Evolutionary history and identification of conservation units in the giant otter, Pteronura brasiliensis.

The giant otter, Pteronura brasiliensis, occupies a range including the major drainage basins of South America, yet the degree of structure that exists within and among populations inhabiting these drainages is unknown. We sequenced portions of the mitochondrial DNA (mtDNA) cytochrome b (612 bp) and control region (383 bp) genes in order to determine patterns of genetic variation within the species. We found high levels of mtDNA haplotype diversity (h = 0.93 overall) and support for subdivision into four distinct groups of populations, representing important centers of genetic diversity and useful units for prioritizing conservation within the giant otter. We tested these results against the predictions of three hypotheses of Amazonian diversification (Pleistocene Refugia, Paleogeography, and Hydrogeology). While the phylogeographic pattern conformed to the predictions of the Refugia Hypothesis, molecular dating using a relaxed clock revealed the phylogroups diverged from one another between 1.69 and 0.84 Ma, ruling out the influence of Late Pleistocene glacial refugia. However, the role of Plio-Pleistocene climate change could not be rejected. While the molecular dating also makes the influence of geological arches according to the Paleogeography Hypothesis extremely unlikely, the recent Pliocene formation of the Fitzcarrald Arch and its effect of subsequently altering drainage pattern could not be rejected. The data presented here support the interactions of both climatic and hydrological changes resulting from geological activity in the Plio-Pleistocene, in shaping the phylogeographic structure of the giant otter

Transfer of 13C between paired Douglas-fir seedlings reveals plant kinship effects and uptake of exudates by ectomycorrhizas

• Processes governing the fixation, partitioning, and mineralization of carbon in soils are under increasing scrutiny as we develop a more comprehensive understanding of global carbon cycling. Here we examined fixation by Douglas-fir seedlings and transfer to associated ectomycorrhizal fungi, soil microbes, and full-sibling or non-sibling neighbouring seedlings. • Stable isotope probing with 99% 13C-CO2 was applied to trace 13C-labelled photosynthate throughout plants, fungi, and soil microbes in an experiment designed to assess the effect of relatedness on 13C-transfer between plant pairs. The fixation and transfer of 13C-label to plant, fungal, and soil microbial tissue was examined in biomass and PLFAs. • After a 6-day chase period, approximately 26.8% of the 13C remaining in the system was translocated belowground. Enrichment was proportionally greatest in ectomycorrhizal biomass. The presence of mesh barriers (0.5 or 35 µm) between seedlings did not restrict 13C-transfer. • Fungi were the primary recipients of 13C-labelled photosynthate throughout the system, representing 60–70% of total 13C-enriched phospholipids. Full-sibling pairs exhibited significantly greater 13C-transfer to recipient roots in two of four Douglas-fir families, representing 3- and 4-fold increases (+ approx. 4 µg excess 13C) compared to non-sibling pairs. The existence of a root/mycorrhizal exudation – hyphal uptake pathway was supported

All-Sky spectrally matched UBVRI-ZY and u'g'r'i'z' magnitudes for stars in the Tycho2 catalog

We present fitted UBVRI-ZY and u'g'r'i'z' magnitudes, spectral types and distances for 2.4M stars, derived from synthetic photometry of a library spectrum that best matches the Tycho2 BtVt, NOMAD Rn and 2MASS JHK_{2/S} catalog magnitudes. We present similarly synthesized multi-filter magnitudes, types and distances for 4.8M stars with 2MASS and SDSS photometry to g<16 within the Sloan survey region, for Landolt and Sloan primary standards, and for Sloan Northern (PT) and Southern secondary standards. The synthetic magnitude zeropoints for BtVt, UBVRI, ZvYv, JHK_{2/S}, JHK_{MKO}, Stromgren uvby, Sloan u'g'r'i'z' and ugriz are calibrated on 20 calspec spectrophotometric standards. The UBVRI and ugriz zeropoints have dispersions of 1--3%, for standards covering a range of color from -0.3 < V-I < 4.6; those for other filters are in the range 2--5%. The spectrally matched fits to Tycho2 stars provide estimated 1-sigma errors per star of ~0.2, 0.15, 0.12, 0.10 and 0.08 mags respectively in either UBVRI or u'g'r'i'z'; those for at least 70% of the SDSS survey region to g<16 have estimated 1-sigma errors per star of ~0.2, 0.06, 0.04, 0.04, 0.05 in u'g'r'i'z' or UBVRI. The density of Tycho2 stars, averaging about 60 stars per square degree, provides sufficient stars to enable automatic flux calibrations for most digital images with fields of view of 0.5 degree or more. Using several such standards per field, automatic flux calibration can be achieved to a few percent in any filter, at any airmass, in most workable observing conditions, to facilitate inter-comparison of data from different sites, telescopes and instruments.Comment: 36 pages, 30 figures, 3 printed tables, several electronic tables, accepted PASP Dec 201

