Genetic relationship of the Chiapas sheep breed with some spanish breeds

In the Southeastern part of Mexico, there are ovines descendent from Spanish ovines that were introduced in XVI century. The objective was to characterize ovine populations from Chiapas and the genetic distances with some Spanish breeds. 27 widely used microsatellites in biodiversity studies were employed in this research work. Ovines from Canary Islands were the more genetically distant from Mexicans. An algorithm inferring such admixture of genotypes of the population was used (one of de ancestors belongs to a different population). The number of inferred populations (K) was from 2 to 7 and the total number of iterations was 800000. When K=3, breeds from Chiapas were grouped, Palmera in another group and Merino, Sopravissana and Canaria in the third group. With K= 4. The breeds from Chiapas were once more grouped in a cluster, Merino and Sopravissana in a second group, Palmera and Canaria, were two independent clusters. For K=5. The breeds from Chiapas were grouped, and independent groups for the rest of breeds. With K=6 Chamula and Café remained together and with K=7 the program assigned to the breeds Chiapas, Chamula and Café in different clusters, but a remarkable influence from Chamula into Café is appreciated. The Palmera was partially divided in two clusters, showing that could exist individuals genetically different inside this population. The Borrego Chiapas has a vast individuality and genetic diversity.En el sureste de México existen ovinos que descienden de los ovinos españoles introducidos en el siglo XVI. El objetivo fue caracterizar las poblaciones ovinas de Chiapas y analizar las distancias genéticas con algunas poblaciones ovinas españolas. Se emplearon 27 microsatélites ampliamente utilizados en estudios de biodiversidad. Las ovejas de las Islas Canarias fueron las más distantes genéticamente de las de México. Se utilizó un algoritmo que infiere una mezcla de los genotipos de la población, es decir, que alguno de los ancestros pertenece a otra población. El número de poblaciones inferidas (K) fue de 2 a 7 y el número total iteraciones fue de 800000. Cuando K=2 el programa asignó en un cluster las razas Palmera y Canaria y en el otro todas las demás. Cuando K=3 se agruparon las chiapanecas, la Palmera sola y la Merino, Sopravissana y Canaria. Con K=4 se agruparon las chiapanecas en un cluster, la Merino y Sopravissana en otro y la Palmera y Canaria independientes. Con el valor de K=5, las de Chiapas se agruparon en uno y las otras cada una independiente. Con K=6 se mantuvieron unidas Chamula y Café y con K=7 el programa asignó a las razas Chiapas, Chamula y a la Café en clusters independientes, aunque se percibe una fuerte influencia de la Chamula en la Café. La Palmera quedó parcialmente dividida ente dos clusters, indicando que puede haber individuos genéticamente diferentes dentro de esta población. El Borrego Chiapas posee una gran individualidad y diversidad genéticas

Genetic diversity of brazilian buffaloes (Bubalus bubalis) using DNA microsatellites.

Foi estudada a diversidade genética de búfalos do Brasil utilizando-se vinte e cinco marcadores microssatélites (CSSM41, CSSM8, CSRM60, CSSM33, BM1818, HEL13, MAF65, CSSME70, HSC, BRN, CSSM36, CSSM22, HAUT24, BM1824, SRCRSP8, TGLA227, ILSTS33, INRA23, BM8125, CSSM19, INRA37, CSSM66, ILSTS011, OarFCB48, SPS115). Foram analisadas amostras colhidas ao acaso de cinco populações, ou seja, raças Carabao, Jafarabadi, Mediterrâneo e Murrah, mais o tipo Baio. Em geral, os valores para a diferença entre as heterozigosidades (Ho - He) foram bastantes pequenas, significando equilíbrio nos marcadores utilizados para este tipo de estudo. Os valores do GST demonstraram um nível alto de diferenciação genética e os da estatística F: Fis (f), Fst (q) e Fit (F) demonstraram que os marcadores utilizados permitem inferir informações adequadas sobre as populações, podendo-se deduzir que os grupos Baio, Carabao, Jafarabadi e Mediterrâneo apresentam-se mais homogêneos que o grupo Murrah, o qual mostra níveis altos de endogamia. Os resultados dos estudos de distância genética mostraram que as populações de Baio, Mediterraneo e Murrah, agrupando-se em um cluster comum, demonstra alta similaridade genética, não obstante as suas divergências fenotípicas, confirmando que o grupo Carabao constitui uma diferente subespécie. Os resultados, principalmente das populações de Baio e Carabao, mostram o êxito do trabalho de conservação genética e a necessidade de se desenvolver novas estratégias para a conservação do germoplasma dos búfalos do Brasil

Distâncias genéticas em equinos (Equus caballus) por meio de marcadores microssatélites.

