Diffusion scale dependent change in anaerobic carbon and nitrogen mineralization: True effector experimental artifact?

Burrowing macrofauna is known to influence the diffusion properties and solute transport within sediments as well as promoting aerobic microbial processes. It has recently been argued that changes in diffusion scales also affect anaerobic microbial processes in sediments. We tested this contention on coastal sandy sediment using a widely employed sediment plug flux-incubation technique. Our results confirm that volume specific microbial carbon and nitrogen mineralization apparently are enhanced (6–15 and 3–9 times, respectively) in thin (1 mm) compared with thick (10 cm) sediment plugs incubated in anoxic seawater. However, differential accumulation of inhibiting substances among plug sizes cannot explain this phenomenon, as the same pattern was observed for plugs incubated in anoxic porewater. Instead, we found that microbial activity in the overlying water and biofilms along the walls of incubation chambers affects the results significantly. A low, but constant production of 3–7 (TCO2) and 0.5 (NH4+) nmol cm−3 d−1 in the water phase and 51–140 (TCO2) and 4–16 (NH4+) nmol cm−2 d−1in biofilms irrespective of plug thickness can explain a large part of the apparent diffusion scale dependent change in volume specific solute production in the sediment. Model considerations show that sediment independent water phase and biofilm reactions occurring in the incubation chambers result in highly overestimated volume specific rates for thin plugs. The overestimate is negligible for plugs thicker than 1 cm because the total reactions occurring within these larger sediment plugs exceed those in the water and biofilms considerably. We therefore conclude that most of the apparent inverse relationship between diffusion scales and anaerobic microbial processes in sandy sediment found by the use of flux-incubation chambers is an experimental artifact rather than a true diffusion scale dependent effect

Effects of temperature and organic pollution on nutrient cycling in marine sediments

Increasing ocean temperature due to climate change is an important anthropogenic driver of ecological change in coastal systems. In these systems sediments play a major role in nutrient cycling. Our ability to predict ecological consequences of climate change is enhanced by simulating real scenarios. Based on predicted climate change scenarios, we tested the effect of temperature and organic pollution on nutrient release from coastal sediments to the water column in a mesocosm experiment. PO43− release rates from sediments followed the same trends as organic matter mineralization rates, increased linearly with temperature and were significantly higher under organic pollution than under nonpolluted conditions. NH4+ release only increased significantly when the temperature rise was above 6 °C, and it was significantly higher in organic polluted compared to nonpolluted sediments. Nutrient release to the water column was only a fraction from the mineralized organic matter, suggesting PO43− retention and NH4+ oxidation in the sediment. Bioturbation and bioirrigation appeared to be key processes responsible for this behavior. Considering that the primary production of most marine basins is N-limited, the excess release of NH4+ at a temperature rise > 6 °C could enhance water column primary productivity, which may lead to the deterioration of the environmental quality. Climate change effects are expected to be accelerated in areas affected by organic pollution.CS was supported by the Ministerio de Educación y Ciencia of Spain

Effect of temperature on biogeochemistry of marine organic-enriched systems: implications in a global warming scenario

Coastal biogeochemical cycles are expected to be affected by global warming. By means of a mesocosm experiment, the effect of increased water temperature on the biogeochemical cycles of coastal sediments affected by organic-matter enrichment was tested, focusing on the carbon, sulfur, and iron cycles. Nereis diversicolor was used as a model species to simulate macrofaunal bioirrigation activity in natural sediments. Although bioirrigation rates of N. diversicolor were not temperature dependent, temperature did have a major effect on the sediment metabolism. Under organic-enrichment conditions, the increase in sediment metabolism was greater than expected and occurred through the enhancement of anaerobic metabolic pathway rates, mainly sulfate reduction. There was a twofold increase in sediment metabolism and the accumulation of reduced sulfur. The increase in the benthic metabolism was maintained by the supply of electron acceptors through bioirrigation and as a result of the availability of iron in the sediment. As long as the sediment buffering capacity toward sulfides is not surpassed, an increase in temperature might promote the recovery of organic-enriched sediments by decreasing the time for mineralization of excess organic matter.M. Holmer was supported by FNU 09-071369, C. Sanz-Lázaro was supported by a predoctoral grant from the Ministerio de Educación y Ciencia of Spain, and T. Valdemarsen was supported by EU-project Thresholds (Contract No. 003933)

