88 research outputs found
Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis
Влияние недропользования на социально-экономическое развитие Томской области
Анализ влияния деятельности нефтегазового комплекса на социально-экономическое развитие Томской области.Analysis of the impact of the oil and gas industry on the social and economic development of the Tomsk region
Primary modes of tree mortality in southwestern Amazon forests
Tree mortality rates and the modes of tree death have recently been extensively investigated in the Amazon. However, efforts to describe these processes have not been well distributed across the basin. No study has yet investigated in depth tree mortality process in the unique low, open, bamboo-dominated forests of southwestern Amazonia, a region with a distinct climate and the epicenter of recent severe drought events. Here, we investigated the leading ways that trees die in the terra-firme forests of the southwestern Brazilian Amazon, to understand whether the dynamics of mortality differ from those recorded in other parts of the basin. Using data from six permanent plots located in southwestern Amazonia, we calculated the mortality rate for three main modes of tree death: standing, broken and uprooted. We thus identified the predominant mode of death over a 14 year period (2002–2016). We found that trees in the southwestern Amazon died mainly standing (325 trees, 0.8% year−1) and broken (362 trees, 0.8% year−1); significantly fewer trees died uprooted (156 trees, 0.4% year−1, equivalent to less than one in five of all trees dying). During the study period, the tree mode of death with the greatest proportion in the region alternated between standing and broken trees. Forest characteristics of the southwestern Amazon, like presence and high density of bamboo culms, and the fact that the region was subject to severe droughts in 2005 and 2010, may be affecting how trees die in southwestern Amazon. The presence of these factors makes the forest dynamics of the southwestern Amazon different from other regions of the Amazon basin
Gene expression of estrogen receptor, progesterone receptor and microtubule-associated protein Tau in high-risk early breast cancer: a quest for molecular predictors of treatment benefit in the context of a Hellenic Cooperative Oncology Group trial
Seasonal drought limits tree species across the Neotropics
Within the tropics, the species richness of tree communities is strongly and positively associated with precipitation. Previous research has suggested that this macroecological pattern is driven by the negative effect of water-stress on the physiological processes of most tree species. This process implies that the range limits of taxa are defined by their ability to occur under dry conditions, and thus in terms of species distributions it predicts a nested pattern of taxa distribution from wet to dry areas. However, this ‘dry-tolerance’ hypothesis has yet to be adequately tested at large spatial and taxonomic scales. Here, using a dataset of 531 inventory plots of closed canopy forest distributed across the Western Neotropics we investigated how precipitation, evaluated both as mean annual precipitation and as the maximum climatological water deficit, influences the distribution of tropical tree species, genera and families. We find that the distributions of tree taxa are indeed nested along precipitation gradients in the western Neotropics. Taxa tolerant to seasonal drought are disproportionally widespread across the precipitation gradient, with most reaching even the wettest climates sampled; however, most taxa analysed are restricted to wet areas. Our results suggest that the ‘dry tolerance’ hypothesis has broad applicability in the world's most species-rich forests. In addition, the large number of species restricted to wetter conditions strongly indicates that an increased frequency of drought could severely threaten biodiversity in this region. Overall, this study establishes a baseline for exploring how tropical forest tree composition may change in response to current and future environmental changes in this region
Seasonal drought limits tree species across the Neotropics
AcceptedArticle in Press© 2016 Nordic Society Oikos.Within the tropics, the species richness of tree communities is strongly and positively associated with precipitation. Previous research has suggested that this macroecological pattern is driven by the negative effect of water-stress on the physiological processes of most tree species. This implies that the range limits of taxa are defined by their ability to occur under dry conditions, and thus in terms of species distributions predicts a nested pattern of taxa distribution from wet to dry areas. However, this 'dry-tolerance' hypothesis has yet to be adequately tested at large spatial and taxonomic scales. Here, using a dataset of 531 inventory plots of closed canopy forest distributed across the western Neotropics we investigated how precipitation, evaluated both as mean annual precipitation and as the maximum climatological water deficit, influences the distribution of tropical tree species, genera and families. We find that the distributions of tree taxa are indeed nested along precipitation gradients in the western Neotropics. Taxa tolerant to seasonal drought are disproportionally widespread across the precipitation gradient, with most reaching even the wettest climates sampled; however, most taxa analysed are restricted to wet areas. Our results suggest that the 'dry tolerance' hypothesis has broad applicability in the world's most species-rich forests. In addition, the large number of species restricted to wetter conditions strongly indicates that an increased frequency of drought could severely threaten biodiversity in this region. Overall, this study establishes a baseline for exploring how tropical forest tree composition may change in response to current and future environmental changes in this region.This paper is a product of the RAINFOR and ATDN networks and of ForestPlots.net
researchers (http://www.forestplots.net). RAINFOR and ForestPlots have been
supported by a Gordon and Betty Moore Foundation grant, the European Union’s
Seventh Framework Programme (283080, ‘GEOCARBON’; 282664,
‘AMAZALERT’); European Research Council (ERC) grant ‘Tropical Forests in the
Changing Earth System’ (T-FORCES), and Natural Environment Research Council
