25,030 research outputs found

    A (p,q) Deformation of the Universal Enveloping Superalgebra U(osp(2/2))

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    We investigate a two parameter quantum deformation of the universal enveloping orthosymplectic superalgebra U(osp(2/2)) by extending the Faddeev-Reshetikhin-Takhtajan formalism to the supersymetric case. It is shown that Up,q(osp(2/2))U_{p,q}(osp(2/2)) possesses a non-commutative, non-cocommutative Hopf algebra structure. All the results are expressed in the standard form using quantum Chevalley basis.Comment: 8 pages; IC/93/41

    Genome-Wide Localization of Protein-DNA Binding and Histone Modification by a Bayesian Change-Point Method with ChIP-seq Data

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    Next-generation sequencing (NGS) technologies have matured considerably since their introduction and a focus has been placed on developing sophisticated analytical tools to deal with the amassing volumes of data. Chromatin immunoprecipitation sequencing (ChIP-seq), a major application of NGS, is a widely adopted technique for examining protein-DNA interactions and is commonly used to investigate epigenetic signatures of diffuse histone marks. These datasets have notoriously high variance and subtle levels of enrichment across large expanses, making them exceedingly difficult to define. Windows-based, heuristic models and finite-state hidden Markov models (HMMs) have been used with some success in analyzing ChIP-seq data but with lingering limitations. To improve the ability to detect broad regions of enrichment, we developed a stochastic Bayesian Change-Point (BCP) method, which addresses some of these unresolved issues. BCP makes use of recent advances in infinite-state HMMs by obtaining explicit formulas for posterior means of read densities. These posterior means can be used to categorize the genome into enriched and unenriched segments, as is customarily done, or examined for more detailed relationships since the underlying subpeaks are preserved rather than simplified into a binary classification. BCP performs a near exhaustive search of all possible change points between different posterior means at high-resolution to minimize the subjectivity of window sizes and is computationally efficient, due to a speed-up algorithm and the explicit formulas it employs. In the absence of a well-established "gold standard" for diffuse histone mark enrichment, we corroborated BCP's island detection accuracy and reproducibility using various forms of empirical evidence. We show that BCP is especially suited for analysis of diffuse histone ChIP-seq data but also effective in analyzing punctate transcription factor ChIP datasets, making it widely applicable for numerous experiment types

    Quenching and Tomography from RHIC to LHC

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    We compare fully perturbative and fully nonperturbative pictures of high-pT energy loss calculations to the first results from LHC. While over-suppressed compared to published ALICE data, parameter-free pQCD predictions based on the WHDG energy loss model constrained to RHIC data simultaneously describe well the preliminary CMS hadron suppression, ATLAS charged hadron v2, and ALICE D meson suppression; we also provide for future reference WHDG predictions for B meson RAA. However, energy loss calculations based on AdS/CFT also qualitatively describe well the RHIC pion and non-photonic electron suppression and LHC charged hadron suppression. We propose the double ratio of charm to bottom quark RAA will qualitatively distinguish between these two energy loss pictures.Comment: 4 pages, 3 figures. Proceedings for Quark Matter 201

    ASTROD, ASTROD I and their gravitational-wave sensitivities

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    ASTROD (Astrodynamical Space Test of Relativity using Optical Devices) is a mission concept with three spacecraft -- one near L1/L2 point, one with an inner solar orbit and one with an outer solar orbit, ranging coherently with one another using lasers to test relativistic gravity, to measure the solar system and to detect gravitational waves. ASTROD I with one spacecraft ranging optically with ground stations is the first step toward the ASTROD mission. In this paper, we present the ASTROD I payload and accelerometer requirements, discuss the gravitational-wave sensitivities for ASTROD and ASTROD I, and compare them with LISA and radio-wave PDoppler-tracking of spacecraft.Comment: presented to the 5th Edoardo Amaldi Conference (July 6-11, 2003) and submitted to Classical and Quantum Gravit

    Spin relaxation in a GaAs quantum dot embedded inside a suspended phonon cavity

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    The phonon-induced spin relaxation in a two-dimensional quantum dot embedded inside a semiconductor slab is investigated theoretically. An enhanced relaxation rate is found due to the phonon van Hove singularities. Oppositely, a vanishing deformation potential may also result in a suppression of the spin relaxation rate. For larger quantum dots, the interplay between the spin orbit interaction and Zeeman levels causes the suppression of the relaxation at several points. Furthermore, a crossover from confined to bulk-like systems is obtained by varying the width of the slab.Comment: 5 pages, 4 figures, to apper in Phys. Rev. B (2006

    Grouping time series by pairwise measures of redundancy

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    A novel approach is proposed to group redundant time series in the frame of causality. It assumes that (i) the dynamics of the system can be described using just a small number of characteristic modes, and that (ii) a pairwise measure of redundancy is sufficient to elicit the presence of correlated degrees of freedom. We show the application of the proposed approach on fMRI data from a resting human brain and gene expression profiles from HeLa cell culture.Comment: 4 pages, 8 figure

    Sub and Super-Luminal Propagation of Intense Pulses in Media with Saturated and Reverse Absorption

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    We develop models for the propagation of intense pulses in solid state media which can have either saturated absorption or exhibit reverse absorption . We show that the experiments of Bigelow {\it et al.}[Phys. Rev. Lett. {\bf 90}, 113903 (2003); Science {\bf 301}, 200 (2003).] on subluminal propagation in Ruby and superluminal propagation in Alexandrite are well explained by modelling them as three level and four level systems coupled to Maxwell equations. We present results well beyond the traditional pump-probe approach.Comment: 4 pages, 6 figure
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