Growth and characterization of bismuth perovskite thin films for integrated magneto-optical isolator applications

Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Materials Science and Engineering, 2007.Includes bibliographical references (leaves 145-156).In this thesis, we discuss the motivation for integrated magneto-optical isolators and explain why the orthoferrite is such an attractive materials class for this purpose. We then derive from first physical principles the dependence of Faraday rotation, absorption, and certain figures of merit on the material's dielectric tensor elements. Next, we use pulsed laser deposition to grow thin films of BiFeO3 on MgO (001) and SrTiO3 (001) substrates. After optimizing growth conditions to obtain high quality films, we characterize the films' crystal structure with two-dimensional x-ray diffraction. We then examine the magnetic, optical, and magneto-optical properties of these films. We find that the highly textured films grown on SrTiO3 are monoclinic with an out-of-plane c-axis aligned with the (001) direction of the substrate and approximate pseudocubic lattice parameters of a = b = 4.04 A, c = 3.95 A, and 90° - [beta] = -0.88°. These films are weakly magnetic, with a magnetization of 1.2 emu/cm3 at an applied field of 10 kOe; highly absorptive, with an average absorption coefficient of 910 cm-1; and possess a low specific Faraday rotation of 320/cm at 1.8 kOe of applied field. As expected, we find that the magneto-optical figure of merit is negligible for this material due to its high absorption, which we attribute to a thin surface layer of phase separated bismuth and iron oxides caused by bismuth segregation during growth. We offer additional explanations for these values and show the first results of newer, more promising work with mixed cation perovskite.by Alexander R. Taussig.S.M

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

Experience from different fields of life sciences suggests that accessible, complete reference maps of the components of the system under study are highly beneficial research tools. Examples of such maps include libraries of the spectroscopic properties of molecules, or databases of drug structures in analytical or forensic chemistry. Such maps, and methods to navigate them, constitute reliable assays to probe any sample for the presence and amount of molecules contained in the map. So far, attempts to generate such maps for any proteome have failed to reach complete proteome coverage. Here we use a strategy based on high-throughput peptide synthesis and mass spectrometry to generate an almost complete reference map (97% of the genome-predicted proteins) of the Saccharomyces cerevisiae proteome. We generated two versions of this mass-spectrometric map, one supporting discovery-driven (shotgun) and the other supporting hypothesis-driven (targeted) proteomic measurements. Together, the two versions of the map constitute a complete set of proteomic assays to support most studies performed with contemporary proteomic technologies. To show the utility of the maps, we applied them to a protein quantitative trait locus (QTL) analysis, which requires precise measurement of the same set of peptides over a large number of samples. Protein measurements over 78 S. cerevisiae strains revealed a complex relationship between independent genetic loci, influencing the levels of related proteins. Our results suggest that selective pressure favours the acquisition of sets of polymorphisms that adapt protein levels but also maintain the stoichiometry of functionally related pathway members