One-dimensional particle-in-cell simulation of a current-free double layer in an expanding plasma

A one-dimensional particle-in-cell code using Monte Carlo collision techniques (MCC/PIC) for both ions and electrons is used to simulate our earlier experimental results which showed that a current-free electric double layer (DL) can form in a plasma expanding along a diverging magnetic field. These results differ from previous experimental or simulation systems where the double layers are driven by a current or by imposed potential differences. Both experiment and simulation show accelerated ions with energies up to about 60 eV on the low potential side of the plasma. A new numerical method is added to the conventional PIC scheme to simulate inductive electron heating, as distinct from the more common capacitively driven simulations. A loss process is introduced along the axis of the simulation to mimic the density decrease along the axis of an expanding plasma in a diverging magnetic field. The results from the MCC/PIC presented here suggest that the expansion rate compared to the ionization frequency is a critical parameter for the existence of the DL. For the DL to be absolutely current free, the source wall has to be allowed to charge: having both ends of the simulation at the same potential always resulted in a current flow. Also, the effect of the neutral pressure and of the size of the diffusion chamber are investigated. Finally we show that this particular type of DL has electrons in Boltzmann equilibrium and that it creates a supersonic ion beam

Time-dependent strain accumulation and release at island arcs : implications for the 1946 Nankaido earthquake

Thesis. 1975. Ph.D.--Massachusetts Institute of Technology. Dept. of Earth and Planetary Sciences.Vita.Bibliography: leaves 256-266.by Albert Turner Smith, Jr.Ph.D

2-(Pyridin-2-yl)-1,3-oxathiane

The title compound, C9H11NOS, exhibits a unique structural motif, with free rotation of the aliphatic oxathiane ring about the C—C bond connecting this moiety to the aromatic pyridine ring. The structure elucidation was undertaken due to its potential as a bidentate ligand for organometallic complexes. The oxathiane ring adopts the expected chair conformation, with the S atom in proximity to the N atom on the pyridine ring. The corresponding S—C—C—N torsion angle is 69.07 (14)°. In the crystal, mol­ecules aggregate as centrosymmetric pairs connected by pairs of C—H⋯N hydrogen bonds

Elucidation of Directionality for Co-Expressed Genes: Predicting Intra-Operon Termination Sites

We present a novel framework for inferring regulatory and sequence-level information from gene co-expression networks. The key idea of our methodology is the systematic integration of network inference and network topological analysis approaches for uncovering biological insights. We determine the gene co-expression network of Bacillus subtilis using Affymetrix GeneChip time series data and show how the inferred network topology can be linked to sequence-level information hard-wired in the organism's genome. We propose a systematic way for determining the correlation threshold at which two genes are assessed to be co-expressed by using the clustering coefficient and we expand the scope of the gene co-expression network by proposing the slope ratio metric as a means for incorporating directionality on the edges. We show through specific examples for B. subtilis that by incorporating expression level information in addition to the temporal expression patterns, we can uncover sequence-level biological insights. In particular, we are able to identify a number of cases where (i) the co-expressed genes are part of a single transcriptional unit or operon and (ii) the inferred directionality arises due to the presence of intra-operon transcription termination sites.Comment: 7 pages, 8 figures, accepted in Bioinformatic