A raça Marajoara é bastante difundida e utilizada nas fazendas da ilha de Marajó e está sendo mantida em conservação no Banco de Germoplasma Animal da Amazônia Oriental ? BAGAM, da Embrapa Amazônia Oriental, sendo altamente adaptada às condições climáticas e ao relevo que caracterizam essa região. Foram utilizadas amostras da raça Marajoara (54), Puruca (47),Mangalarga (30), Puro Sangue Inglês (47), Árabe (25), Pantaneiro (63) coletados no Brasil e Lusitano (93), Árabe (48), Asturcon (39), Pura Raça Espanhola (60), Puro Sangue Inglês (46), Losino(59), Mallorquina (30), Menorquina (69) e Potoka (27) coletados na Espanha. Foram utilizados 22iniciadores (HTG4, AHT4, HMS7, ASB2, ASB17, HMS6, ASB23, HTG10, HMS3, LEX33, T287, T294,T297, T301, T312, T321, T325, T333, T341, T394, T343 e T344) amplificados pelo método de Reação em Cadeia da Polimerase (PCR). Os produtos da PCR foram separados em gel desnaturante de poliacrilamida 6%. Foram detectados 236 alelos, com média igual a 7,5 alelos/locus, variando entre 16 e 6 alelos. As médias de Conteúdo de Informação Polimórfica (PIC) e as heterozigosidades observadas (Ho) e esperadas (He), conforme as raças estudadas, foram respectivamente, 0,7610, 0,7873 e 0,7413. A estimativa da estatística F de Wright (1978) mostrou que a variação entre as raças foi maior (Fst 8,1%) do que dentro delas (Fis 0,78%), demonstrando que a diferenciação genética neste estudo foi maior entre as raças do que dentro de cada uma delas. Foram observados poucos desvios em relação ao equilíbrio de Hardy ? Weinberg. A menor distância genética observada foi entre a raça Marajoara e a Puruca seguida da Mangalarga. Os resultados sugerem que a raça Marajoara representa um grupo genético claramente distinto deoutras raças excetuando-se a Puruca que pode ser utilizada como reservatório de genes para esta, com razoável variabilidade genética. Medidas de conservação e manejo devem ser intensificadas nesse importante recurso genético brasileiro a fim de evitar a sua descaracterização e perda de identidade genética

Genetic diversity in native and commercial breeds of pigs in Portugal assessed by microsatellites

Population structure and genetic diversity in the Portuguese native breeds of pigs Alentejano (AL), Bísaro (BI), and Malhado de Alcobaça (MA) and the exotic breeds Duroc (DU), Landrace (LR), Large White (LW), and Pietrain were analyzed by typing 22 microsatellite markers in 249 individuals. In general, the markers used were greatly polymorphic, with mean total and effective number of alleles per locus of 10.68 and 4.33, respectively, and an expected heterozygosity of 0.667 across loci. The effective number of alleles per locus and expected heterozygosity were greatest in BI, LR, and AL, and least in DU. Private alleles were found in 9 of the 22 markers analyzed, mostly in AL, but also in the other breeds, with the exception of LW. The proportion of loci not in Hardy-Weinberg equilibrium in each breed analyzed ranged between 0.23 (AL) and 0.41 (BI, LW, and Pietrain), mostly because of a less than expected number of heterozygotes in those loci. With the exception of MA, all breeds showed a significant deficit in heterozygosity (F(IS); P < 0.05), which was more pronounced in BI (F(IS) = 0.175) and AL (F(IS) = 0.139), suggesting that inbreeding is a major concern, especially in these breeds that have gone through a genetic bottleneck in the recent past. The analysis of relationships among breeds, assessed by different methods, indicates that DU and AL are the more distanced breeds relative to the others, with the closest relationship being observed between LR and MA. The degree of differentiation between subpopulations (F(ST)) indicates that 0.184 of the total genetic variability can be attributed to differences among breeds. The analysis of individual distances based on allele sharing indicates that animals of the same breed generally cluster together, but subdivision is observed in the BI and LR breeds. Furthermore, the analysis of population structure indicates there is very little admixture among breeds, with each one being identified with a single ancestral population. The results of this study confirm that native breeds of pigs represent a very interesting reservoir of allelic diversity, even though the current levels of inbreeding raise concerns. Therefore, appropriate conservation efforts should be undertaken, such as adopting strategies aimed at minimizing inbreeding, to avoid further losses of genetic diversity

Genetic footprints of iberian cattle in America 500 years after the arrival of Columbus.

American Creole cattle presumably descend from animals imported from the Iberian Peninsula during the period of colonization and settlement, through different migration routes, andmay have also suffered the influence of cattle directly imported from Africa. The introduction of European cattle, which began in the 18th century, and later of Zebu from India, has threatened the survival of Creole populations, some of which have nearly disappeared or were admixed with exotic breeds. Assessment of the genetic status of Creole cattle is essential for the establishment of conservation programs of these historical resources. Methodology/Principal Findings: We sampled 27 Creole populations, 39 Iberian, 9 European and 6 Zebu breeds. We used microsatellite markers to assess the origins of Creole cattle, and to investigate the influence of different breeds on their genetic make-up. The major ancestral contributions are from breeds of southern Spain and Portugal, in agreement with the historical ports of departure of ships sailing towards the Western Hemisphere. This Iberian contribution to Creoles may also include some African influence, given the influential role that African cattle have had in the development of Iberian breeds, but the possibility of a direct influence on Creoles of African cattle imported to America can not be discarded. In addition to the Iberian influence, the admixture with other European breeds was minor. The Creoles from tropical areas, especially those from the Caribbean, show clear signs of admixture with Zebu. Conclusions/Significance: Nearly five centuries since cattle were first brought to the Americas, Creoles still show a strong and predominant signature of their Iberian ancestors. Creole breeds differ widely from each other, both in genetic structure and influences from other breeds. Efforts are needed to avoid their extinction or further genetic erosion, which would compromise centuries of selective adaptation to a wide range of environmental conditions

