The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities

© 2015 Elsevier Ltd. Soil is composed of a mosaic of different rocks and minerals, usually considered as an inert substrata for microbial colonization. However, recent findings suggest that minerals, in soils and elsewhere, favour the development of specific microbial communities according to their mineralogy, nutritive content, and weatherability. Based upon recent studies, we highlight how bacterial communities are distributed on the surface of, and in close proximity to, minerals. We also consider the potential role of the mineral-associated bacterial communities in mineral weathering and nutrient cycling in soils, with a specific focus on nutrient-poor and acidic forest ecosystems. We propose to define this microbial habitat as the mineralosphere, where key drivers of the microbial communities are the physicochemical properties of the minerals

Optimal prediction for moment models: Crescendo diffusion and reordered equations

A direct numerical solution of the radiative transfer equation or any kinetic equation is typically expensive, since the radiative intensity depends on time, space and direction. An expansion in the direction variables yields an equivalent system of infinitely many moments. A fundamental problem is how to truncate the system. Various closures have been presented in the literature. We want to study moment closure generally within the framework of optimal prediction, a strategy to approximate the mean solution of a large system by a smaller system, for radiation moment systems. We apply this strategy to radiative transfer and show that several closures can be re-derived within this framework, e.g. $P_N$, diffusion, and diffusion correction closures. In addition, the formalism gives rise to new parabolic systems, the reordered $P_N$ equations, that are similar to the simplified $P_N$ equations. Furthermore, we propose a modification to existing closures. Although simple and with no extra cost, this newly derived crescendo diffusion yields better approximations in numerical tests.Comment: Revised version: 17 pages, 6 figures, presented at Workshop on Moment Methods in Kinetic Gas Theory, ETH Zurich, 2008 2 figures added, minor correction

Cations extraction of sandy-clay soils from Cavado valley, Portugal, using sodium salts solutions

Cases of contamination by metals in the water wells of the Cavado Valley in north-west Portugal can be attributed to the heavy leaching of clay soils due to an excess of nitrogen resulting from the intensive use of fertilisers in agricultural areas. This work focuses on the natural weathering characteristics of soils, particularly the clay material, through the study of samples collected near the River Cavado. Samples taken from various sites, after physico-chemical characterisation, were subjected to clay dissolution tests, using sodium salts of different ionic forces, to detect the relationship between certain physico-chemical parameters of water, such as pH, nitrate, chloride and sulphate content, in the dissolution of clay and the subsequent extraction of such cations as Al, Fe and K. In acidic sandy clay soils, the mineralogical composition of which was characterised by a predominance of quartz, micas, kaolinite and K-feldspars, decreases of the clay material/water pH ratio increases dissolution of the micaceous and K-feldspars phases. The presence of nitrates in the aqueous solution apparently advanced the extraction of all three cations Al, Fe and K. The specific surface area of the clay material showed a significant correlation with the main kinetic parameters of cation extraction.Têm ocorrido casos de contaminações de águas de poços, por metais, no vale do Rio Cávado, região noroeste de Portugal. A princípio, poderiam ser explicáveis pela elevada lixiviação dos solos arenoargilosos da região, quando da prática de adubações intensivas de nitrogênio em áreas agrícolas. Assim, estudaram-se as características do intemperismo natural dos solos, particularmente da fração argila, característica da margem norte do rio Cávado. Coletaram-se amostras de vários locais, que foram submetidas, após caracterização físico-química, a ensaios de dissolução a partir de soluções de sais de sódio com diferentes forças iônicas. O objetivo foi observar as relações de determinados parâmetros físico-químicos da água, tais como: pH, nitratos, cloretos e sulfatos na dissolução das argilas e a conseqüente extração de espécies químicas tais como Al, K e Fe. Para solos areno-argilosos, ácidos, cuja composição mineralógica se caracteriza por um predomínio de quartzo, micas, caulinita e feldspato-K, o abaixamento do pH da suspensão solo/água promove a solubilização das fases micáceas e feldspáticas. A presença do nitrato nas soluções aquosas promoveu aparentemente a extração de todos os três cátions: Al, K e Fe. O efeito da área superfícial específica das partículas dos solos condicionou fortemente vários dos parâmetros cinéticos estudados relativos à extração dos cátions.(undefined

Mineral Type and Solution Chemistry Affect the Structure and Composition of Actively Growing Bacterial Communities as Revealed by Bromodeoxyuridine Immunocapture and 16S rRNA Pyrosequencing

© 2016, Springer Science+Business Media New York. Understanding how minerals affect bacterial communities and their in situ activities in relation to environmental conditions are central issues in soil microbial ecology, as minerals represent essential reservoirs of inorganic nutrients for the biosphere. To determine the impact of mineral type and solution chemistry on soil bacterial communities, we compared the diversity, composition, and functional abilities of a soil bacterial community incubated in presence/absence of different mineral types (apatite, biotite, obsidian). Microcosms were prepared containing different liquid culture media devoid of particular essential nutrients, the nutrients provided only in the introduced minerals and therefore only available to the microbial community through mineral dissolution by biotic and/or abiotic processes. By combining functional screening of bacterial isolates and community analysis by bromodeoxyuridine DNA immunocapture and 16S rRNA gene pyrosequencing, we demonstrated that bacterial communities were mainly impacted by the solution chemistry at the taxonomic level and by the mineral type at the functional level. Metabolically active bacterial communities varied with solution chemistry and mineral type. Burkholderia were significantly enriched in the obsidian treatment compared to the biotite treatment and were the most effective isolates at solubilizing phosphorous or mobilizing iron, in all the treatments. A detailed analysis revealed that the 16S rRNA gene sequences of the OTUs or isolated strains assigned as Burkholderia in our study showed high homology with effective mineral-weathering bacteria previously recovered from the same experimental site

