Major and persistent shifts in below-ground carbon dynamics and soil respiration following logging in tropical forests

Soil respiration is the largest carbon efflux from the terrestrial ecosystem to the atmosphere, and selective logging influences soil respiration via changes in abiotic (temperature, moisture) and biotic (biomass, productivity, quantity and quality of necromass inputs) drivers. Logged forests are a predominant feature of the tropical forest landscape, their area exceeding that of intact forest. We quantified both total and component (root, mycorrhiza, litter, and soil organic matter, SOM) soil respiration in logged (n=5) and old-growth (n=6) forest plots in Malaysian Borneo, a region which is a global hotspot for emission from forest degradation. We constructed a detailed below-ground carbon budget including organic carbon inputs into the system via litterfall and root turnover. Total soil respiration was significantly higher in logged forests than in old-growth forests (14.3 \ub1 0.23 and 12.7 \ub1 0.60 Mg C ha-1 year-1, respectively, p=0.037). This was mainly due to the higher SOM respiration in logged forests (55% \ub1 3.1% of the total respiration in logged forests vs. 50% \ub1 3.0% in old-growth forests). In old-growth forests, annual SOM respiration was equal to the organic carbon inputs into the soil (difference between SOM respiration and inputs 0.18 Mg C ha-1 year-1, with 90% confidence intervals of -0.41 and 0.74 Mg C ha-1 year-1), indicating that the system is in equilibrium, while in logged forests SOM respiration exceeded the inputs by 4.2 Mg C ha-1 year-1 (90% CI of 3.6 and 4.9 Mg C ha-1 year-1), indicating that the soil is losing carbon. These results contribute towards understanding the impact of logging on below-ground carbon dynamics, which is one of the key uncertainties in estimating emissions from forest degradation. This study demonstrates how significant perturbation of the below-ground carbon balance, and consequent net soil carbon emissions, can persist for decades after a logging event in tropical forests

Environmental and vegetation controls on the spatial variability of CH4 emission from wet-sedge and tussock tundra ecosystems in the Arctic

Aims Despite multiple studies investigating the environmental controls on CH4 fluxes from arctic tundra ecosystems, the high spatial variability of CH4 emissions is not fully understood. This makes the upscaling of CH4 fluxes from plot to regional scale, particularly challenging. The goal of this study is to refine our knowledge of the spatial variability and controls on CH4 emission from tundra ecosystems. Methods CH4 fluxes were measured in four sites across a variety of wet-sedge and tussock tundra ecosystems in Alaska using chambers and a Los Gatos CO2 and CH4 gas analyser. Results All sites were found to be sources of CH4, with northern sites (in Barrow) showing similar CH4 emission rates to the southernmost site (ca. 300 km south, Ivotuk). Gross primary productivity (GPP), water level and soil temperature were the most important environmental controls on CH4 emission. Greater vascular plant cover was linked with higher CH4 emission, but this increased emission with increased vascular plant cover was much higher (86 %) in the drier sites, than the wettest sites (30 %), suggesting that transport and/or substrate availability were crucial limiting factors for CH4 emission in these tundra ecosystems. Conclusions Overall, this study provides an increased understanding of the fine scale spatial controls on CH4 flux, in particular the key role that plant cover and GPP play in enhancing CH4 emissions from tundra soils

The impact of logging on vertical canopy structure across a gradient of tropical forest degradation intensity in Borneo

Forest degradation through logging is pervasive throughout the world's tropical forests, leading to changes in the three-dimensional canopy structure that have profound consequences for wildlife, microclimate and ecosystem functioning. Quantifying these structural changes is fundamental to understanding the impact of degradation, but is challenging in dense, structurally complex forest canopies. We exploited discrete-return airborne LiDAR surveys across a gradient of logging intensity in Sabah, Malaysian Borneo, and assessed how selective logging had affected canopy structure (Plant Area Index, PAI, and its vertical distribution within the canopy). LiDAR products compared well to independent, analogue models of canopy structure produced from detailed ground-based inventories undertaken in forest plots, demonstrating the potential for airborne LiDAR to quantify the structural impacts of forest degradation at landscape scale, even in some of the world's tallest and most structurally complex tropical forests. Plant Area Index estimates across the plot network exhibited a strong linear relationship with stem basal area (R2 = 0.95). After at least 11–14 years of recovery, PAI was ~28% lower in moderately logged plots and ~52% lower in heavily logged plots than that in old-growth forest plots. These reductions in PAI were associated with near-complete lack of trees >30-m tall, which had not been fully compensated for by increasing plant area lower in the canopy. This structural change drives a marked reduction in the diversity of canopy environments, with the deep, dark understorey conditions characteristic of old-growth forests far less prevalent in logged sites. Full canopy recovery is likely to take decades. Synthesis and applications. Effective management and restoration of tropical forests requires detailed monitoring of the forest and its environment. We demonstrate that airborne LiDAR can effectively map the canopy architecture of the complex tropical forests of Borneo, capturing the three-dimensional impact of degradation on canopy structure at landscape scales, therefore facilitating efforts to restore and conserve these ecosystems