Carbon degradation rates, sulfate reduction rates and iron composition in soils flooded with seawater at Gyldensteen Strand, Denmark

Permanent flooding of low-lying coastal areas is a growing threat due to climate change and related sea-level rise. An increasingly common solution to protect coastal areas lying below sea level is intentional flooding by "managed coastal realignment". However, the biogeochemical implications of flooding agricultural soils with seawater are still not well understood. We conducted a 1-year mesocosm experiment to investigate microbial carbon degradation processes in soils flooded with seawater. Agricultural soils were sampled on the northern coast of the island Fyn (Denmark) at Gyldensteen Strand, an area that was subsequently flooded in a coastal realignment project. We found rapid carbon degradation to TCO2 1 day after experimental flooding and onwards and microbial sulfate reduction established quickly as an important mineralization pathway. Nevertheless, no free sulfide was observed as it precipitated as Fe-S compounds with Fe acting as a natural buffer, preventing toxic effects of free sulfide in soils flooded with seawater. Organic carbon degradation decreased significantly after 6 months, indicating that most of the soil organic carbon was refractory towards microbial degradation under the anoxic conditions created in the soil after flooding. During the experiment only 6-7 % of the initial soil organic carbon pools were degraded. On this basis we suggest that most of the organic carbon present in coastal soils exposed to flooding through sea-level rise or managed coastal realignment will be permanently preserved

Responses of an Agricultural Soil Microbiome to Flooding with Seawater after Managed Coastal Realignment

Coastal areas have become more prone to flooding with seawater due to climate-change-induced sea-level rise and intensified storm surges. One way to cope with this issue is by “managed coastal realignment”, where low-lying coastal areas are no longer protected and instead flooded with seawater. How flooding with seawater impacts soil microbiomes and the biogeochemical cycling of elements is poorly understood. To address this, we conducted a microcosm experiment using soil cores collected at the nature restoration project site Gyldensteen Strand (Denmark), which were flooded with seawater and monitored over six months. Throughout the experiment, biogeochemical analyses, microbial community fingerprinting and the quantification of marker genes documented clear shifts in microbiome composition and activity. The flooding with seawater initially resulted in accelerated heterotrophic activity that entailed high ammonium production and net removal of nitrogen from the system, also demonstrated by a concurrent increase in the abundances of marker genes for ammonium oxidation and denitrification. Due to the depletion of labile soil organic matter, microbial activity decreased after approximately four months. The event of flooding caused the largest shifts in microbiome composition with the availability of labile organic matter subsequently being the most important driver for the succession in microbiome composition in soils flooded with seawater

Benthic macrofauna bioturbation and early colonization in newly flooded coastal habitats.

How will coastal soils in areas newly flooded with seawater function as habitat for benthic marine organisms? This research question is highly relevant as global sea level rise and coastal realignment will cause flooding of soils and form new marine habitats. In this study, we tested experimentally the capacity of common marine polychaetes, Marenzelleria viridis, Nereis (Hediste) diversicolor and Scoloplos armiger to colonize and modify the biogeochemistry of the newly established Gyldensteen Coastal Lagoon, Denmark. All tested polychaetes survived relatively well (28-89%) and stimulated carbon dioxide release (TCO2) by 97-105% when transferred to newly flooded soils, suggesting that soil characteristics are modified rapidly by colonizing fauna. A field survey showed that the pioneering benthic community inside the lagoon was structurally different from the marine area outside the lagoon, and M. viridis and S. armiger were not among the early colonizers. These were instead N. diversicolor and Polydora cornuta with an abundance of 1603 and 540 ind m-2, respectively. Considering the species-specific effects of N. diversicolor on TCO2 release and its average abundance in the lagoon, we estimate that organic carbon degradation was increased by 219% in the first year of flooding. We therefore conclude that early colonizing polychaetes modify the soils and may play an important role in the ecological and successional developments, e.g. C cycling and biodiversity, in newly flooded coastal ecosystems. Newly flooded soils have thus a strong potential to develop into well-functioning marine ecosystems