The little skate genome and the evolutionary emergence of wing-like fins

Skates are cartilaginous fish whose body plan features enlarged wing-like pectoral fins, enabling them to thrive in benthic environments1,2. However, the molecular underpinnings of this unique trait remain unclear. Here we investigate the origin of this phenotypic innovation by developing the little skate Leucoraja erinacea as a genomically enabled model. Analysis of a high-quality chromosome-scale genome sequence for the little skate shows that it preserves many ancestral jawed vertebrate features compared with other sequenced genomes, including numerous ancient microchromosomes. Combining genome comparisons with extensive regulatory datasets in developing fins—including gene expression, chromatin occupancy and three-dimensional conformation—we find skate-specific genomic rearrangements that alter the three-dimensional regulatory landscape of genes that are involved in the planar cell polarity pathway. Functional inhibition of planar cell polarity signalling resulted in a reduction in anterior fin size, confirming that this pathway is a major contributor to batoid fin morphology. We also identified a fin-specific enhancer that interacts with several hoxa genes, consistent with the redeployment of hox gene expression in anterior pectoral fins, and confirmed its potential to activate transcription in the anterior fin using zebrafish reporter assays. Our findings underscore the central role of genome reorganization and regulatory variation in the evolution of phenotypes, shedding light on the molecular origin of an enigmatic trait

Deployment of mating disruption dispensers before and after first seasonal male flights for the control of Aonidiella aurantii in citrus

The rejection of citrus fruit caused by infestations of the California red scale (CRS), Aonidiella aurantii (Maskell) (Hemiptera: Diaspididae), raises concerns about its management. This fact has led to the introduction of new integrated control methods in citrus orchards, including the implementation of techniques based on pheromones. Previous works described efficient mating disruption pheromone dispensers to control A. aurantii in the Mediterranean region. The main aims of the present study were to adjust the timing of dispenser applications and study the importance of controlling the early first generation of A. aurantii by testing two different application dates: before and after the first CRS male flight. The efficacy of the different mating disruption strategies was tested during 2010 in an experimental orchard and these results were confirmed during 2011 in a commercial citrus farm. Results showed that every mating disruption strategy achieved significantly lower male captures in monitoring pheromone traps compared with untreated plots, as well as mean fruit infestation reductions of about 80 %. The control of the first CRS generation is not essential for achieving a good efficacy as demonstrated in two locations with different pest pressure. The late application of MD dispensers before the second CRS male flight has proven to be effective, suggesting a new advantageous way to apply mating disruption.The authors want to thank Fernando Alfaro from Denia, Antonio Caballero, and Javier Macias from Rio Tinto Fruit S.A. (Huelva, Spain) for field support. We also thank Ecologia y Proteccion Agricola SL for the pheromone supply. This work has been funded by the Spanish Ministry of Science and Innovation (project AGL2009-10725) and Agroalimed Foundation. The translation of this paper was funded by the Universidad Politecnica de Valencia (Spain).Vacas González, S.; Alfaro Cañamás, C.; Primo Millo, J.; Navarro-Llopis, V. (2015). Deployment of mating disruption dispensers before and after first seasonal male flights for the control of Aonidiella aurantii in citrus. Journal of Pest Science. 88(2):321-329. https://doi.org/10.1007/s10340-014-0623-1S321329882Avidov Z, Balshin M, Gerson U (1970) Studies on Aphytis coheni, a parasite of the California red scale, Aonidiella aurantii in Israel. Biocontrol 15:191–207Barzakay I, Hefetz A, Sternlicht M, Peleg BA, Gokkes M, Singer G, Geffen D, Kronenberg S (1986) Further field trials on management of the California red scale, Aonidiella aurantii, by mating disruption with its sex-pheromone. Phytoparasitica 14:160–161Bedford ECG (1996) Problems which we face in bringing red scale, Aonidiella aurantii (Maskell), under biological control in citrus in South Africa. Proc Int Soc Citriculture 1:485–492Campos-Rivela JM, Martínez-Ferrer MT, Fibla-Queralt JM (2012) Population dynamics and seasonal trend of California red scale (Aonidiella aurantii Maskell) in citrus in Northern Spain. Span J Agric Res 10:198–208Collins PJ, Lambkin TM, Bodnaruk P (1994) Suspected resistance to methidation in Aonidiella aurantii (Maskell) (Homoptera: diaspididae) from Queensland. J Aust Entomol Soc 33:325–326Corma A, Muñoz-Pallares J, Primo-Yufera E (1999) Production of semiochemical emitters having a controlled emission speed which are based on inorganic molecular sieves. World Patent WO9944420Corma A, Muñoz-Pallares J, Primo-Yufera E (2000) Emitter of semiochemical substances supported on a sepiolite, preparation process and applications. World Patent WO0002448DeBach P (1959) New species and strains of Aphytis (Hymenoptera: Eulophidae) parasitic on the California red scale, Aonidiella aurantii (Mask.), in the Orient. 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Xenopus as a Model System for the Study of GOLPH2/GP73 Function: Xenopus golph2 Is Required for Pronephros Development

