Study of the combined effects of data assimilation and grid nesting in ocean models - application to the Gulf of Lions

Modern operational ocean forecasting systems routinely use data assimilation techniques in order to takeobservations into account in the hydrodynamic model. Moreover, as end users require higher and higher resolution predictions, especially in coastal zones, it is now common to run nested models, where the coastal model gets its opensea boundary conditions from a low-resolution global model. This configuration is used in the “Mediterranean Forecasting System: Towards environmental predictions” (MFSTEP) project. A global model covering the whole Mediterranean Sea is run weekly, performing 1 week of hindcast and a 10-day forecast. Regional models, using different codes and covering different areas, then use this forecast to implement boundary conditions. Local models in turn use the regional model forecasts for their own boundary conditions. This nested system has proven to be a viable and efficient system to achieve high-resolution weekly forecasts. However, when observations are available in some coastal zone, it remains unclear whether it is better to assimilate them in the global or local model. We perform twin experiments and assimilate observations in the global or in the local model, or in both of them together. We show that, when interested in the local models forecast and provided the global model fields are approximately correct, the best results are obtained when assimilating observations in the local model

Relationship between spatial proximity and travel-to-work distance : the effect of the compact city

In this paper, an assessment is made of the relationship between selected aspects of spatial proximity (density, diversity, minimum commuting distance, jobs-housing balance and job accessibility) and reported commuting distances in Flanders (Belgium). Results show that correlations may depend on the considered trip end. For example, a high residential density, a high degree of spatial diversity and a high level of job accessibility are all associated with a short commute by residents, while a high job density is associated with a long commute by employees. A jobs-housing balance close to one is associated with a short commute, both by residents and by employees. In general, it appears that the alleged sustainability benefits of the compact city model are still valid in a context of continuously expanding commuting trip lengths

Upscaling of a local model into a larger-scale model

Traditionally, in order for lower-resolution, global- or basin-scale (regional) models to benefit from some of the improvements available in higher-resolution subregional or coastal models, two-way nesting has to be used. This implies that the parent and child models have to be run together and there is an online exchange of information between both models. This approach is often impossible in operational systems where different model codes are run by different institutions, often in different countries. Therefore, in practice, these systems use one-way nesting with data transfer only from the parent model to the child models. In this article, it is examined whether it is possible to replace the missing feedback (coming from the child model) by data assimilation, avoiding the need to run the models simultaneously. Selected variables from the high-resolution simulation will be used as pseudo-observations and assimilated into the low-resolution models. This method will be called “upscaling”. A realistic test case is set up with a model covering the Mediterranean Sea, and a nested model covering its north-western basin. Under the hypothesis that the nested model has better prediction skills than the parent model, the upscaling method is implemented. Two simulations of the parent model are then compared: the case of one-way nesting (or a stand-alone model) and a simulation using the upscaling technique on the temperature and salinity variables. It is shown that the representation of some processes, such as the Rhône River plume, is strongly improved in the upscaled model compared to the stand-alone model.</p

A relocatable ocean model in support of environmental emergencies

During the Costa Concordia emergency case, regional, subregional, and relocatable ocean models have been used together with the oil spill model, MEDSLIK-II, to provide ocean currents forecasts, possible oil spill scenarios, and drifters trajectories simulations. The models results together with the evaluation of their performances are presented in this paper. In particular, we focused this work on the implementation of the Interactive Relocatable Nested Ocean Model (IRENOM), based on the Harvard Ocean Prediction System (HOPS), for the Costa Concordia emergency and on its validation using drifters released in the area of the accident. It is shown that thanks to the capability of improving easily and quickly its configuration, the IRENOM results are of greater accuracy than the results achieved using regional or subregional model products. The model topography, and to the initialization procedures, and the horizontal resolution are the key model settings to be configured. Furthermore, the IRENOM currents and the MEDSLIK-II simulated trajectories showed to be sensitive to the spatial resolution of the meteorological fields used, providing higher prediction skills with higher resolution wind forcing.MEDESS4MS Project; TESSA Project; MyOcean2 Projectinfo:eu-repo/semantics/publishedVersio

The positive impact of cisternostomy with cisternal drainage on delayed hydrocephalus after aneurysmal subarachnoid hemorrhage.

Hydrocephalus is one of the major complications of aneurysmal subarachnoid haemorrhage (aSAH). In the acute setting, an external ventricular drain (EVD) is used for early management. A cisternal drain (CD) coupled with the micro-surgical opening of basal cisterns can be an alternative when the aneurysm is clipped. Chronic hydrocephalus after aSAH is managed with ventriculo-peritoneal (VP) shunt, a procedure associated with a wide range of complications. The aim of this study is to analyse the impact of micro-surgical opening of basal cisterns coupled with CD on the incidence of VP shunt, compared to patients treated with EVD. The authors conducted a retrospective review of 89 consecutive cases of patients with aSAH treated surgically and endovascularly with either EVD or CD between January 2009 and September 2021. Patients were stratified into two groups: Group 1 included patients with EVD, Group 2 included patients with CD. Subgroup analysis with only patients treated surgically was also performed. We compared their baseline characteristics, clinical outcomes and shunting rates. There were no statistically significant differences between the two groups in terms of epidemiological characteristics, WFNS score, Fisher scale, presence of intraventricular hemorrhage (IVH), acute hydrocephalus, postoperative meningitis or of clinical outcomes at last follow-up. Cisternostomy with CD (Group 2) was associated with a statistically significant reduction in VP-shunt compared with the use of an EVD (Group 1) (9.09% vs 53.78%; p &lt; 0.001). This finding was confirmed in our subgroup analysis, as among patients with a surgical clipping, the rate of VP shunt was 43.7% for the EVD group and 9.5% for the CD group (p = 0.02). Cisternostomy with CD may reduce the rate of shunt-dependent hydrocephalus. Cisternostomy allows the removal of subarachnoid blood, thereby reducing arachnoid inflammation and fibrosis. CD may enhance this effect, thus resulting in lower rates of chronic hydrocephalus

