A site selection methodology for CO2 underground storage in deep saline aquifers: case of the Paris Basin

International audienceSite selection is a fundamental step, which can condition the success of a CO2 geological storage. A CO2 storage has to gather several targets, which can be expressed through a list of criteria. In the proposed site selection methodology, these criteria can be classified into “killer criteria” and “site-qualification criteria”, whose combinations allow identifying potential sites and the most appropriate one(s). This multicriteria methodology is applied on the PICOREF study area, located in the Paris Basin, on which potential site(s) in deep saline aquifers are investigated

New evidence of a mitochondrial genetic background paradox: Impact of the J haplogroup on the A3243G mutation

International audienceBackground: The A3243G mutation in the tRNALeu gene (UUR), is one of the most common pathogenic mitochondrial DNA (mtDNA) mutations in France, and is associated with highly variable and heterogeneous disease phenotypes. To define the relationships between the A3243G mutation and mtDNA backgrounds, we determined the haplogroup affiliation of 142 unrelated French patients – diagnosed as carriers of the A3243G mutation – by control-region sequencing and RFLP survey of their mtDNAs. Results: The analysis revealed 111 different haplotypes encompassing all European haplogroups, indicating that the 3243 site might be a mutational hot spot. However, contrary to previous findings, we observed a statistically significant underepresentation of the A3243G mutation on haplogroup J in patients (p = 0.01, OR = 0.26, C.I. 95%: 0.08–0.83), suggesting that might be due to a strong negative selection at the embryo or germ line stages. Conclusion: Thus, our study supports the existence of mutational hotspot on mtDNA and a "haplogroup J paradox," a haplogroup that may increase the expression of mtDNA pathogenic mutations, but also be beneficial in certain environmental contexts

OPA1-related dominant optic atrophy is not strongly influenced by mitochondrial DNA background

<p>Abstract</p> <p>Background</p> <p>Leber's hereditary optic neuropathy (LHON) and autosomal dominant optic atrophy (ADOA) are the most frequent forms of hereditary optic neuropathies. LHON is associated with mitochondrial DNA (mtDNA) mutations whereas ADOA is mainly due to mutations in the OPA1 gene that encodes a mitochondrial protein involved in the mitochondrial inner membrane remodeling. A striking influence of mtDNA haplogroup J on LHON expression has been demonstrated and it has been recently suggested that this haplogroup could also influence ADOA expression. In this study, we have tested the influence of mtDNA backgrounds on OPA1 mutations.</p> <p>Methods</p> <p>To define the relationships between OPA1 mutations and mtDNA backgrounds, we determined the haplogroup affiliation of 41 French patients affected by OPA1-related ADOA by control-region sequencing and RFLP survey of their mtDNAs.</p> <p>Results</p> <p>The comparison between patient and reference populations did not revealed any significant difference.</p> <p>Conclusion</p> <p>Our results argue against a strong influence of mtDNA background on ADOA expression. These data allow to conclude that OPA1 could be considered as a "severe mutation", directly responsible of the optic atrophy, whereas OPA1-negative ADOA and LHON mutations need an external factor(s) to express the pathology (i.e. synergistic interaction with mitochondrial background).</p

Mutation Rate Switch inside Eurasian Mitochondrial Haplogroups: Impact of Selection and Consequences for Dating Settlement in Europe

R-lineage mitochondrial DNA represents over 90% of the European population and is significantly present all around the planet (North Africa, Asia, Oceania, and America). This lineage played a major role in migration “out of Africa” and colonization in Europe. In order to determine an accurate dating of the R lineage and its sublineages, we analyzed 1173 individuals and complete mtDNA sequences from Mitomap. This analysis revealed a new coalescence age for R at 54.500 years, as well as several limitations of standard dating methods, likely to lead to false interpretations. These findings highlight the association of a striking under-accumulation of synonymous mutations, an over-accumulation of non-synonymous mutations, and the phenotypic effect on haplogroup J. Consequently, haplogroup J is apparently not a Neolithic group but an older haplogroup (Paleolithic) that was subjected to an underestimated selective force. These findings also indicated an under-accumulation of synonymous and non-synonymous mutations localized on coding and non-coding (HVS1) sequences for haplogroup R0, which contains the major haplogroups H and V. These new dates are likely to impact the present colonization model for Europe and confirm the late glacial resettlement scenario

Implication de la RhoGAP Rgd1p dans la polarité cellulaire chez les levures Saccharomyces cerevisiæ et Candida albicans