Indicator for patient safety: Readmission within 30 days for nosocomial infection.

Objetivos: Describir la frecuencia de reingresos en 30 días por infección nosocomial en el “Hospital Torrecárdenas” de Almería. Materiales y métodos: 25.653 episodios. El reingreso por infección nosocomial (IN): proporción de pacientes al alta de cada uno de los episodios hospitalarios durante el periodo de estudio que son reingresados de modo urgente en 30 días con IN, ya conste como diagnóstico principal del nuevo ingreso. Resultados: Proporción de reingresos por IN es 2,6‰ (IC95% 2,0 – 3,3), que supone un total de 67 episodios de reingreso por IN (5,0% del total). Unidad con mas reingresos por IN: UGC de urología 9,7‰ (IC95% 1,9 – 17,4)). Mayor probabilidad de reingreso se asocia al sexo masculino, a una mayor edad, a determinados diagnósticos y servicio al alta. Las unidades de hospitalización con más reingresos: salud mental, obstetricia, oncología radioterápica, oncología y reumatología, sin embargo, las unidades con mas reingresos por IN: urología, angiología y C.Vascular, oncología, neumología y cardiología. Las enfermedades que destacan como reingreso por IN: “otras alteraciones de uretra y vías urinaria” “infección postoperatoria, no clasificada en otro lugar”. Discusión y conclusiones: Se ha caracterizado el patrón de reingresos por IN en el hospital de Torrecárdenas, utilizándose para ser utilizado para implementar acciones preventivas y como un indicador de calidad asistencial.Objectives: To describe the frequency of readmission within 30 days for nosocomial infection at the “Hospital Torrecardenas” of Almeria. Material and methods: The source is from 1/1/2007 to 31/1/2008 CMBDh, analyzed 25,653 episodes. Readmissions for nosocomial infection (NI): proportion of patients at discharge for each hospital episode during the study period that are so urgently readmitted in 30 days with IN, and is credited as the primary diagnosis of new entry or as a diagnosis secondary. Descriptive analysis of variables such as age, sex, high service, month high, episode duration and primary diagnosis, using association between variables.Results: The proportion of readmissions by IN is 2.6 ‰ (IC95% 2,0–3,3), representing a total of 67 episodes of readmission for IN (5.0% of readmissions). The unit with more readmissions for IN was the hospital's urology unit (9.7 ‰ (IC95% 1,9–17,4)). A higher probability of readmission was associated with male gender, older age, certain diagnostic and service to hospital discharge. Inpatient units with more readmissions: mental health, obstetrics, radiation oncology, oncology and rheumatology, however, drives with more readmissions IN: urology, Angiology and Vascular C., oncology, pulmonology and cardiology. The diseases that stand out as readmission for IN are “other disorders of urethra and urinary tract” “postoperative infection, not elsewhere classified”. Conclusions: We have characterized the pattern of readmissions due to infections in the hospital Torrecárdenas, used to be used to implement preventive measures as an indicator of quality

Clonal chromosomal mosaicism and loss of chromosome Y in elderly men increase vulnerability for SARS-CoV-2

The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2, COVID-19) had an estimated overall case fatality ratio of 1.38% (pre-vaccination), being 53% higher in males and increasing exponentially with age. Among 9578 individuals diagnosed with COVID-19 in the SCOURGE study, we found 133 cases (1.42%) with detectable clonal mosaicism for chromosome alterations (mCA) and 226 males (5.08%) with acquired loss of chromosome Y (LOY). Individuals with clonal mosaic events (mCA and/or LOY) showed a 54% increase in the risk of COVID-19 lethality. LOY is associated with transcriptomic biomarkers of immune dysfunction, pro-coagulation activity and cardiovascular risk. Interferon-induced genes involved in the initial immune response to SARS-CoV-2 are also down-regulated in LOY. Thus, mCA and LOY underlie at least part of the sex-biased severity and mortality of COVID-19 in aging patients. Given its potential therapeutic and prognostic relevance, evaluation of clonal mosaicism should be implemented as biomarker of COVID-19 severity in elderly people. Among 9578 individuals diagnosed with COVID-19 in the SCOURGE study, individuals with clonal mosaic events (clonal mosaicism for chromosome alterations and/or loss of chromosome Y) showed an increased risk of COVID-19 lethality