Developments in benthos and fish in gullies in an area closed for human use in the Wadden Sea : 2002-2016

In the eastern Dutch Wadden Sea an area was closed for anthropogenic bottom-disturbing activities in 2005. The ‘natural’ development of the fauna in gullies located within this area was monitored and compared with the development in gullies outside the closed area. Emphasis was put on sampling the benthic fauna (every autumn). Eleven years after closure (2016) the fish population was sampled again and additional benthic samples were taken, the sea floor was mapped and the fishing pressures were calculated. Preliminary results show that throughout the investigated period the open gullies were subject to moderate shrimp fishing pressures and that the closed gullies were not fished. Closure of the gullies has not yet led to the formation of biogenic structures on the seafloor, but has led to an increase in the species richness of small benthic fauna and to subtle changes in benthic species composition. Due to the limited availability of data it was not possible to detect statistically significant differences in the fish population. Sinds november 2005 is een klein deel van de Nederlandse Waddenzee gesloten voor (potentieel) schadelijke menselijke activiteiten. Het gebied ligt ten zuiden van Rottumerplaat en Rottumeroog en beslaat zo’n 7400 hectare. Doel van de sluiting is om de ongestoorde ontwikkeling van de natuur in de Waddenzee te kunnen volgen. Dit rapport beschrijft de tussentijdse resultaten, 11 jaar naar sluiting. In het monitorprogramma is de nadruk gelegd op veranderingen in de bodemfauna die jaarlijks en vanaf 2002 in het najaar bemonsterd worden. In 2016 zijn aanvullende bemonsteringen uitgevoerd. In dat jaar is de visgemeenschap herbemonsterd, zijn additionele bodemmonsters genomen gericht op het bemonsteren van de wat grotere organismen, zijn de karakteristieken van het bodemoppervlak in kaart gebracht en is de visserijdruk in het gebied berekend. Voorlopige resultaten laten zien dat in de open geulen garnalenvisserij heeft plaatsgevonden gedurende de hier bestudeerde periode en dat in de gesloten geulen geen visserij heeft plaatsgevonden na 2005. Sluiting van de geulen heeft nog niet geleid tot vestiging van biogene structuren. Wel is de soortenrijkdom toegenomen en hebben er zich subtiele veranderingen in bodemdiersamenstelling voorgedaan. Vanwege de beperkte hoeveelheid gegevens was het niet mogelijk om uitspraken te doen over veranderingen in de vispopulatie

Poor accuracy of freehand cup positioning during total hip arthroplasty

Several studies have demonstrated a correlation between the acetabular cup position and the risk of dislocation, wear and range of motion after total hip arthroplasty. The present study was designed to evaluate the accuracy of the surgeon’s estimated position of the cup after freehand placement in total hip replacement. Peroperative estimated abduction and anteversion of 200 acetabular components (placed by three orthopaedic surgeons and nine residents) were compared with measured outcomes (according to Pradhan) on postoperative radiographs. Cups were placed in 49.7° (SD 6.7) of abduction and 16.0° (SD 8.1) of anteversion. Estimation of placement was 46.3° (SD 4.3) of abduction and 14.6° (SD 5.9) of anteversion. Of more interest is the fact that for the orthopaedic surgeons the mean inaccuracy of estimation was 4.1° (SD 3.9) for abduction and 5.2° (SD 4.5) for anteversion and for their residents this was respectively, 6.3° (SD 4.6) and 5.7° (SD 5.0). Significant differences were found between orthopaedic surgeons and residents for inaccuracy of estimation for abduction, not for anteversion. Body mass index, sex, (un)cemented fixation and surgical approach (anterolateral or posterolateral) were not significant factors. Based upon the inaccuracy of estimation, the group’s chance on future cup placement within Lewinnek’s safe zone (5–25° anteversion and 30–50° abduction) is 82.7 and 85.2% for anteversion and abduction separately. When both parameters are combined, the chance of accurate placement is only 70.5%. The chance of placement of the acetabular component within 5° of an intended position, for both abduction and anteversion is 21.5% this percentage decreases to just 2.9% when the tolerated error is 1°. There is a tendency to underestimate both abduction and anteversion. Orthopaedic surgeons are superior to their residents in estimating abduction of the acetabular component. The results of this study indicate that freehand placement of the acetabular component is not a reliable method

A General Treatment of Solubility. 3. Principal Component Analysis (PCA) of the Solubilities of Diverse Solutes in Diverse Solvents

Article discussing a general treatment of solubility and principle component analysis (PCA) of the solubilities of diverse solutes in diverse solvents

Drug discovery prospect from untapped species: Indications from approved natural product drugs

10.1371/journal.pone.0039782PLoS ONE77

Uncertainty-aware estimation of population abundance using machine learning

Machine Learning is widely used for mining collections, such as images, sounds, or texts, by classifying their elements into categories. Automatic classification based on supervised learning requires groundtruth datasets for modeling the elements to classify, and for testing the quality of the classification. Because collecting groundtruth is tedious, a method for estimating the potential errors in large datasets based on limited groundtruth is needed. We propose a method that improves classification quality by using limited groundtruth data to extrapolate the po-tential errors in larger datasets. It significantly improves the counting of elements per class. We further propose visualization designs for understanding and evaluating the classification un-certainty. They support end-users in considering the impact of potential misclassifications for interpreting the classification output. This work was developed to address the needs of ecologists studying fish population abundance using computer vision, but generalizes to a larger range of applications. Our method is largely applicable for a variety of Machine Learning technologies, and our visualizations further support their transfer to end-users

