538 research outputs found
Modeling the quantum evolution of the universe through classical matter
It is well known that the canonical quantization of the
Friedmann-Lema\^itre-Robertson-Walker (FLRW) filled with a perfect fluid leads
to nonsingular universes which, for later times, behave as their classical
counterpart. This means that the expectation value of the scale factor
never vanishes and, as , we recover the classical expression for
the scale factor. In this paper, we show that such universes can be reproduced
by classical cosmology given that the universe is filled with an exotic matter.
In the case of a perfect fluid, we find an implicit equation of state (EoS). We
then show that this single fluid with an implict EoS is equivalent to two
non-interacting fluids, one of them representing stiff matter with negative
energy density. In the case of two non-interacting scalar fields, one of them
of the phantom type, we find their potential energy. In both cases we find that
quantum mechanics changes completely the configuration of matter for small
values of time, by adding a fluid or a scalar field with negative energy
density. As time passes, the density of negative energy decreases and we
recover the ordinary content of the classical universe. The more the initial
wave function of the universe is concentrated around the classical big bang
singularity, the more it is necessary to add negative energy, since this type
of energy will be responsible for the removal of the classical singularity.Comment: updated version as accepted by Gen. Relativ. Gravi
Phylogenetic and functional diversity of metagenomic libraries of phenol degrading sludge from petroleum refinery wastewater treatment system
In petrochemical refinery wastewater treatment plants (WWTP), different concentrations of pollutant compounds are received daily in the influent stream, including significant amounts of phenolic compounds, creating propitious conditions for the development of particular microorganisms that can rapidly adapt to such environment. In the present work, the microbial sludge from a refinery WWTP was enriched for phenol, cloned into fosmid vectors and pyrosequenced. The fosmid libraries yielded 13,200 clones and a comprehensive bioinformatic analysis of the sequence data set revealed a complex and diverse bacterial community in the phenol degrading sludge. The phylogenetic analyses using MEGAN in combination with RDP classifier showed a massive predominance of Proteobacteria, represented mostly by the genera Diaphorobacter, Pseudomonas, Thauera and Comamonas. The functional classification of phenol degrading sludge sequence data set generated by MG-RAST showed the wide metabolic diversity of the microbial sludge, with a high percentage of genes involved in the aerobic and anaerobic degradation of phenol and derivatives. In addition, genes related to the metabolism of many other organic and xenobiotic compounds, such as toluene, biphenyl, naphthalene and benzoate, were found. Results gathered herein demonstrated that the phenol degrading sludge has complex phylogenetic and functional diversities, showing the potential of such community to degrade several pollutant compounds. This microbiota is likely to represent a rich resource of versatile and unknown enzymes which may be exploited for biotechnological processes such as bioremediation
Universal features of correlated bursty behaviour
Inhomogeneous temporal processes, like those appearing in human
communications, neuron spike trains, and seismic signals, consist of
high-activity bursty intervals alternating with long low-activity periods. In
recent studies such bursty behavior has been characterized by a fat-tailed
inter-event time distribution, while temporal correlations were measured by the
autocorrelation function. However, these characteristic functions are not
capable to fully characterize temporally correlated heterogenous behavior. Here
we show that the distribution of the number of events in a bursty period serves
as a good indicator of the dependencies, leading to the universal observation
of power-law distribution in a broad class of phenomena. We find that the
correlations in these quite different systems can be commonly interpreted by
memory effects and described by a simple phenomenological model, which displays
temporal behavior qualitatively similar to that in real systems
Lessons to be learnt from Leishmania studies
Leishmaniasis is a disease caused by infection with the protozoan parasite Leishmania, which is responsible for three main types of disease: cutaneous leishmaniasis, visceral leishmaniasis and mucocutaneous leishmaniasis based to the site of infection for the particular species. This presents a major challenge to successful drug treatment, as a drug must not only reach antileishmanial concentrations in infected macrophages, the parasites' host cell, but also reach infected cells in locations specific to the type of disease. In this paper we discuss how studies using Leishmania have contributed to our knowledge on how drug delivery systems can be used to improve drug efficacy and delivery