(NERC) Urgency Grant and NERC Consortium Grants ‘AMAZONICA’
(NE/F005806/1) and ‘TROBIT’ (NE/D005590/1). Additional funding for fieldwork was
provided by Tropical Ecology Assessment and Monitoring (TEAM) Network, a
collaboration among Conservation International, the Missouri Botanical Garden, the
Smithsonian Institution, and the Wildlife Conservation Society. A.E.M. receives a PhD
scholarship from the T-FORCES ERC grant. O.L.P. is supported by an ERC Advanced
Grant and a Royal Society Wolfson Research Merit Award. We thank Jon J. Lloyd,
Chronis Tzedakis, David Galbraith, and two anonymous reviewers for helpful
comments and Dylan Young for helping with the analyses. This study would not be
possible without the extensive contributions of numerous field assistants and rural
communities in the Neotropical forests. Alfredo Alarcón, Patricia Alvarez Loayza,
Plínio Barbosa Camargo, Juan Carlos Licona, Alvaro Cogollo, Massiel Corrales
Medina, Jose Daniel Soto, Gloria Gutierrez, Nestor Jaramillo Jarama, Laura Jessica
Viscarra, Irina Mendoza Polo, Alexander Parada Gutierrez, Guido Pardo, Lourens
Poorter, Adriana Prieto, Freddy Ramirez Arevalo, Agustín Rudas, Rebeca Sibler and
Javier Silva Espejo additionally contributed data to this study though their RAINFOR
participations. We further thank those colleagues no longer with us, Jean Pierre Veillon,
Samuel Almeida, Sandra Patiño and Raimundo Saraiva. Many data come from Alwyn
Gentry, whose example has inspired new generations to investigate the diversity of the
Neotropics
Tree mode of death and mortality risk factors across Amazon forests
The carbon sink capacity of tropical forests is substantially affected by tree mortality. However, the main drivers of tropical tree death remain largely unknown. Here we present a pan-Amazonian assessment of how and why trees die, analysing over 120,000 trees representing > 3800 species from 189 long-term RAINFOR forest plots. While tree mortality rates vary greatly Amazon-wide, on average trees are as likely to die standing as they are broken or uprooted—modes of death with different ecological consequences. Species-level growth rate is the single most important predictor of tree death in Amazonia, with faster-growing species being at higher risk. Within species, however, the slowest-growing trees are at greatest risk while the effect of tree size varies across the basin. In the driest Amazonian region species-level bioclimatic distributional patterns also predict the risk of death, suggesting that these forests are experiencing climatic conditions beyond their adaptative limits. These results provide not only a holistic pan-Amazonian picture of tree death but large-scale evidence for the overarching importance of the growth–survival trade-off in driving tropical tree mortality
Tree mode of death and mortality risk factors across Amazon forests
The carbon sink capacity of tropical forests is substantially affected by tree mortality. However, the main drivers of tropical tree death remain largely unknown. Here we present a pan-Amazonian assessment of how and why trees die, analysing over 120,000 trees representing > 3800 species from 189 long-term RAINFOR forest plots. While tree mortality rates vary greatly Amazon-wide, on average trees are as likely to die standing as they are broken or uprooted—modes of death with different ecological consequences. Species-level growth rate is the single most important predictor of tree death in Amazonia, with faster-growing species being at higher risk. Within species, however, the slowest-growing trees are at greatest risk while the effect of tree size varies across the basin. In the driest Amazonian region species-level bioclimatic distributional patterns also predict the risk of death, suggesting that these forests are experiencing climatic conditions beyond their adaptative limits. These results provide not only a holistic pan-Amazonian picture of tree death but large-scale evidence for the overarching importance of the growth–survival trade-off in driving tropical tree mortality
Carbon uptake by mature Amazon forests has mitigated Amazon nations' carbon emissions
Background: Several independent lines of evidence suggest that Amazon forests have provided a significant carbon
sink service, and also that the Amazon carbon sink in intact, mature forests may now be threatened as a result of
different processes. There has however been no work done to quantify non-land-use-change forest carbon fluxes on
a national basis within Amazonia, or to place these national fluxes and their possible changes in the context of the
major anthropogenic carbon fluxes in the region. Here we present a first attempt to interpret results from groundbased
monitoring of mature forest carbon fluxes in a biogeographically, politically, and temporally differentiated way.
Specifically, using results from a large long-term network of forest plots, we estimate the Amazon biomass carbon balance
over the last three decades for the different regions and nine nations of Amazonia, and evaluate the magnitude
and trajectory of these differentiated balances in relation to major national anthropogenic carbon emissions.
Results: The sink of carbon into mature forests has been remarkably geographically ubiquitous across Amazonia,
being substantial and persistent in each of the five biogeographic regions within Amazonia. Between 1980 and 2010,
it has more than mitigated the fossil fuel emissions of every single national economy, except that of Venezuela. For
most nations (Bolivia, Colombia, Ecuador, French Guiana, Guyana, Peru, Suriname) the sink has probably additionally
mitigated all anthropogenic carbon emissions due to Amazon deforestation and other land use change. While the
sink has weakened in some regions since 2000, our analysis suggests that Amazon nations which are able to conserve
large areas of natural and semi-natural landscape still contribute globally-significant carbon sequestration.
Conclusions: Mature forests across all of Amazonia have contributed significantly to mitigating climate change for
decades. Yet Amazon nations have not directly benefited from providing this global scale ecosystem service. We suggest
that better monitoring and reporting of the carbon fluxes within mature forests, and understanding the drivers
of changes in their balance, must become national, as well as international, priorities
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