Leaching losses from Kenyan maize cropland receiving different rates of nitrogen fertilizer

© The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nutrient Cycling in Agroecosystems 108 (2017): 195–209, doi:10.1007/s10705-017-9852-z.Meeting food security requirements in sub-Saharan Africa (SSA) will require increasing fertilizer use to improve crop yields, however excess fertilization can cause environmental and public health problems in surface and groundwater. Determining the threshold of reasonable fertilizer application in SSA requires an understanding of flow dynamics and nutrient transport in under-studied, tropical soils experiencing seasonal rainfall. We estimated leaching flux in Yala, Kenya on a maize field that received from 0 to 200 kg ha−1 of nitrogen (N) fertilizer. Soil pore water concentration measurements during two growing seasons were coupled with results from a numerical fluid flow model to calculate the daily flux of nitrate-nitrogen (NO3−-N). Modeled NO3−-N losses to below 200 cm for 1 year ranged from 40 kg N ha−1 year−1 in the 75 kg N ha−1 year−1 treatment to 81 kg N ha−1 year−1 in the 200 kg N ha−1 treatment. The highest soil pore water NO3−-N concentrations and NO3−-N leaching fluxes occurred on the highest N application plots, however there was a poor correlation between N application rate and NO3−-N leaching for the remaining N application rates. The drought in the second study year resulted in higher pore water NO3−-N concentrations, while NO3−-N leaching was disproportionately smaller than the decrease in precipitation. The lack of a strong correlation between NO3−-N leaching and N application rate, and a large decrease in flux between 120 and 200 cm suggest processes that influence NO3−-N retention in soils below 200 cm will ultimately control NO3−-N leaching at the watershed scale.Earth Institute, Columbia University; National Science Foundation IIA-0968211; Bill and Melinda Gates Foundatio

Effects of fertilizer on inorganic soil N in East Africa maize systems : vertical distributions and temporal dynamics

Author Posting. © Ecological Society of America, 2016. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecological Applications 26 (2016): 1907–1919, doi:10.1890/15-1518.1.Fertilizer applications are poised to increase across sub-Saharan Africa (SSA), but the fate of added nitrogen (N) is largely unknown. We measured vertical distributions and temporal variations of soil inorganic N following fertilizer application in two maize (Zea mays L.)-growing regions of contrasting soil type. Fertilizer trials were established on a clayey soil in Yala, Kenya, and on a sandy soil in Tumbi, Tanzania, with application rates of 0–200 kg N/ha/yr. Soil profiles were collected (0–400 cm) annually (for three years in Yala and two years in Tumbi) to examine changes in inorganic N pools. Topsoils (0–15 cm) were collected every 3–6 weeks to determine how precipitation and fertilizer management influenced plant-available soil N. Fertilizer management altered soil inorganic N, and there were large differences between sites that were consistent with differences in soil texture. Initial soil N pools were larger in Yala than Tumbi (240 vs. 79 kg/ha). Inorganic N pools did not change in Yala (277 kg/ha), but increased fourfold after cultivation and fertilization in Tumbi (371 kg/ha). Intra-annual variability in NO−3-N concentrations (3–33 μg/g) in Tumbi topsoils strongly suggested that the sandier soils were prone to high leaching losses. Information on soil inorganic N pools and movement through soil profiles can h vulnerability of SSA croplands to N losses and determine best fertilizer management practices as N application rates increase. A better understanding of the vertical and temporal patterns of soil N pools improves our ability to predict the potential environmental effects of a dramatic increase in fertilizer application rates that will accompany the intensification of African croplands.Earth Institute at Columbia University Cross-Cutting Initiative Grant; National Science Foundation PIRE Grant Grant Number: IIA-0968211; Bill and Melinda Gates Foundation Grant Number: OPP1023542-0