Steering in computational science: mesoscale modelling and simulation

This paper outlines the benefits of computational steering for high performance computing applications. Lattice-Boltzmann mesoscale fluid simulations of binary and ternary amphiphilic fluids in two and three dimensions are used to illustrate the substantial improvements which computational steering offers in terms of resource efficiency and time to discover new physics. We discuss details of our current steering implementations and describe their future outlook with the advent of computational grids.Comment: 40 pages, 11 figures. Accepted for publication in Contemporary Physic

Binarity of Transit Host Stars - Implications on Planetary Parameters

Straight-forward derivation of planetary parameters can only be achieved in transiting planetary systems. However, planetary attributes such as radius and mass strongly depend on stellar host parameters. Discovering a transit host star to be multiple leads to a necessary revision of the derived stellar and planetary parameters. Based on our observations of 14 transiting exoplanet hosts, we derive parameters of the individual components of three transit host stars (WASP-2, TrES-2, and TrES-4) which we detected to be binaries. Two of these have not been known to be multiple before. Parameters of the corresponding exoplanets are revised. High-resolution "Lucky Imaging" with AstraLux at the 2.2m Calar Alto telescope provided near diffraction limited images in i' and z' passbands. These results have been combined with existing planetary data in order to recalibrate planetary attributes. Despite the faintness (delta mag ~ 4) of the discovered stellar companions to TrES-2, TrES-4, and WASP-2, light-curve deduced parameters change by up to more than 1sigma. We discuss a possible relation between binary separation and planetary properties, which - if confirmed - could hint at the influence of binarity on the planet formation process.Comment: 9 pages, 3 Figures. Accepted by A&

Forces between clustered stereocilia minimize friction in the ear on a subnanometre scale

The detection of sound begins when energy derived from acoustic stimuli deflects the hair bundles atop hair cells. As hair bundles move, the viscous friction between stereocilia and the surrounding liquid poses a fundamental challenge to the ear's high sensitivity and sharp frequency selectivity. Part of the solution to this problem lies in the active process that uses energy for frequency-selective sound amplification. Here we demonstrate that a complementary part involves the fluid-structure interaction between the liquid within the hair bundle and the stereocilia. Using force measurement on a dynamically scaled model, finite-element analysis, analytical estimation of hydrodynamic forces, stochastic simulation and high-resolution interferometric measurement of hair bundles, we characterize the origin and magnitude of the forces between individual stereocilia during small hair-bundle deflections. We find that the close apposition of stereocilia effectively immobilizes the liquid between them, which reduces the drag and suppresses the relative squeezing but not the sliding mode of stereociliary motion. The obliquely oriented tip links couple the mechanotransduction channels to this least dissipative coherent mode, whereas the elastic horizontal top connectors stabilize the structure, further reducing the drag. As measured from the distortion products associated with channel gating at physiological stimulation amplitudes of tens of nanometres, the balance of forces in a hair bundle permits a relative mode of motion between adjacent stereocilia that encompasses only a fraction of a nanometre. A combination of high-resolution experiments and detailed numerical modelling of fluid-structure interactions reveals the physical principles behind the basic structural features of hair bundles and shows quantitatively how these organelles are adapted to the needs of sensitive mechanotransduction.Comment: 21 pages, including 3 figures. For supplementary information, please see the online version of the article at http://www.nature.com/natur