Impact of vegetation change on the mobility of uranium- and thorium-series nuclides in soils

International audienceThe effect of land cover change on chemical mobility and soil response was investigated using short- and long-lived nuclides from the U- and Th series. Indeed, the matching of these nuclides half-live to the pedogenic processes rates make these nuclides especially suitable to investigate either time or mechanism of transfers within a soil-water-plant system. This study was carried out from the experimental Breuil-Chenue site (Morvan mountains, France). The native forest (150 year-old) was partially clear-felled and replaced in 1976 by mono-specific plantations distributed in different stands. Following this cover-change, some mineralogical changes in the acid brown soil were recognized (Mareschal, 2008). Three soil sections were sampled under the native forest and the replanted oak and Douglas spruce stands respectively. The (238U), (234U), (230Th), (226Ra), (232Th) and (228Ra) activities were analysed by thermal ionization mass spectrometry (TIMS), inductively coupled plasma mass spectrometry (MC-ICPMS) and gamma spectrometry. Significant differences in U, Th, and Ra activities were observed between the soils located under the native forest or the replanted-trees stands, mostly dominated by a large uranium mobilization from the replanted soils. Moreover, all the investigated U and Th-series activity ratios show a contrasted trend between the shallowest horizons (0-50cm) and the deepest one (below 50cm), demonstrating the chemical effect of the vegetation change on the shallow soil layers. Using a continuous open-system leaching model, the coupled radioactive disequilibria measured in the different soil layers permit to quantify the rate of the radionuclides mobilitie

Li isotope compositions of clay minerals: what message?

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Clay transformations following a leaching experiment on an acid brown soil

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Root distribution of Fagus sylvatica in a chronosequence in western France

International audienceThe distribution of fine (<2 mm diameter) and small roots (2–20 mm diameter) was investigated in a chronosequence consisting of 9-year-old, 26-year-old, 82-year-old and 146-year-old European beech (Fagus sylvatica) stands. A combination of trench wall observations and destructive root sampling was used to establish whether root distribution and total biomass of fine and small roots varied with stand age. Root density decreased with soil depth in all stands, and variability appeared to be highest in subsoil horizons, especially where compacted soil layers occurred. Roots clustered in patches in the top 0–50 cm of the soil or were present as root channels at greater depths. Cluster number, cluster size and number of root channels were comparable in all stands, and high values of soil exploitation occurred throughout the entire chronosequence. Overall fine root biomass at depths of 0–120 cm ranged from 7.4 Mg ha−1 to 9.8 Mg ha−1, being highest in the two youngest stands. Small root biomass ranged from 3.6 Mg ha−1 to 13.3 Mg ha−1. Use of trench wall observations combined with destructive root samples reduced the variability of these estimates. These records showed that variability in fine root distribution depended more on soil depth and edaphic conditions than on stand age, and suggest that trench wall studies provide a useful tool to improve estimates of fine root biomass

Insight into the use of U- and Th-series nuclides for soil-production rates determination

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Probing silicate weathering reactions in soils with B isotopes

The determination of the mechanisms and extent of soil mineral weathering can be challenging, and the caveats reside in 1) difficulty identifying minerals that are actually involved in weathering reactions, 2) non-stoichiometric release of cations during weathering processes due to coupled dissolution, precipitation and transformation reactions and, 3) impact of vegetation activity on elemental cycles in upper soil horizons.To better characterize mechanisms controlling mineral weathering in soils and trace the evolution of B concentration and isotope ratios during chemical weathering, quantitative mineralogical analyses were coupled to B isotopes in a group of minerals (biotite, muscovite, K-feldspar and albite). Samples were selected along an Alocrisol (Alumic Cambisol, WRB FAO) soil profile from the bedrock (at 130 cm depth) up to 20 cm depth, developed on granitic bedrock in the Breuil-Chenue forest (France). The samples consist of residual primary minerals associated with weathering secondary phases (vermiculite, kaolinite…) in varying proportions.The B isotopic compositions of the most pristine minerals span a very narrow range of values (around −31‰), whereas all secondary phases point to a much heavier value (around −16‰), regardless of mineralogy. Our results also show a mineral-dependent evolution of B concentration or isotopic composition as weathering progresses: no variation is observed during dissolution of K-feldspars; B behaves like a very mobile element in micas (biotite and muscovite), whereas it concentrates in weathered products derived from albite. However, rates of B concentrations and changes in isotopic compositions appear to be much faster than those inferred from mineralogy or major element concentrations determined by XRD and bulk chemical analyses, respectively. These results indicate that B is involved in very early weathering reactions and raises the question of its actual location in the structure of the various soil minerals as well as its pathway to solution