La polarité cellulaire est un phénomène biologique essentiel du monde vivant. Chez la levure Candida albicans, sa capacité à croître sous une forme hyperpolarisée semble être un élément déterminant de sa pathogénicité. Nous avons entrepris d identifier les éléments moléculaires d une structure essentielle à cette croissance hyphale, le Spitzenkörper, afin de mieux comprendre le rôle de ce corps apical dans la croissance polarisée. Nous nous sommes également intéressés à la régulation des protéines Rho3 et Rho4 impliquées dans la croissance polarisée de C. albicans, à travers l identification et l étude de la protéine RhoGAP commune à ces deux protéines Rhos, la protéine Rgd1.Chez la levure Saccharomyces cerevisiæ, les protéines Rho3 et Rho4 sont également impliquées dans le contrôle de la croissance polarisée, et sont régulées par la protéine Rgd1. Le laboratoire, à l origine de la découverte de ce régulateur commun, étudiait des aspects de croissance polarisée contrôlée par les protéines Rho3 et Rho4, à travers l étude de la régulation de la protéine Rgd1. Nous avons notamment mis en évidence que Rgd1p est modifiée au niveau post-traductionnel par des phosphorylations. La kinase Ipl1 de la famille des kinases Aurora est un des acteurs de cette modification. Différents éléments indiquent que le complexe phosphatase Glc7-Bud14 serait également impliqué dans le contrôle de l état de phosphorylation de Rgd1p, de façon antagoniste à la kinase Ipl1Cell polarity is an essential process for living organisms. In the yeast Candida albicans, its ability of hyperpolarized growth seems to be a decisive element for its pathogenicity. We undertook to identify molecular elements of an essential structure for hyphal growth, named Spitzenkörper, to better understand the role of this apical body in polarised growth. We also studied regulation of Rho3 and Rho4 proteins implicated in C. albicans polarised growth, through identification and study of a shared RhoGAP protein, named Rgd1.In the yeast Saccharomyces cerevisiæ, Rho3 and Rho4 proteins are also implicated in polarised growth control, and are regulated by Rgd1 protein. The laboratory, which identified this shared regulator, studied polarised growth aspects controlled by Rho3 and Rho4 proteins, through study of Rgd1p regulation. We showed that Rgd1p is post-translationally modified, by phosphorylations. The Ipl1 kinase, an Aurora family member, is implicated in this modification. Several elements indicate that the Glc7-Bud14 phosphatase complex would be also implicated in the control of Rgd1 phosphorylation state, antagonistically to Ipl1pBORDEAUX2-Bib. électronique (335229905) / SudocSudocFranceF

Through its F-BAR and RhoGAP domains, Rgd1p acts in different polarized growth processes in budding yeast

Protein domain architecture can be used to construct supramolecular structures, to carry out specific functions and to mediate signaling in prokaryotic and eukaryotic cells. The Rgd1p protein of budding yeast contains two domains with different functions in the cell: the F-BAR and RhoGAP domains. The F-BAR domain has been shown to interact with membrane phospholipids and is thought to induce or sense membrane curvature. The RhoGAP domain activates the GTP hydrolysis of two Rho GTPases, thereby regulating different cellular pathways. Specific molecular interactions with the F-BAR and RhoGAP domains, cell signaling and interplay between these domains may allow the Rgd1p protein to act in several different biological processes, all of which are required for polarized growth in yeast

Through its F-BAR and RhoGAP domains, Rgd1p acts in different polarized growth processes in budding yeast

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Doxorubicin Inhibits Phosphatidylserine Decarboxylase and Modifies Mitochondrial Membrane Composition in HeLa Cells

Doxorubicin (DXR) is a drug widely used in chemotherapy. Its mode of action is based on its intercalation properties, involving the inhibition of topoisomerase II. However, few studies have reported the mitochondrial effects of DXR while investigating cardiac toxicity induced by the treatment, mostly in pediatric cases. Here, we demonstrate that DXR alters the mitochondrial membrane composition associated with bioenergetic impairment and cell death in human cancer cells. The remodeling of the mitochondrial membrane was explained by phosphatidylserine decarboxylase (PSD) inhibition by DXR. PSD catalyzes phosphatidylethanolamine (PE) synthesis from phosphatidylserine (PS), and DXR altered the PS/PE ratio in the mitochondrial membrane. Moreover, we observed that DXR localized to the mitochondrial compartment and drug uptake was rapid. Evaluation of other topoisomerase II inhibitors did not show any impact on the mitochondrial membrane composition, indicating that the DXR effect was specific. Therefore, our findings revealed a side molecular target for DXR and PSD, potentially involved in DXR anti-cancer properties and the associated toxicity