A late medieval warm period in the Southern Ocean as a delayed response to external forcing?

International audienceOn the basis of long simulations performed with a three‐dimensional climate model, we propose an interhemispheric climate lag mechanism, involving the long‐term memory of deepwater masses. Warm anomalies, formed in the North Atlantic when warm conditions prevail at surface, are transported by the deep ocean circulation towards the Southern Ocean. There, the heat is released because of large scale upwelling, maintaining warm conditions and inducing a lagged response of about 150 years compared to the Northern Hemisphere. Model results and observations covering the first half of the second millenium suggest a delay between the temperature evolution in the Northern Hemisphere and in the Southern Ocean. The mechanism described here provides a reasonable hypothesis to explain such an interhemipsheric lag

Protein multi-scale organization through graph partitioning and robustness analysis: Application to the myosin-myosin light chain interaction

Despite the recognized importance of the multi-scale spatio-temporal organization of proteins, most computational tools can only access a limited spectrum of time and spatial scales, thereby ignoring the effects on protein behavior of the intricate coupling between the different scales. Starting from a physico-chemical atomistic network of interactions that encodes the structure of the protein, we introduce a methodology based on multi-scale graph partitioning that can uncover partitions and levels of organization of proteins that span the whole range of scales, revealing biological features occurring at different levels of organization and tracking their effect across scales. Additionally, we introduce a measure of robustness to quantify the relevance of the partitions through the generation of biochemically-motivated surrogate random graph models. We apply the method to four distinct conformations of myosin tail interacting protein, a protein from the molecular motor of the malaria parasite, and study properties that have been experimentally addressed such as the closing mechanism, the presence of conserved clusters, and the identification through computational mutational analysis of key residues for binding.Comment: 13 pages, 7 Postscript figure

Precipitation Water Stable Isotopes in the South Tibetan Plateau: Observations and Modeling

International audienceMeasurements of precipitation isotopic composition have been conducted on a daily basis for 1 yr at Bomi, in the southeast Tibetan Plateau, an area affected by the interaction of the southwest monsoon, the westerlies, and Tibetan high pressure systems, as well as at Lhasa, situated west of Bomi. The measured isotope signals are analyzed both on an event basis and on a seasonal scale using available meteorological information and airmass trajectories. The processes driving daily and seasonal isotopic variability are investigated using multidecadal climate simulations forced by twentieth-century boundary conditions and conducted with two different isotopic atmospheric general circulation models [the isotopic version of the Laboratoire de Meteorologie Dynamique GCM (LMDZiso) and the ECHAM4iso model]. Both models use specific nudging techniques to mimic observed atmospheric circulation fields. The models simulate a wet and cold bias on the Tibetan Plateau together with a dry bias in its southern part. A zoomed LMDZ simulation conducted with similar to 50-km local spatial resolution dramatically improves the simulation of isotopic compositions of precipitation on the Tibetan Plateau. Simulated water isotope fields are compared with new data and with previous observations, and regional differences in moisture origins are analyzed using back-trajectories. Here, the focus is on relationships between the water isotopes and climate variables on an event and seasonal scale and in terms of spatial and altitudinal isotopic gradients. Enhancing the spatial resolution is crucial for improving the simulation of the precipitation isotopic composition

Diffusive limits on the Penrose tiling

In this paper random walks on the Penrose lattice are investigated. Heat kernel estimates and the invariance principle are shown

A simple catch: Fluctuations enable hydrodynamic trapping of microrollers by obstacles

It is known that obstacles can hydrodynamically trap bacteria and synthetic microswimmers in orbits, where the trapping time heavily depends on the swimmer flow field and noise is needed to escape the trap. Here, we use experiments and simulations to investigate the trapping of microrollers by obstacles. Microrollers are rotating particles close to a bottom surface, which have a prescribed propulsion direction imposed by an external rotating magnetic field. The flow field that drives their motion is quite different from previously studied swimmers. We found that the trapping time can be controlled by modifying the obstacle size or the colloid-obstacle repulsive potential. We detail the mechanisms of the trapping and find two remarkable features: The microroller is confined in the wake of the obstacle, and it can only enter the trap with Brownian motion. While noise is usually needed to escape traps in dynamical systems, here, we show that it is the only means to reach the hydrodynamic attractor.“la Caixa” Foundation (ID 100010434), fellowship LCF/BQ/-PI20/11760014. The European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 847648

Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola

Mating types are self-incompatibility systems that promote outcrossing in plants, fungi, and oomycetes. Mating-type genes have been widely studied in plants and fungi but have yet to be identified in oomycetes, eukaryotic organisms closely related to brown algae that cause many destructive animal and plant diseases. We identified the mating-type locus of Plasmopara viticola, the oomycete responsible for grapevine downy mildew, one of the most damaging grapevine diseases worldwide. Using a genome-wide association approach, we identified a 570-kb repeat-rich non-recombining region controlling mating types, with two highly divergent alleles. We showed that one mating type was homozygous, whereas the other was heterozygous at this locus. The mating-type locus encompassed 40 genes, including one encoding a putative hormone receptor. Functional studies will, however, be required to validate the function of these genes and find the actual determinants of mating type. Our findings have fundamental implications for our understanding of the evolution of mating types, as they reveal a unique determinism involving an asymmetry of heterozygosity, as in sex chromosomes and unlike other mating-type systems. This identification of the mating-type locus in such an economically important crop pathogen also has applied implications, as outcrossing facilitates rapid evolution and resistance to harsh environmental conditions

Trapping in the random conductance model

We consider random walks on $\Z^d$ among nearest-neighbor random conductances which are i.i.d., positive, bounded uniformly from above but whose support extends all the way to zero. Our focus is on the detailed properties of the paths of the random walk conditioned to return back to the starting point at time $2n$. We show that in the situations when the heat kernel exhibits subdiffusive decay --- which is known to occur in dimensions $d\ge4$ --- the walk gets trapped for a time of order $n$ in a small spatial region. This shows that the strategy used earlier to infer subdiffusive lower bounds on the heat kernel in specific examples is in fact dominant. In addition, we settle a conjecture concerning the worst possible subdiffusive decay in four dimensions.Comment: 21 pages, version to appear in J. Statist. Phy

Polynomial Growth Harmonic Functions on Finitely Generated Abelian Groups

In the present paper, we develop geometric analytic techniques on Cayley graphs of finitely generated abelian groups to study the polynomial growth harmonic functions. We develop a geometric analytic proof of the classical Heilbronn theorem and the recent Nayar theorem on polynomial growth harmonic functions on lattices \mathds{Z}^n that does not use a representation formula for harmonic functions. We also calculate the precise dimension of the space of polynomial growth harmonic functions on finitely generated abelian groups. While the Cayley graph not only depends on the abelian group, but also on the choice of a generating set, we find that this dimension depends only on the group itself.Comment: 15 pages, to appear in Ann. Global Anal. Geo

The Composition and Organization of Cytoplasm in Prebiotic Cells

This article discusses the hypothesized composition and organization of cytoplasm in prebiotic cells from a theoretical perspective and also based upon what is currently known about bacterial cytoplasm. It is unknown if the first prebiotic, microscopic scale, cytoplasm was initially contained within a primitive, continuous, semipermeable membrane, or was an uncontained gel substance, that later became enclosed by a continuous membrane. Another possibility is that the first cytoplasm in prebiotic cells and a primitive membrane organized at the same time, permitting a rapid transition to the first cell(s) capable of growth and division, thus assisting with the emergence of life on Earth less than a billion years after the formation of the Earth. It is hypothesized that the organization and composition of cytoplasm progressed initially from an unstructured, microscopic hydrogel to a more complex cytoplasm, that may have been in the volume magnitude of about 0.1–0.2 µm3 (possibly less if a nanocell) prior to the first cell division