Tell el-Amarna Site Management Plan 2020

The archaeological landscape of Egypt is rich in tombs and temples but offers little in the way of intelligible and easily accessible places where ancient Egyptians actually lived. In Tell el-Amarna (Amarna for short) we have the greater part of a major city: its public buildings, its housing neighbourhoods, the decorated tombs of its governing class and the cemeteries of the ordinary people. Having been occupied for only about twenty years it preserves unique evidence for how people lived in the past. As the creation of Pharaoh Akhenaten, it also serves as a powerful introduction to the individual and his ideas. Archaeologists have worked at Amarna for over a century. But the place needs more than their expert attentions. Like many sites around the world, Amarna is threatened by the effects of rapid modernisation and population growth. The Site Management Plan presented here seeks to anchor Amarna more firmly to the current development policies of the Egyptian government. These emphasise the importance of cooperation amongst the varied sectors of Egyptian society, both those of the government and those constituted by local communities. The Plan seeks to guide the decision-making of the future in the hope of securing Amarna as an educational resource for generations to come. The Plan itself has been an exercise in co-operation. We wish to thank all those who have assisted. They comprise the many officials of the Ministry of Tourism and Antiquities, in Cairo and in the inspectorates of El-Minya Province, local community leaders at Amarna and, not least, representatives of the local inhabitants including those of school age

The effect of mineral and organic nutrient input on yields and nitrogen balances in western Kenya

Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Agriculture, Ecosystems & Environment 214 (2015): 10-20, doi:10.1016/j.agee.2015.08.006.Soil fertility declines constrain crop productivity on smallholder farms in sub-Saharan Africa. Government and non-government organizations promote the use of mineral fertilizer and improved seed varieties to redress nutrient depletion and increase crop yields. Similarly, rotational cropping with nitrogen (N)-fixing legume cover crops or trees is promoted to improve soil fertility and crop yields. We examined maize grain yields and partial N balances on 24 smallholder maize farms in western Kenya, where interventions have increased access to agricultural inputs and rotational legume technologies. On these farms, mineral fertilizer inputs ranged from 0 to 161 kg N ha-1 (mean = 48 kg N ha-1), and maize grain yields ranged from 1-7 tons ha-1 (mean = 3.4 t ha-1). Partial N balances ranged from large losses (-112 kg N ha-1) to large gains (93 kg N ha-1)with a mean of -3 kg N ha-1. Maize grain yields increased significantly with N inputs (from fertilizer and legumes) in 2012 but not in 2013 when rainfall was lower. Nitrogen inputs of 40 kg N ha-1 were required to produce 3 tons of maize ha-1. N balances varied both among farms and between years, highlighting the importance of tracking inputs and outputs on multiple farms over multiple years before drawing conclusions about nutrient management, soil fertility outcomes and food security. The addition of N from legume rotations was a strong predictor of grain yields and positive N balances in lower-yielding farms in both years. This suggested that legume rotations may be particularly important for buffering yields from climate variability and maintaining N balances in low rainfall years.This research was funded by an Earth Institute at Columbia University Cross-Cutting Initiative Grant, a National Science Foundation PIRE grant (IIA-0968211), and by the Bill and Melinda Gates Foundation (Gates Special Initiative Grant)

Promoting Soil Health In Organically Managed Systems

"Little information is given to farmers on specific combinations of organic amendments, crop types, sequences, rotation duration, or weed management strategies that lead to improved soil health. Although there are numerous studies that compare organic systems to conventional systems, there exist few studies that compare organic systems to each other for determining how to improve soil health metrics. In this review, we focused on 11 indicators of soil health. Overall, the published research focused on four key practices: (1) cover crops; (2) rotation diversity and length; (3) tillage; and (4) organic amendments. We found that including a semi-perennial crop, like alfalfa, consistently improved soil carbon (C), nitrogen (N), and aggregate stability. There is a great deal of variety and nuance to organic systems and more research should focus on how to optimize practices to improve and maintain soil health.