Extreme and highly heterogeneous microclimates in selectively logged tropical forests

Microclimate within forests influences ecosystem fluxes and demographic rates. Anthropogenic disturbances, such as selective logging can affect within-forest microclimate through effects on forest structure, leading to indirect effects on forests beyond the immediate impact of logging. However, the scope and predictability of these effects remains poorly understood. Here we use a microclimate thermal proxy (sensitive to radiative, convective, and conductive heat fluxes) measured at the forest floor in three 1-ha forest plots spanning a logging intensity gradient in Malaysian Borneo. We show (1) that thermal proxy ranges and spatiotemporal heterogeneity are doubled between old growth and heavily logged forests, with extremes often exceeding 45°C, (2) that nearby weather station air temperatures provide estimates of maximum thermal proxy values that are biased down by 5–10°C, and (3) that lower canopy density, higher canopy height, and higher biomass removal are associated with higher maximum temperatures. Thus, logged forests are less buffered from regional climate change than old growth forests, and experience much higher microclimate extremes and heterogeneity. Better predicting the linkages between regional climate and its effects on within-forest microclimate will be critical for understanding the wide range of conditions experienced within tropical forests

Large contribution of recent photosynthate to soil respiration in tropical dipterocarp forest revealed by girdling

Tropical forests are the most productive terrestrial ecosystems, fixing over 40 Pg of carbon from the atmosphere each year. A substantial portion of this carbon is allocated below-ground to roots and root-associated micro-organisms. However, there have been very few empirical studies on the dynamics of this below ground transfer, especially in tropical forests where carbon allocation processes are influenced by high plant species diversity. We used a whole-stand girdling experiment to halt the below-ground transfer of recent photosynthates in a lowland tropical forest in Borneo. By girdling 209 large trees in a 0.48 ha plot, we determined: (a) the contribution of recent photosynthate to root-rhizosphere respiration and; (b) the relationships among the disruption of this below-ground carbon supply, tree species composition and mortality. Mortality of the 209 trees was 62% after 370 days, with large variation among species and particularly high mortality within the Dipterocarpaceae (99%) and Fagaceae (100%) families. We also observed a higher risk of mortality following girdling for species with lower wood density. Soil CO2 emissions declined markedly (36 \ub1 5%) over ~50 days following girdling in three of six monitored subplots. In the other three subplots there was either a marginal decline or no response of soil CO2 emissions to girdling. The decrease in soil CO2 efflux was larger in subplots with dominance of Dipterocarpaceae. Synthesis. Our results indicate high spatial variation in the coupling of below-ground carbon allocation and root-rhizosphere respiration in this tropical forest, with a closer coupling in forest dominated by Dipterocarpaceae. Our findings highlight the implications of tree species composition of tropical forests in affecting the dynamics of below-ground carbon transfer and its release to the atmosphere

Relationships between tree growth and weather extremes: spatial and interspecific comparisons in a temperate broadleaf forest

Three years of monthly growth increment data identified large interannual differences in growth rate across six contrasting species in a broadleaved, temperate forest with minimum management intervention (Wytham Woods, UK). Growth rates varied by species and canopy position, and were higher in canopy species. Growth rate in 2010 was up to 40% lower than in 2011 and 2012. This can best be explained as an effect of low temperature, which delayed the start of spring and the growing season. This had a greater impact on the growth of sub-canopy trees than that of canopy species. In temperate systems, late spring and summer is an important component of the whole growing season carbon balance because of long day length. In 2010 there were also periods of lower-than-average rainfall, which may additionally have constrained growth during the growing season. Fluctuations and seasonal changes in both temperature and rainfall are projected to continue, so we may expect to see increasing differences in growth and growth rates. A small effect of location relative to the nearest edge was also detected, with higher growth rates only found >50. m from the forest edge. The findings have implications for forest structure and productivity under climate change, and may thus inform current and future forest management

