113 research outputs found
Mass Hierarchy, Mixing, CP-Violation and Higgs Decay---or Why Rotation is Good for Us
The idea of a rank-one rotating mass matrix (R2M2) is reviewed detailing how
it leads to ready explanations both for the fermion mass hierarchy and for the
distinctive mixing patterns between up and down fermion states, which can be
and have been tested against experiment and shown to be fully consistent with
existing data. Further, R2M2 is seen to offer, as by-products: (i) a new
solution of the strong CP problem in QCD by linking the theta-angle there to
the Kobayashi-Maskawa CP-violating phase in the CKM matrix, and (ii) some novel
predictions of possible anomalies in Higgs decay observable in principle at the
LHC. A special effort is made to answer some questions raised.Comment: 47 pages, 9 figure
Target fluorescence in-situ hybridization (Target FISH) for plasma cell enrichment in myeloma
A Comprehensive Mechanism Reproducing the Mass and Mixing Parameters of Quarks and Leptons
It is shown that if, from the starting point of a universal rank-one mass
matrix long favoured by phenomenologists, one adds the assumption that it
rotates (changes its orientation in generation space) with changing scale, one
can reproduce, in terms of only 6 real parameters, all the 16 mass ratios and
mixing parameters of quarks and leptons. Of these 16 quantities so reproduced,
10 for which data exist for direct comparison (i.e. the CKM elements including
the CP-violating phase, the angles in
-oscillation, and the masses ) agree well with
experiment, mostly to within experimental errors; 4 others (), the experimental values for which can only be inferred, agree
reasonably well; while 2 others ( for leptons), not yet
measured experimentally, remain as predictions. In addition, one gets as
bonuses, estimates for (i) the right-handed neutrino mass and (ii)
the strong CP angle inherent in QCD. One notes in particular that the
output value for from the fit agrees very well with
recent experiments. By inputting the current experimental value with its error,
one obtains further from the fit 2 new testable constraints: (i) that
must depart from its "maximal" value: , (ii) that the CP-violating (Dirac) phase in the PMNS would be
smaller than in the CKM matrix: of order only if
not vanishing altogether.Comment: 37 pages, 1 figur
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Rapid detection of BRCA1/2 recurrent mutations in Chinese breast and ovarian cancer patients with multiplex SNaPshot genotyping panels.
BRCA1/2 mutations are significant risk factors for hereditary breast and ovarian cancer (HBOC), its mutation frequency in HBOC of Chinese ethnicity is around 9%, in which nearly half are recurrent mutations. In Hong Kong and China, genetic testing and counseling are not as common as in the West. To reduce the barrier of testing, a multiplex SNaPshot genotyping panel that targeted 25 Chinese BRCA1/2 mutation hotspots was developed, and its feasibility was evaluated in a local cohort of 441 breast and 155 ovarian cancer patients. For those who tested negative, they were then subjected to full-gene testing with next-generation sequencing (NGS). BRCA mutation prevalence in this cohort was 8.05% and the yield of the recurrent panel was 3.52%, identifying over 40% of the mutation carriers. Moreover, from 79 Chinese breast cancer cases recruited overseas, 2 recurrent mutations and one novel BRCA2 mutation were detected by the panel and NGS respectively. The developed genotyping panel showed to be an easy-to-perform and more affordable testing tool that can provide important contributions to improve the healthcare of Chinese women with cancer as well as family members that harbor high risk mutations for HBOC
Developing the Framed Standard Model
The framed standard model (FSM) suggested earlier, which incorporates the
Higgs field and 3 fermion generations as part of the framed gauge theory
structure, is here developed further to show that it gives both quarks and
leptons hierarchical masses and mixing matrices akin to what is experimentally
observed. Among its many distinguishing features which lead to the above
results are (i) the vacuum is degenerate under a global symmetry which
plays the role of fermion generations, (ii) the fermion mass matrix is
"universal", rank-one and rotates (changes its orientation in generation space)
with changing scale , (iii) the metric in generation space is
scale-dependent too, and in general non-flat, (iv) the theta-angle term in the
QCD action of topological origin gets transformed into the CP-violating phase
of the CKM matrix for quarks, thus offering at the same time a solution to the
strong CP problem.Comment: 53 Page
A Nonabelian Yang-Mills Analogue of Classical Electromagnetic Duality
The classic question of a nonabelian Yang-Mills analogue to electromagnetic
duality is here examined in a minimalist fashion at the strictly 4-dimensional,
classical field and point charge level. A generalisation of the abelian Hodge
star duality is found which, though not yet known to give dual symmetry,
reproduces analogues to many dual properties of the abelian theory. For
example, there is a dual potential, but it is a 2-indexed tensor
of the Freedman-Townsend type. Though not itself functioning as such,
gives rise to a dual parallel transport, , for the
phase of the wave function of the colour magnetic charge, this last being a
monopole of the Yang-Mills field but a source of the dual field. The standard
colour (electric) charge itself is found to be a monopole of .