Fertilizer Type and Species Composition Affect Leachate Nutrient Concentrations in Coffee Agroecosystems

Intensification of coffee (Coffea arabica) production is associated with increases in inorganic fertilizer application and decreases in species diversity. Both the use of organic fertilizers and the incorporation of trees on farms can, in theory, reduce nutrient loss in comparison with intensified practices. To test this, we measured nutrient concentrations in leachate at 15 and 100 cm depths on working farms. We examined (1) organically managed coffee agroforests (38 kg N ha−1 year−1; n = 4), (2) conventionally managed coffee agroforests (96 kg N ha−1 year−1; n = 4), and (3) one conventionally managed monoculture coffee farm in Costa Rica (300 kg N ha−1 year−1). Concentrations of nitrate (NO3 −-N) and phosphate (PO4 3−-P) were higher in the monoculture compared to agroforests at both depths. Nitrate concentrations were higher in conventional than organic agroforests at 15 cm only. Soil solutions collected under nitrogen (N)-fixing Erythrina poeppigiana had elevated NO3 −-N concentrations at 15 cm compared to Musa acuminata (banana) or Coffea. Total soil N and carbon (C) were also higher under Erythrina. This research shows that both fertilizer type and species affect concentrations of N and P in leachate in coffee agroecosystems

Organically Managed Coffee Agroforests Have Larger Soil Phosphorus but Smaller Soil Nitrogen Pools than Conventionally Managed Agroforests

The cultivation of crops in the presence of trees (agroforestry) and organic agriculture are management strategies thought to reduce nutrient losses to the environment and increase soil organic matter. Little is known, however, about the differences between organic and conventionally managed agroforests. This research examines how soil nutrient pools and mechanisms for nutrient retention may vary between these two different types of coffee agroforests. We determined variation in soil nutrient pools and nutrient retention capacity among (1) coffee farms in Costa Rica receiving mineral (conventional management) and organic inputs (organic management) and (2) different combinations of shade tree species. Soil nutrient pools and retention capacity were altered by fertilizer management. Soil nitrogen (N) and carbon (C) pools were significantly larger in conventional agroforests, but C:N ratios were similar among agroforests. Soil phosphorus (P) pools were significantly higher in organic agroforests. Overall, C and N concentrations were strongly positively correlated with oxalate-extractable aluminum concentrations. We did not observe many strong species effects; however, soil cation exchange capacity was higher under Coffea–Musa combinations than under Coffea and N-fixing Erythrina combinations. Thus, mechanisms are in place to promote nutrient retention in agroforestry systems, but these mechanisms can be altered by management practices with consequences for long-term nutrient storage

Modeling vapor transfer in soil water and heat simulations: A modularized, partially-coupled approach

Coupled water and heat transfer models are widely used to analyze soil water content and temperature dynamics, evaluate agricultural management systems, and support crop growth modelling. In relatively dry soils, vapor transfer, rather than liquid water flux, becomes the main pathway for water redistribution. However, in some modularized soil simulators, e.g., 2DSOIL (Timlin et al., 1996), vapor transfer is not included, which may induce errors in soil water and heat modelling. Directly embedding vapor transfer into existing water and heat transfer modules may violate the modularized architecture of those simulators. Therefore, the objectives of this study are to design a vapor transfer model, evaluate its performance, and implement it as a separate module in a coupled soil water and heat simulator, e.g., 2DSOIL. The efficacy of the vapor transfer model is evaluated by comparing the simulated soil water content and temperature before and after including the new vapor transfer model, and the soil water content and temperature simulated with the standard Philip and de Vries (1957) model. By implementing vapor transfer as a separate module in 2DSOIL, modifications to existing water and heat transfer modules can be minimized and the modularized model architecture can be maintained. Numerical examples of 2DSOIL with the new vapor transfer model are presented to illustrate the effects of vapor flux on soil water and temperature redistributions. In conclusion, the new vapor transfer model provides an effective and easy-to-use method to account for the effects of vapor transfer on coupled soil water and heat simulations

The Globular Cluster Population of NGC 7457: Clues to the Evolution of Field S0 Galaxies