Measurements of hydrocarbon emissions from a boreal fen using the REA technique

Fluxes of biogenic volatile organic compounds (VOC) and methane were measured above a boreal fen. Vegetation on the fen is dominated by Sphagnum mosses and sedges. A relaxed eddy accumulation (REA) system with dynamic deadband was designed and constructed for the measurements. Methane, C-2-C-6 hydrocarbons and some halogenated hydrocarbons were analysed from the samples by gas chromatographs equipped with FID and ECD. A significant flux of isoprene and methane was detected during the growing seasons. Isoprene emission was found to follow the common isoprene emission algorithm. Average standard emission potential of isoprene was 680 mu g m(-2) h(-1). Fluxes of other non-methane hydrocarbons were below detection limit.Fluxes of biogenic volatile organic compounds (VOC) and methane were measured above a boreal fen. Vegetation on the fen is dominated by Sphagnum mosses and sedges. A relaxed eddy accumulation (REA) system with dynamic deadband was designed and constructed for the measurements. Methane, C-2-C-6 hydrocarbons and some halogenated hydrocarbons were analysed from the samples by gas chromatographs equipped with FID and ECD. A significant flux of isoprene and methane was detected during the growing seasons. Isoprene emission was found to follow the common isoprene emission algorithm. Average standard emission potential of isoprene was 680 mu g m(-2) h(-1). Fluxes of other non-methane hydrocarbons were below detection limit.Fluxes of biogenic volatile organic compounds (VOC) and methane were measured above a boreal fen. Vegetation on the fen is dominated by Sphagnum mosses and sedges. A relaxed eddy accumulation (REA) system with dynamic deadband was designed and constructed for the measurements. Methane, C-2-C-6 hydrocarbons and some halogenated hydrocarbons were analysed from the samples by gas chromatographs equipped with FID and ECD. A significant flux of isoprene and methane was detected during the growing seasons. Isoprene emission was found to follow the common isoprene emission algorithm. Average standard emission potential of isoprene was 680 mu g m(-2) h(-1). Fluxes of other non-methane hydrocarbons were below detection limit.Peer reviewe

Imaging spectroscopy reveals the effects of topography and logging on the leaf chemistry of tropical forest canopy trees

Logging, pervasive across the lowland tropics, affects millions of hectares of forest, yet its influence on nutrient cycling remains poorly understood. One hypothesis is that logging influences phosphorus (P) cycling, because this scarce nutrient is removed in extracted timber and eroded soil, leading to shifts in ecosystem functioning and community composition. However, testing this is challenging because P varies within landscapes as a function of geology, topography and climate. Superimposed upon these trends are compositional changes in logged forests, with species with more acquisitive traits, characterized by higher foliar P concentrations, more dominant. It is difficult to resolve these patterns using traditional field approaches alone. Here, we use airborne light detection and ranging‐guided hyperspectral imagery to map foliar nutrient (i.e. P, nitrogen [N]) concentrations, calibrated using field measured traits, over 400 km2 of northeastern Borneo, including a landscape‐level disturbance gradient spanning old‐growth to repeatedly logged forests. The maps reveal that canopy foliar P and N concentrations decrease with elevation. These relationships were not identified using traditional field measurements of leaf and soil nutrients. After controlling for topography, canopy foliar nutrient concentrations were lower in logged forest than in old‐growth areas, reflecting decreased nutrient availability. However, foliar nutrient concentrations and specific leaf area were greatest in relatively short patches in logged areas, reflecting a shift in composition to pioneer species with acquisitive traits. N:P ratio increased in logged forest, suggesting reduced soil P availability through disturbance. Through the first landscape scale assessment of how functional leaf traits change in response to logging, we find that differences from old‐growth forest become more pronounced as logged forests increase in stature over time, suggesting exacerbated phosphorus limitation as forests recover

From tree to plot: investigating stem CO₂ efflux and its drivers along a logging gradient in Sabah, Malaysian Borneo

Stem respiration constitutes a substantial proportion of autotrophic respiration in forested ecosystems, but its drivers across different spatial scales and land-use gradients remain poorly understood. This study quantifies and examines the impact of logging disturbance on stem CO2 efflux (EA) in Malaysian Borneo. EA was quantified at tree- and stand-level in nine 1-ha plots over a logging gradient from heavily logged to old-growth using the static chamber method.<br /> Tree-level results showed higher EA per unit stem area in logged vs old-growth plots (37.0 +/- 1.1 vs 26.92 +/- 1.14 g C m(-2) month(-1)). However, at stand-level, there was no difference in EA between logged and old-growth plots (6.7 +/- 1.1 vs 6.0 +/- 0.7 Mg C ha(-1) yr(-1)) due to greater stem surface area in old-growth plots. Allocation to growth respiration and carbon use efficiency was significantly higher in logged plots. Variation in EA at both tree- and stand-level was driven by tree size, growth and differences in investment strategies between the forest types.<br /> These results reflect different resource allocation strategies and priorities, with a priority for growth in response to increased light availability in logged plots, while old-growth plots prioritise maintenance and cell structure