A Value of Information Approach to Data Quality Objectives for the Hanford High-Level Waste Tanks

This report summarizes a Pacific Northwest Laboratory review of the organic-nitrate reaction safety issue in the Hanford single-shell tanks. This study employed a decision analytic method known as Value of Information (VOI). VOI analysis is a special form of decision analysis that has an information collection alternative as one of the initial decision choices. This type of decision analysis, therefore results in the ability to specify the preferred information collection alternative, taking into account all information gathering and other relevant alternatives. For example, the risk reduction benefit associated with further sampling to quantify total organic carbon inventory or to improve information on energetics can be compared to the risk reduction benefit of better temperature monitoring, operational restrictions, or mitigation by moisture control. This approach allows freedom from built-in assumptions, e.g., that all tanks must be sampled to some degree or that all tanks must be deemed intrinsically safe by some means or another. It allows for each tank management decision to be judged in terms of risk reduction from the current state of affairs, and for that state of affairs to be continuously updated to incorporate new information on tank contents, the phenomenology of safety issues, or the effectiveness of mitigation schemes

Effectiveness evaluation of data mining based IDS

Proceeding of: 6th Industrial Conference on Data Mining, ICDM 2006, Leipzig, Germany, July 14-15, 2006.Data mining has been widely applied to the problem of Intrusion Detection in computer networks. However, the misconception of the underlying problem has led to out of context results. This paper shows that factors such as the probability of intrusion and the costs of responding to detected intrusions must be taken into account in order to compare the effectiveness of machine learning algorithms over the intrusion detection domain. Furthermore, we show the advantages of combining different detection techniques. Results regarding the well known 1999 KDD dataset are shown.Publicad

Preparation and Characterization of the Extracellular Domain of Human Sid-1

In C. elegans, the cell surface protein Sid-1 imports extracellular dsRNA into the cytosol of most non-neuronal cells, enabling systemic spread of RNA interference (RNAi) throughout the worm. Sid-1 homologs are found in many other animals, although for most a function for the protein has not yet been established. Sid-1 proteins are composed of an N-terminal extracellular domain (ECD) followed by 9–12 predicted transmembrane regions. We developed a baculovirus system to express and purify the ECD of the human Sid-1 protein SidT1. Recombinant SidT1 ECD is glycosylated and spontaneously assembles into a stable and discrete tetrameric structure. Electron microscopy (EM) and small angle x-ray scattering (SAXS) studies reveal that the SidT1 ECD tetramer is a compact, puck-shaped globular particle, which we hypothesize may control access of dsRNA to the transmembrane pore. These characterizations provide inroads towards understanding the mechanism of this unique RNA transport system from structural prospective

Hemotin, a regulator of phagocytosis encoded by a small ORF and xonserved across metazoans

Translation of hundreds of small ORFs (smORFs) of less than 100 amino acids has recently been revealed in vertebrates and Drosophila. Some of these peptides have essential and conserved cellular functions. In Drosophila, we have predicted a particular smORF class encoding ~80 aa hydrophobic peptides, which may function in membranes and cell organelles. Here, we characterise hemotin, a gene encoding an 88aa transmembrane smORF peptide localised to early endosomes in Drosophila macrophages. hemotin regulates endosomal maturation during phagocytosis by repressing the cooperation of 14-3-3ζ with specific phosphatidylinositol (PI) enzymes. hemotin mutants accumulate undigested phagocytic material inside enlarged endo-lysosomes and as a result, hemotin mutants have reduced ability to fight bacteria, and hence, have severely reduced life span and resistance to infections. We identify Stannin, a peptide involved in organometallic toxicity, as the Hemotin functional homologue in vertebrates, showing that this novel regulator of phagocytic processing is widely conserved, emphasizing the significance of smORF peptides in cell biology and disease

Nucleases as a barrier to gene silencing in the cotton boll weevil, Anthonomus grandis.

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The Drosophila melanogaster host model

The deleterious and sometimes fatal outcomes of bacterial infectious diseases are the net result of the interactions between the pathogen and the host, and the genetically tractable fruit fly, Drosophila melanogaster, has emerged as a valuable tool for modeling the pathogen–host interactions of a wide variety of bacteria. These studies have revealed that there is a remarkable conservation of bacterial pathogenesis and host defence mechanisms between higher host organisms and Drosophila. This review presents an in-depth discussion of the Drosophila immune response, the Drosophila killing model, and the use of the model to examine bacterial–host interactions. The recent introduction of the Drosophila model into the oral microbiology field is discussed, specifically the use of the model to examine Porphyromonas gingivalis–host interactions, and finally the potential uses of this powerful model system to further elucidate oral bacterial-host interactions are addressed

Toward a contingency model of strategic risk taking

Includes bibliographical references (p. 20-25)