Event Indexing Systems for Efficient Selection and Analysis of HERA Data

The design and implementation of two software systems introduced to improve the efficiency of offline analysis of event data taken with the ZEUS Detector at the HERA electron-proton collider at DESY are presented. Two different approaches were made, one using a set of event directories and the other using a tag database based on a commercial object-oriented database management system. These are described and compared. Both systems provide quick direct access to individual collision events in a sequential data store of several terabytes, and they both considerably improve the event analysis efficiency. In particular the tag database provides a very flexible selection mechanism and can dramatically reduce the computing time needed to extract small subsamples from the total event sample. Gains as large as a factor 20 have been obtained.Comment: Accepted for publication in Computer Physics Communication

Discovery of a Hot Symbiotic Star in the Cold Antarctic Sky: Symbiotics Are Outliers in SkyMapper uvgriz Photometry

Using near-ultraviolet flux excess and variability from the SkyMapper Southern Sky Survey11 as novel diagnostics to search for symbiotic stars?cool giants accreting onto compact objects, typically white dwarfs (WDs), we report that Hen 3-1768 (≡ASAS J195948?8252.7) is a symbiotic star. It may be an optimal target for continuous monitoring by Antarctic telescopes; at a decl. of −82877, it is now the closest known symbiotic to either geographic pole, and the only known symbiotic more southern than the Small Magellanic Cloud (Belczyński et al. 2000; Akras et al. 2019, ApJS, in press). Figure 1 shows that Hen 3-1768 produced unambiguous emission from Raman O vi 6830,7088 Å, He ii 4686 Å, and other transitions, proving that it is a symbiotic star (e.g., Shore et al. 2014). Comparing to Pickles (1998) template spectra, we preliminarily constrained the giant donor´s spectral type to between K4 and K7, making Hen 3-1768 one of the dozen or so yellow symbiotics with stellar-type infrared (IR) colors currently known (e.g., Baella et al. 2016). The 2MASS IR colors (J − H)0 = 0.82 and (H − Ks)0 = 0.21 (Skrutskie et al. 2006; de-reddened by total Galactic extinction12 ) are consistent with this conclusion (see Figure 1 in Baella et al. 2016).Fil: Lucy, Adrian B.. Columbia University; Estados UnidosFil: Sokoloski, J. L.. Columbia University; Estados UnidosFil: Nuñez, Natalia Edith. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - San Juan. Instituto de Ciencias Astronómicas, de la Tierra y del Espacio. Universidad Nacional de San Juan. Instituto de Ciencias Astronómicas, de la Tierra y del Espacio; ArgentinaFil: Wolf, C.. Research School Of Astronomy And Astrophysics, Anu; AustraliaFil: Bohlsen, T.. Mirranook Observatory,; AustraliaFil: Luna, Gerardo Juan Manuel. Consejo Nacional de Investigaciónes Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Astronomía y Física del Espacio. - Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Astronomía y Física del Espacio; Argentin

Lookup tables to compute high energy cosmic ray induced atmospheric ionization and changes in atmospheric chemistry

A variety of events such as gamma-ray bursts and supernovae may expose the Earth to an increased flux of high-energy cosmic rays, with potentially important effects on the biosphere. Existing atmospheric chemistry software does not have the capability of incorporating the effects of substantial cosmic ray flux above 10 GeV . An atmospheric code, the NASA-Goddard Space Flight Center two-dimensional (latitude, altitude) time-dependent atmospheric model (NGSFC), is used to study atmospheric chemistry changes. Using CORSIKA, we have created tables that can be used to compute high energy cosmic ray (10 GeV - 1 PeV) induced atmospheric ionization and also, with the use of the NGSFC code, can be used to simulate the resulting atmospheric chemistry changes. We discuss the tables, their uses, weaknesses, and strengths.Comment: In press: Journal of Cosmology and Astroparticle Physics. 6 figures, 3 tables, two associated data files. Major revisions, including results of a greatly expanded computation, clarification and updated references. In the future we will expand the table to at least EeV levels

Heterologous biosynthesis, modifications and structural characterization of ruminococcin-A, a lanthipeptide from the gut bacterium ruminococcus gnavus E1, in escherichia coli

Ruminococcin A (RumA) is a lanthipeptide with high activity against pathogenic clostridia and is naturally produced by the strict anaerobic bacterium Ruminococcus gnavus E1, isolated from human intestine. Cultivating R. gnavus E1 is challenging, limiting high-quality production, further biotechnological development and therapeutic exploitation of RumA. To supply an alternative production system, the gene encoding RumA-modifying enzyme (RumM) and the gene encoding the unmodified precursor peptide (preRumA) were amplified from the chromosome of R. gnavus E1 and coexpressed in Escherichia coli. Our results show that the ruminococcin-A lanthionine synthetase RumM catalysed dehydration of threonine and serine residues and subsequently installed thioether bridges into the core structure of a mutant version of preRumA (preRumA*). These modifications were achieved when the peptide was expressed as a fusion protein together with GFP, demonstrating that a larger attachment to the N-terminus of the leader peptide does not obstruct in vivo processivity of RumM in modifying the core peptide. The leader peptide serves as a docking sequence which the modifying enzyme recognizes and interacts with, enabling its catalytic role. We further investigated RumM catalysis in conjunction with the formation of complexes observed between RumM and the chimeric GFP fusion protein. Results obtained suggested some insights into the catalytic mechanisms of class II lanthipeptide synthetases. Our data further indicated the presence of three thioether bridges, contradicting a previous report whose findings ruled out the possibility of forming a third ring in RumA. Modified preRumA* was activated in vitro by removing the leader peptide using trypsin and biological activity was achieved against Bacillus subtilis ATCC 6633. A production yield of 6 mg of pure modified preRumA* per litre of E. coli culture was attained and considering the size ratio of the leader-to-core segments of preRumA*, this amount would generate a final yield of approximately 1-2 mg of active RumA when the leader peptide is removed. The yield of our system exceeds that attainable in the natural producer by several thousand-fold. The system developed herein supplies useful tools for product optimization and for performing in vivo peptide engineering to generate new analogues with superior anti-infective properties.DFG, 325093850, Open Access Publizieren 2017 - 2018 / Technische Universität Berli

