MinMax Radon Barcodes for Medical Image Retrieval

Content-based medical image retrieval can support diagnostic decisions by clinical experts. Examining similar images may provide clues to the expert to remove uncertainties in his/her final diagnosis. Beyond conventional feature descriptors, binary features in different ways have been recently proposed to encode the image content. A recent proposal is "Radon barcodes" that employ binarized Radon projections to tag/annotate medical images with content-based binary vectors, called barcodes. In this paper, MinMax Radon barcodes are introduced which are superior to "local thresholding" scheme suggested in the literature. Using IRMA dataset with 14,410 x-ray images from 193 different classes, the advantage of using MinMax Radon barcodes over \emph{thresholded} Radon barcodes are demonstrated. The retrieval error for direct search drops by more than 15\%. As well, SURF, as a well-established non-binary approach, and BRISK, as a recent binary method are examined to compare their results with MinMax Radon barcodes when retrieving images from IRMA dataset. The results demonstrate that MinMax Radon barcodes are faster and more accurate when applied on IRMA images.Comment: To appear in proceedings of the 12th International Symposium on Visual Computing, December 12-14, 2016, Las Vegas, Nevada, US

Two-Dimensional Magnetic Resonance Tomographic Microscopy using Ferromagnetic Probes

We introduce the concept of computerized tomographic microscopy in magnetic resonance imaging using the magnetic fields and field gradients from a ferromagnetic probe. We investigate a configuration where a two-dimensional sample is under the influence of a large static polarizing field, a small perpendicular radio-frequency field, and a magnetic field from a ferromagnetic sphere. We demonstrate that, despite the non-uniform and non-linear nature of the fields from a microscopic magnetic sphere, the concepts of computerized tomography can be applied to obtain proper image reconstruction from the original spectral data by sequentially varying the relative sample-sphere angular orientation. The analysis shows that the recent proposal for atomic resolution magnetic resonance imaging of discrete periodic crystal lattice planes using ferromagnetic probes can also be extended to two-dimensional imaging of non-crystalline samples with resolution ranging from micrometer to Angstrom scales.Comment: 9 pages, 11 figure

Development of a Sandwich ELISA to Measure Exposure to Occupational Cow Hair Allergens

Background: Cow hair and dander are important inducers of occupational allergies in cattle-exposed farmers. To estimate allergen exposure in farming environments, a sensitive enzyme immunoassay was developed to measure cow hair allergens. Methods: A sandwich ELISA was developed using polyclonal rabbit antibodies against a mixture of hair extracts from different cattle breeds. To assess the specificity of the assay, extracts from other mammalian epithelia, mites, molds and grains were tested. To validate the new assay, cow hair allergens were measured in passive airborne dust samples from the stables and homes of farmers. Dust was collected with electrostatic dust fall collectors (EDCs). Results: The sandwich ELISA was found to be very sensitive (detection limit: 0.1 ng/ml) and highly reproducible, demonstrating intra-and interassay coefficients of variation of 4 and 10%, respectively. The assay showed no reactivity with mites, molds and grains, but some cross-reactivity with other mammalian epithelia, with the strongest reaction with goat. Using EDCs for dust sampling, high concentrations of bovine allergens were measured in cow stables (4,760-559,400 mu g/m(2)). In addition, bovine allergens were detected in all areas of cattle farmer dwellings. A large variation was found between individual samples (0.3-900 mu g/m(2)) and significantly higher values were discovered in changing rooms. Conclusion: The ELISA developed for the detection of cow hair proteins is a useful tool for allergen quantification in occupational and home environments. Based on its low detection limit, this test is sensitive enough to detect allergens in passive airborne dust. Copyright (C) 2011 S. Karger AG, Base

Present and Future Experiments with Stored Exotic Nuclei at Relativistic Energies

Recent progress is presented from experiments on masses and lifetimes of bare and few-electron exotic nuclei at GSI.Comment: Proceedings of International Conference on "Frontiers in Nuclear Structure, Astrophysics and Reactions", Kos, Greece, September 12-17, 200

Trkalian fields: ray transforms and mini-twistors

We study X-ray and Divergent beam transforms of Trkalian fields and their relation with Radon transform. We make use of four basic mathematical methods of tomography due to Grangeat, Smith, Tuy and Gelfand-Goncharov for an integral geometric view on them. We also make use of direct approaches which provide a faster but restricted view of the geometry of these transforms. These reduce to well known geometric integral transforms on a sphere of the Radon or the spherical Curl transform in Moses eigenbasis, which are members of an analytic family of integral operators. We also discuss their inversion. The X-ray (also Divergent beam) transform of a Trkalian field is Trkalian. Also the Trkalian subclass of X-ray transforms yields Trkalian fields in the physical space. The Riesz potential of a Trkalian field is proportional to the field. Hence, the spherical mean of the X-ray (also Divergent beam) transform of a Trkalian field over all lines passing through a point yields the field at this point. The pivotal point is the simplification of an intricate quantity: Hilbert transform of the derivative of Radon transform for a Trkalian field in the Moses basis. We also define the X-ray transform of the Riesz potential (of order 2) and Biot-Savart integrals. Then, we discuss a mini-twistor respresentation, presenting a mini-twistor solution for the Trkalian fields equation. This is based on a time-harmonic reduction of wave equation to Helmholtz equation. A Trkalian field is given in terms of a null vector in C3 with an arbitrary function and an exponential factor resulting from this reduction.Comment: 37 pages, http://dx.doi.org/10.1063/1.482610

