Root system architecture determines fitness in an Arabidopsis mutant in competition for immobile phosphate ions but not for nitrate ions

Plant root systems often have complex branching patterns. Models indicate that a complex architecture is only required for the acquisition of immobile resources, such as phosphate; mobile ions, notably nitrate, can be effectively taken up by very restricted root systems. We have tested this prediction using the axr4 mutation of Arabidopsis thaliana, the principal phenotypic effect of which is to reduce the number of lateral roots. Arabidopsis thaliana is not a host for mycorrhizal fungi and so acquires all its nutrients through the root system. In both a pot experiment and a field experiment conducted under natural conditions for A. thaliana, we found that only phosphate, and not nitrate, affected the fitness of the mutant relative to the isogenic wild-type line, Columbia. These results confirm model predictions and have implications both for the evolution of complex root systems and for the design of efficient root systems for crops

Consistent truncation of d = 11 supergravity on AdS_4 x S^7

We study the system of equations derived twenty five years ago by B. de Wit and the first author [Nucl. Phys. B281 (1987) 211] as conditions for the consistent truncation of eleven-dimensional supergravity on AdS_4 x S^7 to gauged N = 8 supergravity in four dimensions. By exploiting the E_7(7) symmetry, we determine the most general solution to this system at each point on the coset space E_7(7)/SU(8). We show that invariants of the general solution are given by the fluxes in eleven-dimensional supergravity. This allows us to both clarify the explicit non-linear ansatze for the fluxes given previously and to fill a gap in the original proof of the consistent truncation. These results are illustrated with several examples.Comment: 41 pages, typos corrected, published versio

Joint modeling of ChIP-seq data via a Markov random field model

Chromatin ImmunoPrecipitation-sequencing (ChIP-seq) experiments have now become routine in biology for the detection of protein-binding sites. In this paper, we present a Markov random field model for the joint analysis of multiple ChIP-seq experiments. The proposed model naturally accounts for spatial dependencies in the data, by assuming first-order Markov dependence and, for the large proportion of zero counts, by using zero-inflated mixture distributions. In contrast to all other available implementations, the model allows for the joint modeling of multiple experiments, by incorporating key aspects of the experimental design. In particular, the model uses the information about replicates and about the different antibodies used in the experiments. An extensive simulation study shows a lower false non-discovery rate for the proposed method, compared with existing methods, at the same false discovery rate. Finally, we present an analysis on real data for the detection of histone modifications of two chromatin modifiers from eight ChIP-seq experiments, including technical replicates with different IP efficiencies

N=2 supergravity in five dimensions revisited

We construct matter-coupled N=2 supergravity in five dimensions, using the superconformal approach. For the matter sector we take an arbitrary number of vector-, tensor- and hyper-multiplets. By allowing off-diagonal vector-tensor couplings we find more general results than currently known in the literature. Our results provide the appropriate starting point for a systematic search for BPS solutions, and for applications of M-theory compactifications on Calabi-Yau manifolds with fluxes.Comment: 35 pages; v.2: A sign changed in a bilinear fermion term in (5.7

E7(7) invariant Lagrangian of d=4 N=8 supergravity

We present an E7(7) invariant Lagrangian that leads to the equations of motion of d=4 N=8 supergravity without using Lagrange multipliers. The superinvariance of this new action and the closure of the supersymmetry algebra are proved explicitly for the terms that differ from the Cremmer--Julia formulation. Since the diffeomorphism symmetry is not realized in the standard way on the vector fields, we switch to the Hamiltonian formulation in order to prove the invariance of the E7(7) invariant action under general coordinate transformations. We also construct the conserved E7(7)-Noether current of maximal supergravity and we conclude with comments on the implications of this manifest off-shell E7(7)-symmetry for quantizing d=4 N=8 supergravity, in particular on the E7(7)-action on phase space.Comment: 45 pages, references adde

The Tensor Hierarchies of Pure N=2,d=4,5,6 Supergravities

We study the supersymmetric tensor hierarchy of pure (gauged) N=2,d=4,5,6 supergravity and compare them with those of the pure, ungauged, theories (worked out by Gomis and Roest for d=5) and the predictions of the Kac-Moody approach made by Kleinschmidt and Roest. We find complete agreement in the ungauged case but we also find that, after gauging, new Stueckelberg symmetries reduce the number of independent "physical" top-forms. The analysis has to be performed to all orders in fermion fields. We discuss the construction of the worldvolume effective actions for the p-branes which are charged with respect to the (p+1)-form potentials and the relations between the tensor hierarchies and p-branes upon dimensional reduction.Comment: LaTeX2e file, 20 pages, 1 figure Results refined by extension of the analysis to all orders in fermion

Minimal Stability in Maximal Supergravity

Recently, it has been shown that maximal supergravity allows for non-supersymmetric AdS critical points that are perturbatively stable. We investigate this phenomenon of stability without supersymmetry from the sGoldstino point of view. In particular, we calculate the projection of the mass matrix onto the sGoldstino directions, and derive the necessary conditions for stability. Indeed we find a narrow window allowing for stable SUSY breaking points. As a by-product of our analysis, we find that it seems impossible to perturb supersymmetric critical points into non-supersymmetric ones: there is a minimal amount of SUSY breaking in maximal supergravity.Comment: 27 pages, 1 figure. v2: two typos corrected, published versio

Supersymmetry on AdS3 and AdS4

We consider a supersymmetric extension of the algebra associated with three and four dimensional Anti de Sitter space. A representation of the supersymmetry operators in superspace is given. Supersymmetry invariant models are constructed for the superspace associated with AdS3.Comment: 14 pages, no figures. Final published version. Now includes a discussion of the relation of our approach to previous work on supersymmetry in AdS space

More on Membranes in Matrix Theory

We study noncompact and static membrane solutions in Matrix theory. Demanding axial symmetry on a membrane embedded in three spatial dimensions, we obtain a wormhole solution whose shape is the same with the catenoidal solution of Born-Infeld theory. We also discuss another interesting class of solutions, membranes embedded holomorphically in four spatial dimensions, which are 1/4 BPS.Comment: 7 pages, LaTeX; expanded to treat matrix membrane solutions with electric flux, equivalently fundamental strings; to appear in Phys. Rev.

Completeness in supergravity constructions

We prove that the supergravity r- and c-maps preserve completeness. As a consequence, any component H of a hypersurface {h=1} defined by a homogeneous cubic polynomial such that -d^2 h is a complete Riemannian metric on H defines a complete projective special Kahler manifold and any complete projective special Kahler manifold defines a complete quaternionic Kahler manifold of negative scalar curvature. We classify all complete quaternionic Kahler manifolds of dimension less or equal to 12 which are obtained in this way and describe some complete examples in 16 dimensions.Comment: 29 page