At the same time, the gauge symmetry is found doubled from say to
. A novel feature is that all equations of motion,
including the standard Yang-Mills and Wong equations, are here derived from a
`universal' principle, namely the Wu-Yang (1976) criterion for monopoles, where
interactions arise purely as a consequence of the topological definition of the
monopole charge. The technique used is the loop space formulation of Polyakov
(1980).Comment: We regret that, due to a technical hitch, parts of the reference list
were mixed up. This is the corrected version. We apologize to the authors
whose papers were misquote
Mutations of PIK3CA in gastric adenocarcinoma
BACKGROUND: Activation of the phosphatidylinositol 3-kinase (PI3K) through mutational inactivation of PTEN tumour suppressor gene is common in diverse cancer types, but rarely reported in gastric cancer. Recently, mutations in PIK3CA, which encodes the p110α catalytic subunit of PI3K, have been identified in various human cancers, including 3 of 12 gastric cancers. Eighty percent of these reported mutations clustered within 2 regions involving the helical and kinase domains. In vitro study on one of the "hot-spot" mutants has demonstrated it as an activating mutation. METHODS: Based on these data, we initiated PIK3CA mutation screening in 94 human gastric cancers by direct sequencing of the gene regions in which 80% of all the known PIK3CA mutations were found. We also examined PIK3CA expression level by extracting data from the previous large-scale gene expression profiling study. Using Significance Analysis of Microarrays (SAM), we further searched for genes that show correlating expression with PIK3CA. RESULTS: We have identified PIK3CA mutations in 4 cases (4.3%), all involving the previously reported hotspots. Among these 4 cases, 3 tumours demonstrated microsatellite instability and 2 tumours harboured concurrent KRAS mutation. Data extracted from microarray studies showed an increased expression of PIK3CA in gastric cancers when compared with the non-neoplastic gastric mucosae (p < 0.001). SAM further identified 2910 genes whose expression levels were positively associated with that of PIK3CA. CONCLUSION: Our data suggested that activation of the PI3K signalling pathway in gastric cancer may be achieved through up-regulation or mutation of PIK3CA, in which the latter may be a consequence of mismatch repair deficiency
Aggregation tests identify new gene associations with breast cancer in populations with diverse ancestry
Background
Low-frequency variants play an important role in breast cancer (BC) susceptibility. Gene-based methods can increase power by combining multiple variants in the same gene and help identify target genes.
Methods
We evaluated the potential of gene-based aggregation in the Breast Cancer Association Consortium cohorts including 83,471 cases and 59,199 controls. Low-frequency variants were aggregated for individual genes’ coding and regulatory regions. Association results in European ancestry samples were compared to single-marker association results in the same cohort. Gene-based associations were also combined in meta-analysis across individuals with European, Asian, African, and Latin American and Hispanic ancestry.
Results
In European ancestry samples, 14 genes were significantly associated (q
Conclusions
Using extended gene-based aggregation tests including coding and regulatory variation, we report identification of plausible target genes for previously identified single-marker associations with BC as well as the discovery of novel genes implicated in BC development. Including multi ancestral cohorts in this study enabled the identification of otherwise missed disease associations as ESR1 (P = 1.31 × 10−5), demonstrating the importance of diversifying study cohorts
Characterizing Emerging Canine H3 Influenza Viruses.
The continual emergence of novel influenza A strains from non-human hosts requires constant vigilance and the need for ongoing research to identify strains that may pose a human public health risk. Since 1999, canine H3 influenza A viruses (CIVs) have caused many thousands or millions of respiratory infections in dogs in the United States. While no human infections with CIVs have been reported to date, these viruses could pose a zoonotic risk. In these studies, the National Institutes of Allergy and Infectious Diseases (NIAID) Centers of Excellence for Influenza Research and Surveillance (CEIRS) network collaboratively demonstrated that CIVs replicated in some primary human cells and transmitted effectively in mammalian models. While people born after 1970 had little or no pre-existing humoral immunity against CIVs, the viruses were sensitive to existing antivirals and we identified a panel of H3 cross-reactive human monoclonal antibodies (hmAbs) that could have prophylactic and/or therapeutic value. Our data predict these CIVs posed a low risk to humans. Importantly, we showed that the CEIRS network could work together to provide basic research information important for characterizing emerging influenza viruses, although there were valuable lessons learned
DNA methylation at an enhancer of the three prime repair exonuclease 2 gene (TREX2) is linked to gene expression and survival in laryngeal cancer
Background: Genetic aberrations in DNA repair genes are linked to cancer, but less is reported about epigenetic regulation of DNA repair and functional consequences. We investigated the intragenic methylation loss at the three prime repair exonuclease 2 (TREX2) locus in laryngeal (n = 256) and colorectal cancer cases (n = 95) and in pan-cancer data from The Cancer Genome Atlas (TCGA).
Results: Significant methylation loss at an intragenic site of TREX2 was a frequent trait in both patient cohorts (p = 0.016 and < 0.001, respectively) and in 15 out of 22 TCGA studies. Methylation loss correlated with immunohistochemically staining for TREX2 (p < 0.0001) in laryngeal tumors and improved overall survival of laryngeal cancer patients (p = 0.045). Chromatin immunoprecipitation, demethylation experiments, and reporter gene assays revealed that the region of methylation loss can function as a CCAAT/enhancer binding protein alpha (CEBPA)-responsive enhancer element regulating TREX2 expression.
Conclusions: The data highlight a regulatory role of TREX2 DNA methylation for gene expression which might affect incidence and survival of laryngeal cancer. Altered TREX2 protein levels in tumors may affect drug-induced DNA damage repair and provide new tailored therapies
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