28 research outputs found

    Signes cliniques, taux d'infestation journaliers, modifications hématologiques et pathomorphologiques sur du bétail infesté artificiellement par <em>Trypanosoma vivax</em>

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    Virtual Mutagenesis of the Yeast Cyclins Genetic Network Reveals Complex Dynamics of Transcriptional Control Networks

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    Study of genetic networks has moved from qualitative description of interactions between regulators and regulated genes to the analysis of the interaction dynamics. This paper focuses on the analysis of dynamics of one particular network – the yeast cyclins network. Using a dedicated mathematical model of gene expression and a procedure for computation of the parameters of the model from experimental data, a complete numerical model of the dynamics of the cyclins genetic network was attained. The model allowed for performing virtual experiments on the network and observing their influence on the expression dynamics of the genes downstream in the regulatory cascade. Results show that when the network structure is more complicated, and the regulatory interactions are indirect, results of gene deletion are highly unpredictable. As a consequence of quantitative behavior of the genes and their connections within the network, causal relationship between a regulator and target gene may not be discovered by gene deletion. Without including the dynamics of the system into the network, its functional properties cannot be studied and interpreted correctly

    The dpsA Gene of Streptomyces coelicolor: Induction of Expression from a Single Promoter in Response to Environmental Stress or during Development

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    The DpsA protein plays a dual role in Streptomyces coelicolor, both as part of the stress response and contributing to nucleoid condensation during sporulation. Promoter mapping experiments indicated that dpsA is transcribed from a single, sigB-like dependent promoter. Expression studies implicate SigH and SigB as the sigma factors responsible for dpsA expression while the contribution of other SigB-like factors is indirect by means of controlling sigH expression. The promoter is massively induced in response to osmotic stress, in part due to its sensitivity to changes in DNA supercoiling. In addition, we determined that WhiB is required for dpsA expression, particularly during development. Gel retardation experiments revealed direct interaction between apoWhiB and the dpsA promoter region, providing the first evidence for a direct WhiB target in S. coelicolor

    Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

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    The relevance of biological materials and processes to computing—aliasbioputing—has been explored for decades. These materials include DNA, RNA and proteins, while the processes include transcription, translation, signal transduction and regulation. Recently, the use of bacteria themselves as living computers has been explored but this use generally falls within the classical paradigm of computing. Computer scientists, however, have a variety of problems to which they seek solutions, while microbiologists are having new insights into the problems bacteria are solving and how they are solving them. Here, we envisage that bacteria might be used for new sorts of computing. These could be based on the capacity of bacteria to grow, move and adapt to a myriad different fickle environments both as individuals and as populations of bacteria plus bacteriophage. New principles might be based on the way that bacteria explore phenotype space via hyperstructure dynamics and the fundamental nature of the cell cycle. This computing might even extend to developing a high level language appropriate to using populations of bacteria and bacteriophage. Here, we offer a speculative tour of what we term bactoputing, namely the use of the natural behaviour of bacteria for calculating

    Tissue equivalence of diamond for heavy charged particles

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    A dedicated Geant4 study was developed to determine a correction factor (C) to convert the energy deposition response in diamond to water for heavy charged ions, with atomic number (Z) greater than 2 with energies typical of Galactic Cosmic Rays. The energy deposition response within an ideal diamond based microdosimeter was modelled and converted into a microdosimetric spectrum. The simulation was then repeated, substituting diamond with water. It was shown that by applying the correction factor, the energy deposition and microdosimetric response in diamond could be matched to that of water. The correction factor was determined to be C = 0.32 to 0.33. This study has shown a weak dependence of the correction factor C with respect to the Z of the projectile. The correction factor remains applicable for converting microdosimetric spectra in diamond to water for Galactic Cosmic Rays. This result is extremely encouraging and indicative of the applicability of diamond for use in radioprotection applications in space environments

    Nonlinear Dynamics, miRNA Circuits

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    SOI Thin Microdosimeter Detectors for Low Energy Ions and Radiation Damage Studies

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    The responses of two silicon on insulator (SOI) 3-D microdosimeters developed by the Centre for Medical Radiation Physics were investigated with a range of different low energy ions, with high linear energy transfer (LET). The two microdosimeters n-SOI and p-SOI were able to measure the LET of different ions including 7 Li, 12 C, 16 O, and 48 Ti with ranges below 350 μm in silicon. No plasma effects were seen in the SOI microdosimeters when irradiated with the high LET ions. A Monte Carlo simulation using Geant4 was compared to the experimental measurements, whereby some discrepancies were observed for heavier ions at lower energies. This discrepancy can be partly attributed to uncertainties in the thickness of the energy degraders and overlayers of the devices. The microdosimetric measurements of low energy 16 O ions were obtained and compared to a therapeutic 16 O ion beam. The radiation hardness of the two devices was studied using the ion beam induced charge collection technique. Both types of the microdosimeters when biased had no essential changes in charge collection efficiency in the sensitive volume after irradiation with low energy ions
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