Comparing the R algorithm and RHMC for staggered fermions

The R algorithm is widely used for simulating two flavours of dynamical staggered fermions. We give a simple proof that the algorithm converges to the desired probability distribution to within O(dt^2) errors, but show that the relevant expansion parameter is (dt/m)^2, m being the quark mass. The Rational Hybrid Monte Carlo (RHMC) algorithm provides an exact (i.e., has no step size errors) alternative for simulating the square root of the staggered Dirac operator. We propose using it to test the validity of the R algorithm for simulations carried out with dt m.Comment: 3 pages, proceedings from Lattice 2002 poster presentatio

Thermometry of ultracold atoms via non-equilibrium work distributions

Estimating the temperature of a cold quantum system is difficult. Usually, one measures a well-understood thermal state and uses that prior knowledge to infer its temperature. In contrast, we introduce a method of thermometry that assumes minimal knowledge of the state of a system and is potentially non-destructive. Our method uses a universal temperature-dependence of the quench dynamics of an initially thermal system coupled to a qubit probe that follows from the Tasaki-Crooks theorem for non-equilibrium work distributions. We provide examples for a cold-atom system, in which our thermometry protocol may retain accuracy and precision at subnanokelvin temperatures.Comment: Updated to published version. 6 pages plus 11 pages of supplemental material, and some numerical dat

Multiple scattering of polarized radiation by non-spherical grains: first results

We present the first numerical radiative transfer simulation of multiple light scattering in dust configurations containing aligned non-spherical (spheroidal) dust grains. Such models are especially important if one wants to explain the circular polarization of light, observed in a variety of astronomical objects. The radiative transfer problem is solved on the basis of the Monte Carlo method. Test simulations, confirming the correct numerical implementation of the scattering mechanism, are presented. As a first application, we investigate the linear and circular polarization of light coming from a spherical circumstellar shell. This shell contains perfectly aligned prolate or oblate spheroidal grains. The most remarkable features of the simulated linear polarization maps are so-called polarization null points where the reversal of polarization occurs. They appear in the case when the grain alignment axis is perpendicular to the line of sight. The maps of circular polarization have a sector-like structure with maxima at the ends of lines inclined to the grain alignment axis by \pm 45\degr.Comment: 13 pages, 14 figures, accepted by A&

Investigation of a VLSI neural network chip as part of a secondary vertex trigger

Abstract An analog VLSI neural network chip (ETANN) has been trained to detect secondary vertices in simulated data for a fixed target heavy flavour production experiment. The detector response and associative memory track finding were modelled by a simulation, but the vertex detection was performed in hardware by the neural network chip and requires only a few microseconds per event. The chip correctly tags 30% of the heavy flavour events while rejecting 99% of the background, and is thus well adapted for secondary vertex triggering applications. A general purpose VME module for interfacing the ETANN to experiments, equipped with ADC/DAC circuits and a 68070 CPU, is also presented

Claudins in intestines

Intestines are organs that not only digest food and absorb nutrients, but also provide a defense barrier against pathogens and noxious agents ingested. Tight junctions (TJs) are the most apical component of the junctional complex, providing one form of cell-cell adhesion in enterocytes and playing a critical role in regulating paracellular barrier permeability. Alteration of TJs leads to a number of pathophysiological diseases causing malabsorption of nutrition and intestinal structure disruption, which may even contribute to systemic organ failure. Claudins are the major structural and functional components of TJs with at least 24 members in mammals. Claudins have distinct charge-selectivity, either by tightening the paracellular pathway or functioning as paracellular channels, regulating ions and small molecules passing through the paracellular pathway. In this review, we have discussed the functions of claudin family members, their distribution and localization in the intestinal tract of mammals, their alterations in intestine-related diseases and chemicals/agents that regulate the expression and localization of claudins as well as the intestinal permeability, which provide a therapeutic view for treating intestinal diseases

Contribution of Matrix Metalloproteinase-9 to Cerebral Edema and Functional Outcome following Experimental Subarachnoid Hemorrhage

Background: Cerebral edema is an important risk factor for death and poor outcome following subarachnoid hemorrhage (SAH). However, underlying mechanisms are still poorly understood. Matrix metalloproteinase (MMP)-9 is held responsible for the degradation of microvascular basal lamina proteins leading to blood-brain barrier dysfunction and, thus, formation of vasogenic cerebral edema. The current study was conducted to clarify the role of MMP-9 for the development of cerebral edema and for functional outcome after SAH. Methods: SAH was induced in FVB/N wild-type (WT) or MMP-9 knockout (MMP-9(-/-)) mice by endovascular puncture. Intracranial pressure (ICP), regional cerebral blood flow (rCBF), and mean arterial blood pressure (MABP) were continuously monitored up to 30 min after SAH. Mortality was quantified for 7 days after SAH. In an additional series neurological function and body weight were assessed for 3 days after SAH. Subsequently, ICP and brain water content were quantified. Results: Acute ICP, rCBF, and MABP did not differ between WT and MMP-9(-/-) mice, while 7 days' mortality was lower in MMP-9(-/-) mice (p = 0.03; 20 vs. 60%). MMP-9(-/-) mice also exhibited better neurological recovery, less brain edema formation, and lower chronic ICP. Conclusions: The results of the current study suggest that MMP-9 contributes to the development of early brain damage after SAH by promoting cerebral edema formation. Hence, MMP-9 may represent a novel molecular target for the treatment of SAH. Copyright (C) 2011 S. Karger AG, Base