The influence of structure and surface chemistry of carbon materials on the decomposition of hydrogen peroxide

Carbon materials with different structural and chemical properties, namely activated carbons, carbon xerogels, carbon nanotubes, graphene oxide, graphite and glycerol-based carbon materials, were tested under different operating conditions for their ability to catalyse hydrogen peroxide (H2O2) decomposition in aqueous solutions. Activated carbons treated with concentrated sulphuric acid (ACS) are the most active catalytic materials for H2O2 decomposition in most of the conditions studied, due to the presence of sulphur containing functional groups at their surface. In addition, ACS proved to be a stable catalyst in reutilization tests for H2O2 decomposition. Methanol was used as selective scavenger of hydroxyl radicals (HO center dot), to show that activated carbons with a markedly basic character lead to the highest yield of HO center dot formed during the H2O2 decomposition process (14%, after 150 min of reaction). Overall, from the mechanistic interpretation of H2O2 decomposition, it is concluded that the presence of sulphur containing functional groups at the surface of the activated carbons improves the removal of H2O2 in aqueous solutions, but, on the other hand, the selective decomposition of H2O2 via HO center dot formation is enhanced by the presence of basic active sites on the Carbon surface

Strigolactone biosynthesis is evolutionarily conserved, regulated by phosphate starvation and contributes to resistance against phytopathogenic fungi in a moss, Physcomitrella patens

In seed plants, strigolactones (SLs) regulate architecture and induce mycorrhizal symbiosis in response to environmental cues. SLs are formed by combined activity of the carotenoid cleavage dioxygenases (CCDs) 7 and 8 from 9-cis-β-carotene, leading to carlactone that is converted by cytochromes P450 (clade 711; MAX1 in Arabidopsis) into various SLs. As Physcomitrella patens possesses CCD7 and CCD8 homologs but lacks MAX1, we investigated if PpCCD7 together with PpCCD8 form carlactone and how deletion of these enzymes influences growth and interactions with the environment. We investigated the enzymatic activity of PpCCD7 and PpCCD8 in vitro, identified the formed products by high performance liquid chromatography (HPLC) and LC-MS, and generated and analysed ΔCCD7 and ΔCCD8 mutants. We defined enzymatic activity of PpCCD7 as a stereospecific 9-cis-CCD and PpCCD8 as a carlactone synthase. ΔCCD7 and ΔCCD8 lines showed enhanced caulonema growth, which was revertible by adding the SL analogue GR24 or carlactone. Wild-type (WT) exudates induced seed germination in Orobanche ramosa. This activity was increased upon phosphate starvation and abolished in exudates of both mutants. Furthermore, both mutants showed increased susceptibility to phytopathogenic fungi. Our study reveals the deep evolutionary conservation of SL biosynthesis, SL function, and its regulation by biotic and abiotic cues.Deutsche Forschungsgemeinschaft AL892/1-4Academy of Finland 125312

Optical Constants of Mars Candidate Materials used to Model Laboratory Reflectance Spectra of Mixtures

Data obtained at visible and nearinfrared wavelengths by OMEGA on MarsExpress and CRISM on MRO provide definitive evidence for the presence of phyllosilicates and other hydrated phases on Mars. A diverse range of both Fe/Mg-OH and Al- OH-bearing phyllosilicates were identified including the smectites nontronite, saponite, and montmorillonite. To constrain the abundances of these phyllosilicates, spectral analyses of mixtures are needed. We report on our effort to enable the quantitative evaluation of the abundance of hydrated-hydroxylated silicates when they are contained in mixtures. Here we focus on two component mixtures of the hydrated/ hydroxylated silicates, saponite and montmorillonite (Mg- and Al-rich smectites) with each other and with two analogs for other Martian materials; pyroxene (enstatite) and palagonitic soil (an alteration product of basaltic glass, hereafter referred to as palagonite). We prepared three size separates of each end-member for study: 20-45, 63-90, and 125-150 micron. Here we focus upon mixtures of the 63-90 m size fractions

Stripes Induced by Orbital Ordering in Layered Manganites

Spin-charge-orbital ordered structures in doped layered manganites are investigated using an orbital-degenerate double-exchange model tightly coupled to Jahn-Teller distortions. In the ferromagnetic phase, unexpected diagonal stripes at $x$=$1/m$ ($m$=integer) are observed, as in recent experiments. These stripes are induced by the orbital degree of freedom, which forms a staggered pattern in the background. A $\pi$-shift in the orbital order across stripes is identified, analogous to the $\pi$-shift in spin order across stripes in cuprates. At $x$=1/4 and 1/3, another non-magnetic phase with diagonal static charge stripes is stabilized at intermediate values of the $t_{\rm 2g}$-spins exchange coupling.Comment: reordering of figure