Efficacy of a broad host range lytic bacteriophage against E. coli adhered to urothelium
Persistent urinary tract infections (UTI) are often caused by E. coli adhered to urothelium. This type of cells is generally recognized as very tolerant to antibiotics which renders difficult the treatment of chronic UTI. This work investigates the use of lytic bacteriophages as alternative antimicrobial agents, particularly the interaction of phages with E. coli adhered to urothelium and specifically determines their efficiency against this type of cells. The bacterial adhesion to urothelium was performed varying the bacterial cell concentrations and the period and conditions (static, shaken) of adhesion. Three collection bacteriophages (T1, T4 and phiX174 like phages) were tested against clinical E. coli isolates and only one was selected for further infection experiments. Based on the lytic spectrum against clinical isolates and its ability to infect the highest number of antibiotic resistant strains, the T1-like bacteriophage was selected. This bacteriophage caused nearly a 45 % reduction of the bacterial population after 2 h of treatment. This study provides evidence that bacteriophages are effective in controlling suspended and adhered cells and therefore can be a viable alternative to antibiotics to control urothelium adhered bacteria
Dopamine-Induced Conformational Changes in Alpha-Synuclein
Background: Oligomerization and aggregation of α-synuclein molecules play a major role in neuronal dysfunction and loss in Parkinson's disease [1]. However, α-synuclein oligomerization and aggregation have mostly been detected indirectly in cells using detergent extraction methods [2], [3], [4]. A number of in vitro studies showed that dopamine can modulate the aggregation of α-synuclein by inhibiting the formation of or by disaggregating amyloid fibrils [5], [6], [7]. Methodology/Principal Findings: Here, we show that α-synuclein adopts a variety of conformations in primary neuronal cultures using fluorescence lifetime imaging microscopy (FLIM). Importantly, we found that dopamine, but not dopamine agonists, induced conformational changes in α-synuclein which could be prevented by blocking dopamine transport into the cell. Dopamine also induced conformational changes in α-synuclein expressed in neuronal cell lines, and these changes were also associated with alterations in oligomeric/aggregated species. Conclusion/Significance: Our results show, for the first time, a direct effect of dopamine on the conformation of α-synuclein in neurons, which may help explain the increased vulnerability of dopaminergic neurons in Parkinson's disease
Visual Information Alone Changes Behavior and Physiology during Social Interactions in a Cichlid Fish (Astatotilapia burtoni)
Social behavior can influence physiological systems dramatically yet the sensory
cues responsible are not well understood. Behavior of male African cichlid fish,
Astatotilapia burtoni, in their natural habitat suggests
that visual cues from conspecifics contribute significantly to regulation of
social behavior. Using a novel paradigm, we asked whether visual cues alone from
a larger conspecific male could influence behavior, reproductive physiology and
the physiological stress response of a smaller male. Here we show that just
seeing a larger, threatening male through a clear barrier can suppress dominant
behavior of a smaller male for up to 7 days. Smaller dominant males being
“attacked” visually by larger dominant males through a clear barrier
also showed physiological changes for up to 3 days, including up-regulation of
reproductive- and stress-related gene expression levels and lowered plasma
11-ketotestesterone concentrations as compared to control animals. The smaller
males modified their appearance to match that of non-dominant males when exposed
to a larger male but they maintained a physiological phenotype similar to that
of a dominant male. After 7 days, reproductive- and stress- related gene
expression, circulating hormone levels, and gonad size in the smaller males
showed no difference from the control group suggesting that the smaller male
habituated to the visual intruder. However, the smaller male continued to
display subordinate behaviors and assumed the appearance of a subordinate male
for a full week despite his dominant male physiology. These data suggest that
seeing a larger male alone can regulate the behavior of a smaller male but that
ongoing reproductive inhibition depends on additional sensory cues. Perhaps,
while experiencing visual social stressors, the smaller male uses an
opportunistic strategy, acting like a subordinate male while maintaining the
physiology of a dominant male
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