170 research outputs found
Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax.
BACKGROUND: The Americas were the last continent colonized by humans carrying malaria parasites. Plasmodium falciparum from the New World shows very little genetic diversity and greater linkage disequilibrium, compared with its African counterparts, and is clearly subdivided into local, highly divergent populations. However, limited available data have revealed extensive genetic diversity in American populations of another major human malaria parasite, P. vivax. METHODS: We used an improved sample preparation strategy and next-generation sequencing to characterize 9 high-quality P. vivax genome sequences from northwestern Brazil. These new data were compared with publicly available sequences from recently sampled clinical P. vivax isolates from Brazil (BRA, total n = 11 sequences), Peru (PER, n = 23), Colombia (COL, n = 31), and Mexico (MEX, n = 19). PRINCIPAL FINDINGS/CONCLUSIONS: We found that New World populations of P. vivax are as diverse (nucleotide diversity π between 5.2 × 10-4 and 6.2 × 10-4) as P. vivax populations from Southeast Asia, where malaria transmission is substantially more intense. They display several non-synonymous nucleotide substitutions (some of them previously undescribed) in genes known or suspected to be involved in antimalarial drug resistance, such as dhfr, dhps, mdr1, mrp1, and mrp-2, but not in the chloroquine resistance transporter ortholog (crt-o) gene. Moreover, P. vivax in the Americas is much less geographically substructured than local P. falciparum populations, with relatively little between-population genome-wide differentiation (pairwise FST values ranging between 0.025 and 0.092). Finally, P. vivax populations show a rapid decline in linkage disequilibrium with increasing distance between pairs of polymorphic sites, consistent with very frequent outcrossing. We hypothesize that the high diversity of present-day P. vivax lineages in the Americas originated from successive migratory waves and subsequent admixture between parasite lineages from geographically diverse sites. Further genome-wide analyses are required to test the demographic scenario suggested by our data
Growth of Long Range Forward-Backward Multiplicity Correlations with Centrality in Au+Au Collisions at = 200 GeV
Forward-backward multiplicity correlation strengths have been measured with
the STAR detector for Au+Au and collisions at =
200 GeV. Strong short and long range correlations (LRC) are seen in central
Au+Au collisions. The magnitude of these correlations decrease with decreasing
centrality until only short range correlations are observed in peripheral Au+Au
collisions. Both the Dual Parton Model (DPM) and the Color Glass Condensate
(CGC) predict the existence of the long range correlations. In the DPM the
fluctuation in the number of elementary (parton) inelastic collisions produces
the LRC. In the CGC longitudinal color flux tubes generate the LRC. The data is
in qualitative agreement with the predictions from the DPM and indicates the
presence of multiple parton interactions.Comment: 6 pages, 3 figures The abstract has been slightly modifie
Inclusive charged hadron elliptic flow in Au + Au collisions at = 7.7 - 39 GeV
A systematic study is presented for centrality, transverse momentum ()
and pseudorapidity () dependence of the inclusive charged hadron elliptic
flow () at midrapidity() in Au+Au collisions at
= 7.7, 11.5, 19.6, 27 and 39 GeV. The results obtained with
different methods, including correlations with the event plane reconstructed in
a region separated by a large pseudorapidity gap and 4-particle cumulants
(), are presented in order to investigate non-flow correlations and
fluctuations. We observe that the difference between and
is smaller at the lower collision energies. Values of , scaled by
the initial coordinate space eccentricity, , as a function
of are larger in more central collisions, suggesting stronger collective
flow develops in more central collisions, similar to the results at higher
collision energies. These results are compared to measurements at higher
energies at the Relativistic Heavy Ion Collider ( = 62.4 and 200
GeV) and at the Large Hadron Collider (Pb + Pb collisions at =
2.76 TeV). The values for fixed rise with increasing collision
energy within the range studied (). A comparison to
viscous hydrodynamic simulations is made to potentially help understand the