POTENTIAL EFFECTS OF CLIMATE CHANGE ON ELEVATIONAL DISTRIBUTIONS OF TROPICAL BIRDS IN SOUTHEAST ASIA

Environmental conditions during the neonatal period can affect the growth, physiology, behavior, and immune function of birds. In many avian studies the nestling environment includes investigator handling of young, which may be stressful. While neonatal handling is known to affect the adult phenotype in rats, the effects of handling on development have rarely been examined in wild birds. We examined the effect of short, repeated periods of neonatal handling on avian growth and immune system development. We subjected American Kestrels (Falco sparverius) and European Starlings (Sturnus vulgaris) to 15 min of daily investigator handling throughout the nestling period, while controls remained undisturbed. Immediately prior to fledging we assessed cutaneous immunity, humoral immunity, mass, and degree of fluctuating asymmetry. Daily handling did not significantly affect any of these measurements. We also addressed the possibility that treatment differences would appear only when birds were challenged with a more substantial stressor by bringing birds into captivity for 24 hr. Captivity did not affect mass, but significantly lowered the cutaneous immune response, although this was independent of treatment. Therefore, brief periods of investigator handling did not appear to affect immune or morphological development in these species, whereas 24 hr of captivity resulted in suppressed cutaneous immune responses

A circumpolar study unveils a positive non-linear effect oftemperature on arctic arthropod availability that may reduce therisk of warming-induced trophic mismatch for breeding shorebirds

Seasonally abundant arthropods are a crucial food source for many migratorybirds that breed in the Arctic. In cold environments, the growth and emergence ofarthropods are particularly tied to temperature. Thus, the phenology of arthropodsis anticipated to undergo a rapid change in response to a warming climate, potentiallyleading to a trophic mismatch between migratory insectivorous birds and their prey.Using data from 19 sites spanning a wide temperature gradient from the Subarcticto the High Arctic, we investigated the effects of temperature on the phenology andbiomass of arthropods available to shorebirds during their short breeding seasonat high latitudes. We hypothesized that prolonged exposure to warmer summertemperatures would generate earlier peaks in arthropod biomass, as well as higherpeak and seasonal biomass. Across the temperature gradient encompassed by ourstudy sites (>10°C in average summer temperatures), we found a 3-day shift inaverage peak date for every increment of 80 cumulative thawing degree-days.Interestingly, we found a linear relationship between temperature and arthropodbiomass only below temperature thresholds. Higher temperatures were associatedwith higher peak and seasonal biomass below 106 and 177 cumulative thawingdegree-days, respectively, between June 5 and July 15. Beyond these thresholds,no relationship was observed between temperature and arthropod biomass. Ourresults suggest that prolonged exposure to elevated temperatures can positivelyinfluence prey availability for some arctic birds. This positive effect could, in part,stem from changes in arthropod assemblages and may reduce the risk of trophicmismatch. Sarctic arthropods, arctic breeding shorebirds, climate warming, insectivorous birds,invertebrate biomass, phenology, trophic mismatcpublishedVersio

A Translocated Bacterial Protein Protects Vascular Endothelial Cells from Apoptosis

The modulation of host cell apoptosis by bacterial pathogens is of critical importance for the outcome of the infection process. The capacity of Bartonella henselae and B. quintana to cause vascular tumor formation in immunocompromised patients is linked to the inhibition of vascular endothelial cell (EC) apoptosis. Here, we show that translocation of BepA, a type IV secretion (T4S) substrate, is necessary and sufficient to inhibit EC apoptosis. Ectopic expression in ECs allowed mapping of the anti-apoptotic activity of BepA to the Bep intracellular delivery domain, which, as part of the signal for T4S, is conserved in other T4S substrates. The anti-apoptotic activity appeared to be limited to BepA orthologs of B. henselae and B. quintana and correlated with (i) protein localization to the host cell plasma membrane, (ii) elevated levels of intracellular cyclic adenosine monophosphate (cAMP), and (iii) increased expression of cAMP-responsive genes. The pharmacological elevation of cAMP levels protected ECs from apoptosis, indicating that BepA mediates anti-apoptosis by heightening cAMP levels by a plasma membrane–associated mechanism. Finally, we demonstrate that BepA mediates protection of ECs against apoptosis triggered by cytotoxic T lymphocytes, suggesting a physiological context in which the anti-apoptotic activity of BepA contributes to tumor formation in the chronically infected vascular endothelium

Complex morphology and functional dynamics of vital murine intestinal mucosa revealed by autofluorescence 2-photon microscopy

The mucosa of the gastrointestinal tract is a dynamic tissue composed of numerous cell types with complex cellular functions. Study of the vital intestinal mucosa has been hampered by lack of suitable model systems. We here present a novel animal model that enables highly resolved three-dimensional imaging of the vital murine intestine in anaesthetized mice. Using intravital autofluorescence 2-photon (A2P) microscopy we studied the choreographed interactions of enterocytes, goblet cells, enteroendocrine cells and brush cells with other cellular constituents of the small intestinal mucosa over several hours at a subcellular resolution and in three dimensions. Vigorously moving lymphoid cells and their interaction with constituent parts of the lamina propria were examined and quantitatively analyzed. Nuclear and lectin staining permitted simultaneous characterization of autofluorescence and admitted dyes and yielded additional spectral information that is crucial to the interpretation of the complex intestinal mucosa. This novel intravital approach provides detailed insights into the physiology of the small intestine and especially opens a new window for investigating cellular dynamics under nearly physiological conditions