GOLPH2 is a highly conserved protein. It is upregulated in a number of tumors and is being considered as an emerging biomarker for related diseases. However, the function of GOLPH2 remains unknown. The Xenopus model is used to study the function of human proteins. We describe the isolation and characterization of Xenopus golph2, which dimerizes and localizes to the Golgi in a manner similar to human GOLPH2. Xenopus golph2 is expressed in the pronephros during early development. The morpholino-mediated knockdown of golph2 results in edema formation. Additionally, Nephrin expression is enhanced in the glomus, and the expression of pronephric marker genes, such as atp1b1, ClC-K, NKCC2, and NBC1, is diminished in the tubules and duct. Expression patterns of the transcription factors WT1, Pax2, Pax8, Lim1, GATA3, and HNF1β are also examined in the golph2 knockdown embryos, the expression of WT1 is increased in the glomus and expanded laterally in the pronephric region. We conclude that the deletion of golph2 causes an increase in the expression of WT1, which may promote glomus formation and inhibit pronephric tubule differentiation

Generation of Immortal Cell Lines from the Adult Pituitary: Role of cAMP on Differentiation of SOX2-Expressing Progenitor Cells to Mature Gonadotropes

The pituitary is a complex endocrine tissue composed of a number of unique cell types distinguished by the expression and secretion of specific hormones, which in turn control critical components of overall physiology. The basic function of these cells is understood; however, the molecular events involved in their hormonal regulation are not yet fully defined. While previously established cell lines have provided much insight into these regulatory mechanisms, the availability of representative cell lines from each cell lineage is limited, and currently none are derived from adult pituitary. We have therefore used retroviral transfer of SV40 T-antigen to mass immortalize primary pituitary cell culture from an adult mouse. We have generated 19 mixed cell cultures that contain cells from pituitary cell lineages, as determined by RT-PCR analysis and immunocytochemistry for specific hormones. Some lines expressed markers associated with multipotent adult progenitor cells or transit-amplifying cells, including SOX2, nestin, S100, and SOX9. The progenitor lines were exposed to an adenylate cyclase activator, forskolin, over 7 days and were induced to differentiate to a more mature gonadotrope cell, expressing significant levels of α-subunit, LHβ, and FSHβ mRNAs. Additionally, clonal populations of differentiated gonadotropes were exposed to 30 nM gonadotropin-releasing hormone and responded appropriately with a significant increase in α-subunit and LHβ transcription. Further, exposure of the lines to a pulse paradigm of GnRH, in combination with 17β-estradiol and dexamethasone, significantly increased GnRH receptor mRNA levels. This array of adult-derived pituitary cell models will be valuable for both studies of progenitor cell characteristics and modulation, and the molecular analysis of individual pituitary cell lineages

Dissecting the Transcriptional Regulatory Properties of Human Chromosome 16 Highly Conserved Non-Coding Regions

Non-coding DNA conservation across species has been often used as a predictor for transcriptional enhancer activity. However, only a few systematic analyses of the function of these highly conserved non-coding regions (HCNRs) have been performed. Here we use zebrafish transgenic assays to perform a systematic study of 113 HCNRs from human chromosome 16. By comparing transient and stable transgenesis, we show that the first method is highly inefficient, leading to 40% of false positives and 20% of false negatives. When analyzed in stable transgenic lines, a great majority of HCNRs were active in the central nervous system, although some of them drove expression in other organs such as the eye and the excretory system. Finally, by testing a fraction of the HCNRs lacking enhancer activity for in vivo insulator activity, we find that 20% of them may contain enhancer-blocking function. Altogether our data indicate that HCNRs may contain different types of cis-regulatory activity, including enhancer, insulators as well as other not yet discovered functions

Top-Down Control of Herbivory by Birds and Bats in the Canopy of Temperate Broad-Leaved Oaks (Quercus robur)

The intensive foraging of insectivorous birds and bats is well known to reduce the density of arboreal herbivorous arthropods but quantification of collateral leaf damage remains limited for temperate forest canopies

Conservation planning in a fire-prone Mediterranean region: threats and opportunities for bird species

In response to the processes threatening biodiversity such as habitat loss, effective selection of priority conservation areas is required. However, reserve selection methods usually ignore the drivers of future habitat changes, thus compromising the effectiveness of conservation. In this work, we formulated an approach to explicitly quantify the impact of fire on conservation areas, considering such disturbance as a driver of land-cover changes. The estimated fire impact was integrated as a constraint in the reserve selection process to tackle the likely threats or opportunities that fire disturbance might cause to the targeted species depending on their habitat requirements. In this way, we selected conservation areas in a fire-prone Mediterranean region for two bird assemblages: forest and open-habitat species. Differences in conservation areas selected before and after integrating the impact of fire in the reserve selection process were assessed. Integration of fire impact for forest species moved preferences towards areas that were less prone to burn. However, a larger area was required to achieve the same conservation goals. Conversely, integration of fire impacts for open-habitat species shifted preferences towards conservation areas in locations where the persistence of their required habitat is more likely (i.e. shrublands). In other words, we prioritized the conservation of not only the current distribution of open-habitat birds, but also the disturbance process (i.e. fire) that favours their preferred habitat and distributions in the long term. Finally, this work emphasizes the need to consider the opposing potential impacts of wildfires on species for an effective conservation planning