Practical Study for Conservation of Giant Salamander Andrias japonicus in Toyosaka, Higashi-Hiroshima, Japan <Article>

オオサンショウウオAndrias japonicus は,日本の固有種であり国の特別天然記念物である。環境省のレッドリストでは絶滅危惧Ⅱ類(VU)に指定され,全国的に生息状況の悪化が危惧されている。東広島市豊栄町椋梨川においても,河川の人工化等によりその数が減少し,保護活動の担い手の高齢化に伴い,本種の生息状況に関する情報が極めて乏しい状況であった。そこで,本河川での本種の分布・生態を明らかにする野外調査を実施した。その結果,2011 年からの約2年間の調査で成体21個体と幼生10個体を確認し,本河川が本種の生息地であるだけでなく貴重な繁殖地であることを確認した。しかし,幼生を除けば全長60 - 86cm の大型個体しか確認されず,弱齢個体の個体群への新規加入が正常に起こっていない危険性も示唆された。本稿では,本河川における本種の現状が危機的であることを具体的に報告し,本種の保全にむけた持続的な活動の構築を目指した普及活動の成果と課題についても報告する。The giant salamander Andrias japonicas, which is endemic to Japan, is ranked as vulnerable. It is designated as a national special natural monument. Information on the giant salamander in Higashi-Hiroshima city is extremely scarce. To determine the current habitat of A. japonicas, we surveyed the Mukunashi River including areas where the giant salamander had lived in the past. Our surveys did find 21 adults and 10 larvae of A. japonicas within a two year period (from 2011 to 2013). However, we did not discover any young individuals of total length of 50 mm - 600 mm. This suggests that larval recruitment is not successful. This paper specifically reports that a critical situation exists for the giant salamander in the Mukunashi River in Higashi-Hiroshima City. And the publicity work aiming at conservation and its result are also reported

Promotion of Secondary School Science Education Driven by Inquiry-Based Activity

This article reports fundamental researches organized for developing a novel teaching/learning system in secondary school science. A curriculum constructed by an effective integration of content-based and context-based curriculum arrangements is proposed for generating teaching/learning opportunities through various inquiry-based activities on the basis of previously acquired science knowledge and concepts. The science subjects, including physics, chemistry, biology and earth science, have different logics and methodologies of science, but those are completed by mutual interdependences. Therefore, various storylines that cover different leraning contents in science subjects can be developed. The inquiry-based activities along different storylines provide students with opportunities to correlate previous learnings in different science subjects and to experience various cognitive and scientific skills. Based on such findings of our basic researches, the merits of the science education system proposed in this study is discussed briefly.本研究は，科学研究費補助金基盤研究(A)(一般)(25242015)による

Active Learning Models in Science Classes

研究の第１年次に当たる本年は，理科におけるアクティブラーニング型授業の構造化に向けて，内化と外化の往還を取り入れた授業デザインとその実践に取り組み，具体的実践の蓄積を行った。小学校，中学校，高等学校それぞれで実践を行ったところ，１）学習内容の定着が図られる，２）発展的な内容や未習内容を生徒が主体的に理解することが可能である，３）協働的な学びの場面を加えることで理解の深化が図られる，４）どのような課題に取り組ませるのかといった課題の設定がカギである，５）アクティブラーニングであるか否かを判断するための要素を明らかにする必要がある，などの一定の成果と課題が明らかになった。The purpose of this study is to create active learning models in science classes. As the first-year research, the authors designed the classes which would include a round trip between externalization and internalization, and put them into practice. The designed models were adopted in elementary, junior high and senior high school classes. What have become clear are as the following; 1) Students’ acquisition of the learning contents can be promoted, 2) Students can understand advanced contents proactively, 3) Students’ learning can be deepened by adding collaborative activities, 4) The success or failure to active learning may depend on the quality of the tasks which students work on, 5) It is necessary to clarify the factors to determine active learning