Isospin Dependence in the Odd-Even Staggering of Nuclear Binding Energies

The FRS-ESR facility at GSI provides unique conditions for precision measurements of large areas on the nuclear mass surface in a single experiment. Values for masses of 604 neutron-deficient nuclides (30<=Z<=92) were obtained with a typical uncertainty of 30 microunits. The masses of 114 nuclides were determined for the first time. The odd-even staggering (OES) of nuclear masses was systematically investigated for isotopic chains between the proton shell closures at Z=50 and Z=82. The results were compared with predictions of modern nuclear models. The comparison revealed that the measured trend of OES is not reproduced by the theories fitted to masses only. The spectral pairing gaps extracted from models adjusted to both masses, and density related observables of nuclei agree better with the experimental data.Comment: Physics Review Letters 95 (2005) 042501 http://link.aps.org/abstract/PRL/v95/e04250

The two-proton shell gap in Sn isotopes

We present an analysis of two-proton shell gaps in Sn isotopes. As the theoretical tool we use self-consistent mean-field models, namely the relativistic mean-field model and the Skyrme-Hartree-Fock approach, both with two different pairing forces, a delta interaction (DI) model and a density-dependent delta interaction (DDDI). We investigate the influence of nuclear deformation as well as collective correlations and find that both effects contribute significantly. Moreover, we find a further significant dependence on the pairing force used. The inclusion of deformation plus correlation effects and the use of DDDI pairing provides agreement with the data.Comment: gzipped tar archiv containing LaTeX source, bibliography file (*.bbl), all figures as *.eps, and the style file

Fermiology via the electron momentum distribution

Investigations of the Fermi surface via the electron momentum distribution reconstructed from either angular correlation of annihilation radiation (or Compton scattering) experimental spectra are presented. The basis of these experiments and mathematical methods applied in reconstructing three-dimensional densities from line (or plane) projections measured in these experiments are described. The review of papers where such techniques have been applied to study the Fermi surface of metallic materials with showing their main results is also done.Comment: 22 pages, 9 Figures, 4 Table

Accurate ab initio spin densities

We present an approach for the calculation of spin density distributions for molecules that require very large active spaces for a qualitatively correct description of their electronic structure. Our approach is based on the density-matrix renormalization group (DMRG) algorithm to calculate the spin density matrix elements as basic quantity for the spatially resolved spin density distribution. The spin density matrix elements are directly determined from the second-quantized elementary operators optimized by the DMRG algorithm. As an analytic convergence criterion for the spin density distribution, we employ our recently developed sampling-reconstruction scheme [J. Chem. Phys. 2011, 134, 224101] to build an accurate complete-active-space configuration-interaction (CASCI) wave function from the optimized matrix product states. The spin density matrix elements can then also be determined as an expectation value employing the reconstructed wave function expansion. Furthermore, the explicit reconstruction of a CASCI-type wave function provides insights into chemically interesting features of the molecule under study such as the distribution of $\alpha$- and $\beta$-electrons in terms of Slater determinants, CI coefficients, and natural orbitals. The methodology is applied to an iron nitrosyl complex which we have identified as a challenging system for standard approaches [J. Chem. Theory Comput. 2011, 7, 2740].Comment: 37 pages, 13 figure

3D Coronal Density Reconstruction and Retrieving the Magnetic Field Structure during Solar Minimum

Measurement of the coronal magnetic field is a crucial ingredient in understanding the nature of solar coronal phenomena at all scales. We employed STEREO/COR1 data obtained during a deep minimum of solar activity in February 2008 (Carrington rotation CR 2066) to retrieve and analyze the three-dimensional (3D) coronal electron density in the range of heights from 1.5 to 4 Rsun using a tomography method. With this, we qualitatively deduced structures of the coronal magnetic field. The 3D electron density analysis is complemented by the 3D STEREO/EUVI emissivity in the 195 A band obtained by tomography for the same CR. A global 3D MHD model of the solar corona was used to relate the reconstructed 3D density and emissivity to open/closed magnetic field structures. We show that the density maximum locations can serve as an indicator of current sheet position, while the locations of the density gradient maximum can be a reliable indicator of coronal hole boundaries. We find that the magnetic field configuration during CR 2066 has a tendency to become radially open at heliocentric distances greater than 2.5 Rsun. We also find that the potential field model with a fixed source surface (PFSS) is inconsistent with the boundaries between the regions with open and closed magnetic field structures. This indicates that the assumption of the potential nature of the coronal global magnetic field is not satisfied even during the deep solar minimum. Results of our 3D density reconstruction will help to constrain solar coronal field models and test the accuracy of the magnetic field approximations for coronal modeling.Comment: Published in "Solar Physics