In this paper we present the results of a wide-field imaging study of the globular cluster (GC) system of the field S0 galaxy NGC 7457. To derive the global properties of the GC system, we obtained deep BVR images with the WIYN 3.5 m telescope and Minimosaic Imager and studied the GC population of NGC 7457 to a projected radius of approximately 30 kpc. Our ground-based data were combined with archival and published Hubble Space Telescope data to probe the properties of the GC system close to the galaxy center and reduce contamination in the GC candidate sample from foreground stars and background galaxies. We performed surface photometry of NGC 7457 and compared the galaxy's surface brightness profile with the surface density profile of the GC system. The profiles have similar shapes in the inner 1 arcminute (3.9 kpc), but the GC system profile appears to flatten relative to the galaxy light at larger radii. The GC system of NGC 7457 is noticeably elliptical in our images; we measure an ellipticity of 0.66 +/- 0.14 for the GC distribution, which is consistent with our measured ellipticity of the galaxy light. We integrated the radial surface density profile of the GC system to derive a total number of GCs N_GC = 210 +/- 30. The GC specific frequency normalized by the galaxy luminosity and mass are S_N = 3.1 +/- 0.7 and T = 4.8 +/- 1.1, respectively. Comparing the derived GC system properties and other empirical data for NGC 7457 to S0 formation scenarios suggests that this field S0 galaxy may have formed in an unequal-mass merger.Comment: 40 pages, 10 figures, accepted for publication in The Astrophysical Journa

Inferring the multiplicity of founder variants initiating HIV-1 infection:a systematic review and individual patient data meta-analysis

BACKGROUND: HIV-1 infections initiated by multiple founder variants are characterised by a higher viral load and a worse clinical prognosis than those initiated with single founder variants, yet little is known about the routes of exposure through which transmission of multiple founder variants is most probable. Here we used individual patient data to calculate the probability of multiple founders stratified by route of HIV exposure and study methodology. METHODS: We conducted a systematic review and meta-analysis of studies that estimated founder variant multiplicity in HIV-1 infection, searching MEDLINE, Embase, and Global Health databases for papers published between Jan 1, 1990, and Sept 14, 2020. Eligible studies must have reported original estimates of founder variant multiplicity in people with acute or early HIV-1 infections, have clearly detailed the methods used, and reported the route of exposure. Studies were excluded if they reported data concerning people living with HIV-1 who had known or suspected superinfection, who were documented as having received pre-exposure prophylaxis, or if the transmitting partner was known to be receiving antiretroviral treatment. Individual patient data were collated from all studies, with authors contacted if these data were not publicly available. We applied logistic meta-regression to these data to estimate the probability that an HIV infection is initiated by multiple founder variants. We calculated a pooled estimate using a random effects model, subsequently stratifying this estimate across exposure routes in a univariable analysis. We then extended our model to adjust for different study methods in a multivariable analysis, recalculating estimates across the exposure routes. This study is registered with PROSPERO, CRD42020202672. FINDINGS: We included 70 publications in our analysis, comprising 1657 individual patients. Our pooled estimate of the probability that an infection is initiated by multiple founder variants was 0·25 (95% CI 0·21-0·29), with moderate heterogeneity (Q=132·3, p<0·0001, I2=64·2%). Our multivariable analysis uncovered differences in the probability of multiple variant infection by exposure route. Relative to a baseline of male-to-female transmission, the predicted probability for female-to-male multiple variant transmission was significantly lower at 0·13 (95% CI 0·08-0·20), and the probabilities were significantly higher for transmissions in people who inject drugs (0·37 [0·24-0·53]) and men who have sex with men (0·30 [0·33-0·40]). There was no significant difference in the probability of multiple variant transmission between male-to-female transmission (0·21 [0·14-0·31]), post-partum transmission (0·18 [0·03-0·57]), pre-partum transmission (0·17 [0·08-0·33]), and intra-partum transmission (0·27 [0·14-0·45]). INTERPRETATION: We identified that transmissions in people who inject drugs and men who have sex with men are significantly more likely to result in an infection initiated by multiple founder variants, and female-to-male infections are significantly less probable. Quantifying how the routes of HIV infection affect the transmission of multiple variants allows us to better understand how the evolution and epidemiology of HIV-1 determine clinical outcomes. FUNDING: Medical Research Council Precision Medicine Doctoral Training Programme and a European Research Council Starting Grant