Parameterized Edge Hamiltonicity

We study the parameterized complexity of the classical Edge Hamiltonian Path problem and give several fixed-parameter tractability results. First, we settle an open question of Demaine et al. by showing that Edge Hamiltonian Path is FPT parameterized by vertex cover, and that it also admits a cubic kernel. We then show fixed-parameter tractability even for a generalization of the problem to arbitrary hypergraphs, parameterized by the size of a (supplied) hitting set. We also consider the problem parameterized by treewidth or clique-width. Surprisingly, we show that the problem is FPT for both of these standard parameters, in contrast to its vertex version, which is W-hard for clique-width. Our technique, which may be of independent interest, relies on a structural characterization of clique-width in terms of treewidth and complete bipartite subgraphs due to Gurski and Wanke

Optical Spectroscopic Observations of CI Camelopardalis

We present the results of optical spectroscopic observations of CI Cam. Double-peaked profiles were simultaneously observed for the first time in the hydrogen Balmer, He {\small I} $\lambda$6678 and Fe {\small II} lines during an observational run in 2001 September. An intermediate viewing angle of the circumstellar disk around the B[e] star is consistent with our data. A significant decrease in the intensity of the H$\alpha$ and He {\small I} lines in our 2004 September observations might have been the precursor of a line outburst at the end of 2004. The remarkable increase in the intensity of all lines and the decrease in visual brightness in 2005 might be due to the environment filling with new material ejected during the outburst. The environment of CI Cam is influenced by mass loss from the B[e] star and the outburst of its compact companion.Comment: 18 pages, 4 figures, 1 tabl

James Hutton’s geological tours of Scotland : romanticism, literary strategies, and the scientific quest

This article explores a somewhat neglected part of the story of the emergence of geology as a science and discourse in the late eighteenth century – James Hutton’s posthumously published accounts of the geological tours of Scotland that he undertook in the years 1785 to 1788 in search of empirical evidence in support of his theory of the Earth and that he intended to include in the projected third volume of his Theory of the Earth of 1795. The article brings some of the assumptions and techniques of literary criticism to bear on Hutton’s scientific travel writing in order to open up new connections between geology, Romantic aesthetics and eighteenth-century travel writing about Scotland. Close analysis of Hutton’s accounts of his field trips to Glen Tilt, Galloway and Arran, supplemented by later accounts of the discoveries at Jedburgh and Siccar Point, reveals the interplay between desire, travel and the scientific quest and foregrounds the textual strategies that Hutton uses to persuade his readers that they share in the experience of geological discovery and interpretation as ‘virtual witnesses’. As well as allowing us to revisit the interrelation between scientific theory and discovery, this article concludes that Hutton was a much better writer than he has been given credit for and suggests that if these geological tours had been published in 1795 they would have made it impossible for critics to dismiss him as an armchair geologist

Estimating the welfare loss to households from natural disasters in developing countries: a contingent valuation study of flooding in Vietnam

Background: Natural disasters have severe impacts on the health and well-being of affected households. However, we find evidence that official damage cost assessments for floods and other natural disasters in Vietnam, where households have little or no insurance, clearly underestimate the total economic damage costs of these events as they do not include the welfare loss from mortality, morbidity and reduced well-being experienced by the households affected by the floods. This should send a message to the local communities and national authorities that higher investments in flood alleviation, reduction and adaptive measures can be justified since the social benefits of these measures in terms of avoided damage costs are higher than previously thought. Methods: We pioneer the use of the contingent valuation (CV) approach of willingness-to-contribute (WTC) labour to a flood prevention program, as a measure of the welfare loss experienced by household due to a flooding event. In a face-to-face household survey of 706 households in the Quang Nam province in Central Vietnam, we applied this approach together with reported direct physical damage in order to shed light of the welfare loss experienced by the households. We asked about households’ WTC labour and multiplied their WTC person-days of labour by an estimate for their opportunity cost of time in order to estimate the welfare loss to households from the 2007 floods. Results: The results showed that this contingent valuation (CV) approach of asking about willingness-to-pay in-kind avoided the main problems associated with applying CV in developing countries. Conclusion: Thus, the CV approach of WTC labour instead of money is promising in terms of capturing the total welfare loss of natural disasters to households, and promising in terms of further application in other developing countries and for other types of natural disasters