On the Origins of Starburst and Post-Starburst Galaxies in Nearby Clusters

HST WFPC2 images in B (F450W) and I (F814W) have been obtained for three starburst (SB) and two post-starburst (PSB) galaxies in the Coma cluster, and for three such galaxies in the cluster DC2048-52. V (F555W) and I images for an additional PSB galaxy in Coma have been extracted from the archive. Seven of these galaxies were previously classified as E/S0 on the basis of ground-based images, one as Sa, and the other as an irregular. The HST images reveal these SB/PSB galaxies to be heterogeneous in morphology. Nevertheless a common theme is that many of them, especially the SB galaxies, tend to have centralized spiral structure that appears simply as a bright ``bulge''on ground-based images. In addition, while some PSB galaxies exhibit distinct spiral structure, on the whole they have smoother morphologies than the SB galaxies. The morphologies and luminosity profiles are generally consistent with substantial starbursts in the form of centralized spiral structure (the SB galaxies) which fade into smoother morphologies (the PSB galaxies), with lingering spectroscopic evidence for past central starbursts. An important point is that the PSB galaxies retain disks, i.e, they have not evolved into spheroidal systems.Comment: 32 pages, 10 figures including 3 jpg images. To appear in the January 1999 Astronomical Journa

The Luminosity Function Of Field Galaxies And Its Evolution Since z=1

We present the B-band luminosity function and comoving space and luminosity densities for a sample of 2779 I-band selected field galaxies based on multi-color data from the CADIS survey. The sample is complete down to I_815 = 22 without correction and with completeness correction extends to I_815=23.0. By means of a new multi-color analysis the objects are classified according to their spectral energy distributions (SEDs) and their redshifts are determined with typical errors of delta z <= 0.03. We have split our sample into four redshift bins between z=0.1 and z=1.04 and into three SED bins E-Sa,Sa-Sc and starbursting (emission line) galaxies. The evolution of the luminosity function is clearly differential with SED. The normalization phi* of luminosity function for the E-Sa galaxies decreases towards higher redshift, and we find evidence that the comoving galaxy space density decreases with redshift as well. In contrast, we find phi* and the comoving space density increasing with redshift for the Sa-Sc galaxies. For the starburst galaxies we find a steepening of the luminosity function at the faint end and their comoving space density increases with redshift.Comment: 15 pages, 14 figures, accepted by Astronomy&Astrophysic

Deep BVR photometry of the Chandra Deep Field South from the COMBO-17 survey

We report on deep multi-color imaging (R_5-sigma = 26) of the Chandra Deep Field South, obtained with the Wide Field Imager (WFI) at the MPG/ESO 2.2 m telescope on La Silla as part of the COMBO-17 survey. As a result we present a catalog of 63501 objects in a field measuring 31.5' x 30' with astrometry and BVR photometry. A sample of 37 variable objects is selected from two-epoch photometry. We try to give interpretations based on color and variation amplitude.Comment: revised version, major changes(!), reorganized material, submitted to A&A, 7 page

The Palomar Transient Factory: System Overview, Performance and First Results

The Palomar Transient Factory (PTF) is a fully-automated, wide-field survey aimed at a systematic exploration of the optical transient sky. The transient survey is performed using a new 8.1 square degree camera installed on the 48-inch Samuel Oschin telescope at Palomar Observatory; colors and light curves for detected transients are obtained with the automated Palomar 60-inch telescope. PTF uses eighty percent of the 1.2-m and fifty percent of the 1.5-m telescope time. With an exposure of 60-s the survey reaches a depth of approximately 21.3 in g' and 20.6 in R (5 sigma, median seeing). Four major experiments are planned for the five-year project: 1) a 5-day cadence supernova search; 2) a rapid transient search with cadences between 90 seconds and 1 day; 3) a search for eclipsing binaries and transiting planets in Orion; and 4) a 3-pi sr deep H-alpha survey. PTF provides automatic, realtime transient classification and follow up, as well as a database including every source detected in each frame. This paper summarizes the PTF project, including several months of on-sky performance tests of the new survey camera, the observing plans and the data reduction strategy. We conclude by detailing the first 51 PTF optical transient detections, found in commissioning data.Comment: 12 pages, 11 figures, 3 tables, submitted to PAS