The Role of Science Education in the Construction of a Knowledge-Based Society

知識基盤社会における理科の役割は，科学的に探究する活動を通して得られた結果（情報）を活用し，それらの情報から導き出した自らの考えを表現する能力を高めることである。これまでに明らかになったことは，授業者が実験結果に対して関連付けることができる事項を明確にし，分析・解釈する視点を与えることが重要であるということである。今年度は，小学校，中学校，高等学校の理科で，パフォーマンス課題を取り入れた探究活動を行い，多くの授業者が共有できる方向性を考えた。実践の結果，以下のことが明らかになった。１）小集団での話し合いの質を高めるためには，話し合いの目的と方法を明示することが重要であること。２）そのために授業者の関わり方を引き続き検討する必要があること。３）パフォーマンス課題の設計には授業者がよりメタ認知を働かせることが必要であること。今後は，このような実践経験を広く共有すべきであると考えている。Science education should help students to utilize results and information through activities, to investigate scientifically, and to develop their abilities to express ideas they have derived from those results. We have learned that it is important for instructors to clarify which results from experiments relate to each other and to give students some clear perspectives for analyzing and interpreting them. This academic year, we investigated performance tasks at elementary, junior high, and senior high school levels. Through our research we have learned that to improve the quality of discussion in small groups, it is important to make the purpose and method clear. We also showed that instructors should monitor how they engage with students in the course of discussion and that they need to function meta-cognitive abilities more to design performance tasks

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this area is still limited. Several lines of investigation have been used to elucidate the structure and function of the genes in the human genome. Even so, gene prediction remains a difficult task, as the varieties of transcripts of a gene may vary to a great extent. We thus performed an exhaustive integrative characterization of 41,118 full-length cDNAs that capture the gene transcripts as complete functional cassettes, providing an unequivocal report of structural and functional diversity at the gene level. Our international collaboration has validated 21,037 human gene candidates by analysis of high-quality full-length cDNA clones through curation using unified criteria. This led to the identification of 5,155 new gene candidates. It also manifested the most reliable way to control the quality of the cDNA clones. We have developed a human gene database, called the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/). It provides the following: integrative annotation of human genes, description of gene structures, details of novel alternative splicing isoforms, non-protein-coding RNAs, functional domains, subcellular localizations, metabolic pathways, predictions of protein three-dimensional structure, mapping of known single nucleotide polymorphisms (SNPs), identification of polymorphic microsatellite repeats within human genes, and comparative results with mouse full-length cDNAs. The H-InvDB analysis has shown that up to 4% of the human genome sequence (National Center for Biotechnology Information build 34 assembly) may contain misassembled or missing regions. We found that 6.5% of the human gene candidates (1,377 loci) did not have a good protein-coding open reading frame, of which 296 loci are strong candidates for non-protein-coding RNA genes. In addition, among 72,027 uniquely mapped SNPs and insertions/deletions localized within human genes, 13,215 nonsynonymous SNPs, 315 nonsense SNPs, and 452 indels occurred in coding regions. Together with 25 polymorphic microsatellite repeats present in coding regions, they may alter protein structure, causing phenotypic effects or resulting in disease. The H-InvDB platform represents a substantial contribution to resources needed for the exploration of human biology and pathology

The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force

「コロナ制圧タスクフォース」COVID-19患者由来の血液細胞における遺伝子発現の網羅的解析 --重症度に応じた遺伝子発現の変化には、ヒトゲノム配列の個人差が影響する--. 京都大学プレスリリース. 2022-08-23.Coronavirus disease 2019 (COVID-19) is a recently-emerged infectious disease that has caused millions of deaths, where comprehensive understanding of disease mechanisms is still unestablished. In particular, studies of gene expression dynamics and regulation landscape in COVID-19 infected individuals are limited. Here, we report on a thorough analysis of whole blood RNA-seq data from 465 genotyped samples from the Japan COVID-19 Task Force, including 359 severe and 106 non-severe COVID-19 cases. We discover 1169 putative causal expression quantitative trait loci (eQTLs) including 34 possible colocalizations with biobank fine-mapping results of hematopoietic traits in a Japanese population, 1549 putative causal splice QTLs (sQTLs; e.g. two independent sQTLs at TOR1AIP1), as well as biologically interpretable trans-eQTL examples (e.g., REST and STING1), all fine-mapped at single variant resolution. We perform differential gene expression analysis to elucidate 198 genes with increased expression in severe COVID-19 cases and enriched for innate immune-related functions. Finally, we evaluate the limited but non-zero effect of COVID-19 phenotype on eQTL discovery, and highlight the presence of COVID-19 severity-interaction eQTLs (ieQTLs; e.g., CLEC4C and MYBL2). Our study provides a comprehensive catalog of whole blood regulatory variants in Japanese, as well as a reference for transcriptional landscapes in response to COVID-19 infection