First record of Hericium flagellum (Basidiomycota) from the “Olbina” nature reserve in Wielkopolska Voivodship, Poland

Hericium flagellum (Scop.) Pers. is considered a rare, wood-decaying fungus that occurs on coniferous trees, predominantly on silver fir (Abies alba). In this paper, a new locality of H. flagellum in Wielkopolska Voivodship is presented, along with the macro- and micromorphological features of the collected specimens. Basidiomata of H. flagellum were found in November 2016 and 2017 in the “Olbina” nature reserve (ATPOL Dc-97, Kalisz Forest District), located in a continental mixed coniferous forest close to the northern border of the natural range of silver fir. In 2016, H. flagellum was found growing in the hollow of an old stump of silver fir, and in the following year, this fungus was recorded on a fallen log of silver fir. The implications for conservation are briefly presented. Prospects of further development of the basidiomata of H. flagellum in the “Olbina” reserve are also discussed

New locality of Hymenochaete cruenta in the Olbina nature reserve and revisiting of distribution of this fungus in Poland

Hymenochaete cruenta is a saprotrophic fungus, grown mainly on the bark of dead branches and trunks of Abies trees and thus the distribution of this fungus in Poland and other European countries is closely connected with natural range of silver fir. Despite its wide range, H. cruenta is considered as rare in the whole area of its occurrence. In this paper, we present a new locality of H. cruenta, discovered in May and September 2016 in the Olbina nature reserve (southern Wielkopolska Lowland, Kalisz Forest District). Ecological notes and macro- and microscopic feature of basidiocarps of this fungus are presented. Additionally, the current distribution of H. cruenta in Poland comprising 78 localities is provided. The rank of H. cruenta among threatened species categories in different European countries is discussed. It seems that the species is rare and threatened in Poland, and it should be still classified as “vulnerable” on the red list of macrofungi. The significance of H. cruenta for diversity of mycobiota and the necessity of further research on the dynamic of occurrence of H. cruenta inside and outside of the natural range of A. alba is underlined

Physiological activity of ectomycorrhizas in a moderately polluted forest (Ratanica catchment, southern Poland)

Ectomycorrhizas of Scots pine (Pinus sylvestris L.) and beech (Fagus sylvatica L.) were sampled in a mature forest ecosystem exposed for more than 40 years to moderate levels of gaseous and dust pollutants. Soil of the forest site was characterised by low pH and accumulation of heavy metals (Pb, Mn, Zn, Cu, Cd, Fe). Mycorrhizal vitality and enzyme activity of the root-surface and soil acid phosphatase (AcPase) were studied at 17 measurement points (0-5 cm soil depth) in relation to the content of inorganic phosphate (Pi) and aluminiumions( Al3+)inthesoil.AnatomyofScotspineandbeechmycorrhizastakenfromdifferentmeasurement points was observed. The concentration ofessential nutrients (C, N, P, Ca, Mg) and the ratios Ca/Al, Mg/AlandN/Pwereanalysedinfineroots.HighconcentrationsofAl3+inthesoil(40-118meqkg-1)andlow levels ofPi (12-44 mg P2O5kg-1) were accompanied by high activity ofthe root-surface AcPase ofpine and beech mycorrhizas (25-67 and 33-86 /./.mol pNP g-1 fresh weight h-1, respectively) and soil AcPase (6.8-22.4 //mol pNP g-1 dry weight h-1). The results indicate that fine tree roots are undoubtedly under stress as evidenced by a disturbance in P uptake and accumulation. However, the high vitality of mycorrhizas and the high Ca/Al ratio in fine roots suggest that the defence mechanisms of mycorrhizas and the rhizosphere are still able to ameliorate the influence of anthropogenic pollution

Detection of atrial fibrillation episodes in long-term heart rhythm signals using a support vector machine

Atrial fibrillation (AF) is a serious heart arrhythmia leading to a significant increase of the risk for occurrence of ischemic stroke. Clinically, the AF episode is recognized in an electrocardiogram. However, detection of asymptomatic AF, which requires a long-term monitoring, is more efficient when based on irregularity of beat-to-beat intervals estimated by the heart rate (HR) features. Automated classification of heartbeats into AF and non-AF by means of the Lagrangian Support Vector Machine has been proposed. The classifier input vector consisted of sixteen features, including four coefficients very sensitive to beat-to-beat heart changes, taken from the fetal heart rate analysis in perinatal medicine. Effectiveness of the proposed classifier has been verified on the MIT-BIH Atrial Fibrillation Database. Designing of the LSVM classifier using very large number of feature vectors requires extreme computational efforts. Therefore, an original approach has been proposed to determine a training set of the smallest possible size that still would guarantee a high quality of AF detection. It enables to obtain satisfactory results using only 1.39% of all heartbeats as the training data. Post-processing stage based on aggregation of classified heartbeats into AF episodes has been applied to provide more reliable information on patient risk. Results obtained during the testing phase showed the sensitivity of 98.94%, positive predictive value of 98.39%, and classification accuracy of 98.86%.Web of Science203art. no. 76

Ectomycorrhizal fungal communities on seedlings and conspecific trees of Pinus mugo grown on the coastal dunes of the Curonian Spit in Lithuania