Crystal structure and substrate-induced activation of ADAMTS13

Platelet recruitment to sites of blood vessel damage is highly dependent upon von Willebrand factor (VWF). VWF platelet-tethering function is proteolytically regulated by the metalloprotease ADAMTS13. Proteolysis depends upon shear-induced conformational changes in VWF that reveal the A2 domain cleavage site. Multiple ADAMTS13 exosite interactions are involved in recognition of the unfolded A2 domain. Here we report through kinetic analyses that, in binding VWF, the ADAMTS13 cysteine-rich and spacer domain exosites bring enzyme and substrate into proximity. Thereafter, binding of the ADAMTS13 disintegrin-like domain exosite to VWF allosterically activates the adjacent metalloprotease domain to facilitate proteolysis. The crystal structure of the ADAMTS13 metalloprotease to spacer domains reveals that the metalloprotease domain exhibits a latent conformation in which the active-site cleft is occluded supporting the requirement for an allosteric change to enable accommodation of the substrate. Our data demonstrate that VWF functions as both the activating cofactor and substrate for ADAMTS13

Procedimientos Inmunocitoquímicos para Estudiar la Distribución y la Participación en la Defensa de Péptidos Antimicrobianos

El presente artículo describe adaptaciones y principios básicos para la realización de análisis inmunocitoquímicospara la detección de péptidos antimicrobianos tanto de camarones como de mejillones. Estos análisisinmunocitoquímicos, no solamente describen en forma estática la ubicación de estos péptidos, si no que permitirtener una comprensión funcional de los fenómenos ligados a localización y distribución de estos efectores. Losanálisis aquí descritos son variados y comienzan con la descripción de la detección los efectores en corteshistológicos provenientes de bloques de parafina y el uso de la microscopía confocal. Además, este artículodescribe también protocolos y pone de manifiesto ciertos detalles técnicos de la detección inmune de los efectoresantes o después de la inclusión en la resina asociados a la microscopía electrónica tanto de células como depequeños piezas de tejidos disectados

Procedimientos Inmunocitoquímicos para Estudiar la Distribución y la Participación en la Defensa de Péptidos Antimicrobianos

El presente artículo describe adaptaciones y principios básicos para la realización de análisis inmunocitoquímicospara la detección de péptidos antimicrobianos tanto de camarones como de mejillones. Estos análisisinmunocitoquímicos, no solamente describen en forma estática la ubicación de estos péptidos, si no que permitirtener una comprensión funcional de los fenómenos ligados a localización y distribución de estos efectores. Losanálisis aquí descritos son variados y comienzan con la descripción de la detección los efectores en corteshistológicos provenientes de bloques de parafina y el uso de la microscopía confocal. Además, este artículodescribe también protocolos y pone de manifiesto ciertos detalles técnicos de la detección inmune de los efectoresantes o después de la inclusión en la resina asociados a la microscopía electrónica tanto de células como depequeños piezas de tejidos disectados

Cisternal nicardipine for prevention of delayed cerebral ischemia in aneurysmal subarachnoid hemorrhage: a comparative retrospective cohort study.

Intrathecal vasoactive drugs have been proposed in patients with aneurysmal subarachnoid hemorrhage (aSAH) to manage cerebral vasospasm (CV). We analyzed the efficacy of intracisternal nicardipine compared to intraventricular administration to a control group (CG) to determine its impact on delayed cerebral ischemia (DCI) and functional outcomes. Secondary outcomes included the need for intra-arterial angioplasties and the safety profile. We performed a retrospective analysis of prospectively collected data of all adult patients admitted for a high modified Fisher grade aSAH between January 2015 and April 2022. All patients with significant radiological CV were included. Three groups of patients were defined based on the CV management: cisternal nicardipine (CN), ventricular nicardipine (VN), and no intrathecal nicardipine (control group). Seventy patients met the inclusion criteria. Eleven patients received intracisternal nicardipine, 18 intraventricular nicardipine, and 41 belonged to the control group. No cases of DCI were observed in the CN group (p = 0.02). Patients with intracisternal nicardipine had a reduced number of intra-arterial angioplasties when compared to the control group (p = 0.03). The safety profile analysis showed no difference in complications across the three groups. Intrathecal (ventricular or cisternal) nicardipine therapy improved functional outcomes at 6 months (p = 0.04) when compared to the control group. Administration of intrathecal nicardipine for moderate to severe CV reduces the rate of DCI and improved long-term functional outcomes in patients with high modified Fisher grade aSAH. This study also showed a relative benefit of cisternal over intraventricular nicardipine, thereby reducing the number of angioplasties performed in the post-treatment phase. However, these preliminary results should be confirmed with future prospective studies