Subtropical Convergence Zone and has a high tolerance to the varying ocean parameters in this region

Exploring ligand stability in protein crystal structures using binding pose metadynamics

Identification of correct protein-ligand binding poses is important in structure-based drug design and crucial for the evaluation of protein-ligand binding affinity. Protein-ligand coordinates are commonly obtained from crystallography experiments that provide a static model of an ensemble of conformations. Binding pose metadynamics (BPMD) is an enhanced sampling method that allows for an efficient assessment of ligand stability in solution. Ligand poses that are unstable under the bias of the metadynamics simulation are expected to be infrequently occupied in the energy landscape, thus making minimal contributions to the binding affinity. Here, the robustness of the method is studied using crystal structures with ligands known to be incorrectly modeled, as well as 63 structurally diverse crystal structures with ligand fit to electron density from the Twilight database. Results show that BPMD can successfully differentiate compounds whose binding pose is not supported by the electron density from those with well-defined electron density

Vertical distribution and diurnal migration of atlantid heteropods

© Inter-Research 201 Understanding the vertical distribution and migratory behaviour of shelled holoplanktonic gastropods is essential in determining the environmental conditions to which they are exposed. This is increasingly important in understanding the effects of ocean acidification and climate change. Here we investigated the vertical distribution of atlantid heteropods by collating data from publications and collections and using the oxygen isotope (? 18 O) composition of single aragonitic shells. Data from publications and collections show 2 patterns of migration behaviour: small species that reside in shallow water at all times, and larger species that make diurnal migrations from the surface at night to deep waters during the daytime. The ? 18 O data show that all species analysed (n = 16) calcify their shells close to the deep chlorophyll maximum. This was within the upper 110 m of the ocean for 15 species, and down to 146 m for a single species. These findings confirm that many atlantid species are exposed to large environmental variations over a diurnal cycle and may already be well adapted to face ocean changes. However, all species analysed rely on aragonite supersaturated waters in the upper < 150 m of the ocean to produce their shells, a region that is projected to undergo the earliest and greatest changes in response to increased anthropogenic CO 2