Ectomycorrhizal (ECM) communities of mature trees and regenerating seedlings of a non-native tree species Pinus mugo grown in a harsh environment of the coastal region of the Curonian Spit National Park in Lithuania were assessed. We established three study sites (S1, S2, and S3) that were separated from each other by 15 km. The ECM species richness was rather low in particular for mature, 100-year-old trees: 12 ectomycorrhizal taxa were identified by molecular analysis from 11 distinguished morphotypes. All 12 taxa were present on seedlings and on mature trees, with between 8–11 and 9–11 taxa present on seedlings and mature trees, respectively. Cenococcum geophilum dominated all ECM communities, but the relative abundance of C. geophilum mycorrhizas was nearly two times higher on seedlings than on mature trees. Mycorrhizal associations formed by Wilcoxina sp., Lactarius rufus, and Russula paludosa were also abundant. Several fungal taxa were only occasionally detected, including Cortinarius sp., Cortinarius obtusus, Cortinarius croceus, and Meliniomyces sp. Shannon’s diversity indices for the ECM assemblages of P. mugo ranged from 0.98 to 1.09 for seedling and from 1.05 to 1.31 for mature trees. According to analysis of similarity, the mycorrhizal communities were similar between the sites (R = 0.085; P = 0.06) and only slightly separated between seedlings and mature trees (R = 0.24; P < 0.0001). An incidental fruiting body survey that was conducted weakly reflected the below-ground assessment of the ECM fungal community and once again showed that ECM and fruiting body studies commonly supply different partial accounts of the true ECM fungal diversity. Our results show that P. mugo has moved into quite distinct habitats and is able to adapt a suite of ECM symbionts that sufficiently support growth and development of this tree and allow for natural seedling regeneration

Biomass of external mycelium of ectomycorrhizal fungi in Norway spruce stands in Poland

Biomass of extramatrical mycorrhizal mycelium (EMM) was examined under canopies of mature Norway spruce trees grown in different forest stands in Poland. Two mountain forest sites (Brenna and Salmopol), one upland site (Zwierzyniec) and one lowland site (Mirachowo) have been investigated, using sand-filled mesh-bags method. The in-grow mesh-bags were buried in the soil for 12 months (since October up to the next October) or for 4 months (since June up to October) at four depths at each site: 5, 15, 30 and 45 cm (Brenna and Salmopol) or 60 cm (Zwierzyniec and Mirachowo). The mycelium biomass was estimated from the ergosterol content determined in the mesh-bags. The results indicated significant differences in EMM production and their vertical distribution between the mountain and the upland and lowland forest sites. The lowest EMM biomass was found at the experimental plot in the mountainious site Brenna. Considerable decrease of EMM biomass with the soil depth was recorded after 12 months of the mesh-bags incubation in soil in the upland and lowland sites, while in the mountain forests decrease of the EMM biomass in the lower soil depths diminished more gradually EMM biomass determined in the mesh-bags placed in soil at the upper 5 and 15 cm tended to be higher after 4 months than after 12 months of incubation period. Such results suggest that the time necessary for evaluation of EMM biomass in soil may be limited to the summer–autumn months, when the production of EMM is the highest. Variable stress factors can influence decreased ectomycorrhizal mycelium production and/or their destruction. Further research in different forest types and regions are needed for better understanding factors determining EMM biomass production and surviving in soil

Presumptive self-diagnosis of malaria and other febrile illnesses in Sierra Leone.

INTRODUCTION The objective of this study was to evaluate the prevalence of self-diagnosis of malaria and other febrile illnesses in Bo, Sierra Leone. METHODS All households in two neighboring sections of Bo were invited to participate in a cross-sectional survey. RESULTS A total of 882 households (an 85% participation rate) that were home to 5410 individuals participated in the study. Of the 910 individuals reported to have had what the household considered to be malaria in the past month, only 41% were diagnosed by a healthcare professional or a laboratory test. Of the 1402 individuals reported to have had any type of febrile illness within the past six months, only 34% had sought a clinical or laboratory diagnosis. Self-diagnosis of influenza, yellow fever, typhoid, and pneumonia was also common. CONCLUSION Self-diagnosis and presumptive treatment with antimalarial drugs and other antibiotic medications that are readily available without a prescription may compromise health outcomes for febrile adults and children

Testing and Validation of High Density Resequencing Microarray for Broad Range Biothreat Agents Detection

Rapid and effective detection and identification of emerging microbiological threats and potential biowarfare agents is very challenging when using traditional culture-based methods. Contemporary molecular techniques, relying upon reverse transcription and/or polymerase chain reaction (RT-PCR/PCR) provide a rapid and effective alternative, however, such assays are generally designed and optimized to detect only a limited number of targets, and seldom are capable of differentiation among variants of detected targets. To meet these challenges, we have designed a broad-range resequencing pathogen microarray (RPM) for detection of tropical and emerging infectious agents (TEI) including biothreat agents: RPM-TEI v 1.0 (RPM-TEI). The scope of the RPM-TEI assay enables detection and differential identification of 84 types of pathogens and 13 toxin genes, including most of the class A, B and C select agents as defined by the Centers for Disease Control and Prevention (CDC, Atlanta, GA). Due to the high risks associated with handling these particular target pathogens, the sensitivity validation of the RPM-TEI has been performed using an innovative approach, in which synthetic DNA fragments are used as templates for testing the assay's limit of detection (LOD). Assay specificity and sensitivity was subsequently confirmed by testing with full-length genomic nucleic acids of selected agents. The LOD for a majority of the agents detected by RPM-TEI was determined to be at least 104 copies per test. Our results also show that the RPM-TEI assay not only detects and identifies agents, but is also able to differentiate near neighbors of the same agent types, such as closely related strains of filoviruses of the Ebola Zaire group, or the Machupo and Lassa arenaviruses. Furthermore, each RPM-TEI assay results in specimen-specific agent gene sequence information that can be used to assess pathogenicity, mutations, and virulence markers, results that are not generally available from multiplexed RT-PCR/PCR-based detection assays