energy dependence of . We also compare the results to UrQMD
and AMPT transport model calculations, and physics implications on the
dominance of partonic versus hadronic phases in the system created at Beam
Energy Scan (BES) energies are discussed.Comment: 20 pages, 12 figures. Version accepted by PR
Forward Neutral Pion Transverse Single Spin Asymmetries in p+p Collisions at \sqrt{s}=200 GeV
We report precision measurements of the Feynman-x dependence, and first
measurements of the transverse momentum dependence, of transverse single spin
asymmetries for the production of \pi^0 mesons from polarized proton collisions
at \sqrt{s}=200 GeV. The x_F dependence of the results is in fair agreement
with perturbative QCD model calculations that identify orbital motion of quarks
and gluons within the proton as the origin of the spin effects. Results for the
p_T dependence at fixed x_F are not consistent with pQCD-based calculations.Comment: 6 pages, 4 figure
Longitudinal Spin Transfer to and Hyperons in Polarized Proton-Proton Collisions at = 200 GeV
The longitudinal spin transfer, , from high energy polarized protons
to and hyperons has been measured for the first time
in proton-proton collisions at with the STAR
detector at RHIC. The measurements cover pseudorapidity, , in the range
and transverse momenta, , up to . The longitudinal spin transfer is found to be for inclusive
and for
inclusive hyperons with and . The dependence on and is presented.Comment: 5 pages, 4 figure
Observation of the antimatter helium-4 nucleus
High-energy nuclear collisions create an energy density similar to that of
the universe microseconds after the Big Bang, and in both cases, matter and
antimatter are formed with comparable abundance. However, the relatively
short-lived expansion in nuclear collisions allows antimatter to decouple
quickly from matter, and avoid annihilation. Thus, a high energy accelerator of
heavy nuclei is an efficient means of producing and studying antimatter. The
antimatter helium-4 nucleus (), also known as the anti-{\alpha}
(), consists of two antiprotons and two antineutrons (baryon
number B=-4). It has not been observed previously, although the {\alpha}
particle was identified a century ago by Rutherford and is present in cosmic
radiation at the 10% level. Antimatter nuclei with B < -1 have been observed
only as rare products of interactions at particle accelerators, where the rate
of antinucleus production in high-energy collisions decreases by about 1000
with each additional antinucleon. We present the observation of the antimatter
helium-4 nucleus, the heaviest observed antinucleus. In total 18
counts were detected at the STAR experiment at RHIC in 10 recorded Au+Au
collisions at center-of-mass energies of 200 GeV and 62 GeV per nucleon-nucleon
pair. The yield is consistent with expectations from thermodynamic and
coalescent nucleosynthesis models, which has implications beyond nuclear
physics.Comment: 19 pages, 4 figures. Submitted to Nature. Under media embarg
Strangeness Enhancement in Cu+Cu and Au+Au Collisions at \sqrt{s_{NN}} = 200 GeV
We report new STAR measurements of mid-rapidity yields for the ,
, , , , ,
particles in Cu+Cu collisions at \sNN{200}, and mid-rapidity
yields for the , , particles in Au+Au at
\sNN{200}. We show that at a given number of participating nucleons, the
production of strange hadrons is higher in Cu+Cu collisions than in Au+Au
collisions at the same center-of-mass energy. We find that aspects of the
enhancement factors for all particles can be described by a parameterization
based on the fraction of participants that undergo multiple collisions
K/pi Fluctuations at Relativistic Energies
We report results for fluctuations from Au+Au collisions at
= 19.6, 62.4, 130, and 200 GeV using the STAR detector at the
Relativistic Heavy Ion Collider. Our results for fluctuations in
central collisions show little dependence on the incident energies studied and
are on the same order as results observed by NA49 at the Super Proton
Synchrotron in central Pb+Pb collisions at = 12.3 and 17.3 GeV.
We also report results for the collision centrality dependence of
fluctuations as well as results for , ,
, and fluctuations. We observe that the
fluctuations scale with the multiplicity density, , rather than the
number of participating nucleons.Comment: 6 pages, 4 figure
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