Multiplex SNP typing by bioluminometric assay coupled with terminator incorporation (BATI)

A multiplex single-nucleotide polymorphism (SNP) typing platform using ‘bioluminometric assay coupled with terminator [2′,3′-dideoxynucleoside triphosphates (ddNTPs)] incorporation’ (named ‘BATI’ for short) was developed. All of the reactions are carried out in a single reaction chamber containing target DNAs, DNA polymerase, reagents necessary for converting PPi into ATP and reagents for luciferase reaction. Each of the four ddNTPs is dispensed into the reaction chamber in turn. PPi is released by a nucleotide incorporation reaction and is used to produce ATP when the ddNTP dispensed is complementary to the base in a template. The ATP is used in a luciferase reaction to release visible light. Only 1 nt is incorporated into a template at a time because ddNTPs do not have a 3′ hydroxyl group. This feature greatly simplifies a sequencing spectrum. The luminescence is proportional to the amount of template incorporated. Only one peak appears in the spectrum of a homozygote sample, and two peaks at the same intensity appear for a heterozygote sample. In comparison with pyrosequencing using dNTP, the spectrum obtained by BATI is very simple, and it is very easy to determine SNPs accurately from it. As only one base is extended at a time and the extension signals are quantitative, the observed spectrum pattern is uniquely determined even for a sample containing multiplex SNPs. We have successfully used BATI to type various samples containing plural target sequence areas. The measurements can be carried out with an inexpensive and small luminometer using a photodiode array as the detector. It takes only a few minutes to determine multiplex SNPs. These results indicate that this novel multiplexed approach can significantly decrease the cost of SNP typing and increase the typing throughput with an inexpensive and small luminometer

Rtp1p Is a Karyopherin-Like Protein Required for RNA Polymerase II Biogenesis

The assembly and nuclear transport of RNA polymerase II (RNA pol II) are processes that require the participation of many auxiliary factors. In a yeast genetic screen, we identified a previously uncharacterized gene, YMR185w (renamed RTP1), which encodes a protein required for the nuclear import of RNA pol II. Using protein affinity purification coupled to mass spectrometry, we identified interactions between Rtp1p and members of the R2TP complex. Rtp1p also interacts, to a different extent, with several RNA pol II subunits. The pattern of interactions is compatible with a role for Rtp1p as an assembly factor that participates in the formation of the Rpb2/Rpb3 subassembly complex and its binding to the Rpb1p-containing subcomplex. Besides, Rtp1p has a molecular architecture characteristic of karyopherins, composed of HEAT repeats, and is able to interact with phenylalanine-glycine-containing nucleoporins. Our results define Rtp1p as a new component of the RNA pol II biogenesis machinery that plays roles in subunit assembly and likely in transport through the nuclear pore complex

Sparse, decorrelated odor coding in the mushroom body enhances learned odor discrimination

Sparse coding may be a general strategy of neural systems for augmenting memory capacity. In Drosophila melanogaster, sparse odor coding by the Kenyon cells of the mushroom body is thought to generate a large number of precisely addressable locations for the storage of odor-specific memories. However, it remains untested how sparse coding relates to behavioral performance. Here we demonstrate that sparseness is controlled by a negative feedback circuit between Kenyon cells and the GABAergic anterior paired lateral (APL) neuron. Systematic activation and blockade of each leg of this feedback circuit showed that Kenyon cells activated APL and APL inhibited Kenyon cells. Disrupting the Kenyon cell–APL feedback loop decreased the sparseness of Kenyon cell odor responses, increased inter-odor correlations and prevented flies from learning to discriminate similar, but not dissimilar, odors. These results suggest that feedback inhibition suppresses Kenyon cell activity to maintain sparse, decorrelated odor coding and thus the odor specificity of memories

Does General Parenting Context Modify Adolescents' Appraisals and Coping with a Situation of Parental Regulation? The Case of Autonomy-Supportive Parenting

Theory and research suggest that adolescents differ in their appraisals and coping reactions in response to parental regulation. Less is known, however, about factors that determine these differences in adolescents’ responses. In this study, we examined whether adolescents' appraisals and coping reactions depend upon parents’ situation-specific autonomy-supportive or controlling communication style (i.e., the situation) in interaction with adolescents’ past experiences with general autonomy-supportive parenting (i.e., the parenting context). Whereas in Study 1 (N = 176) adolescents’ perceived general autonomy-supportive parenting context was assessed at one point in time, in Study 2 (N = 126) it was assessed multiple times across a 6-year period, allowing for an estimation of trajectories of perceived autonomy-supportive parenting context. In each study, adolescents read a vignette-based scenario depicting a situation of maternal regulation (i.e., a request to study more), which was communicated in either an autonomy-supportive or a controlling way. Following this scenario, they reported upon their appraisals and their anticipated coping reactions. Results of each study indicated that both the autonomy-supportive (relative to the controlling) situation and the perceived autonomy-supportive parenting context generally related to more positive appraisals (i.e., more autonomy need satisfaction, less autonomy need frustration), as well as to more constructive coping responses (i.e., less oppositional defiance and submission, more negotiation and accommodation). In addition, situation × context interactions were found, whereby adolescents growing up in a more autonomy-supportive context seemed to derive greater benefits from the exposure to an autonomy-supportive situation and reacted more constructively to a controlling situation

<Session 6: Wildlife Tracking II>Application of ultrasonic telemetry system for monitoring depth of trolling gear

19–22 May 2022 Kyoto, JapanCutlass fish (Trichiurus lepturus) is fished with trolling in the west of Japan. In that fishing, because the trolling depth affects the catch, the fishing gear has to be positioned at the depth of fish school accurately. Normally, fishermen estimate the gear depth from the length of reeling the sinker from the bottom by a spool. However, if the sea state gets worse and/or if the fishing is operated in a deeper fishing place, it becomes difficult to make the adjustment of the gear depth and fatiguing the fishermen. In order to reduce the workload and make it easy to adjust the gear depth, we applied ultrasonic telemetry system to the trolling gear as a system for monitoring depth in real-time. The system is consisted of a pinger and a receiving system with an omni-directional wired hydrophone and a display of the pinger's depth. The pinger's battery is easily-exchangeable to use it repetitively. The system was tested by experiments in actual fishing operations and could show the gear depth every few seconds. Therefore, without letting the sinker touch the bottom, it is possible to obtain the accurate gear depth. In addition, it was possible to easily handle the system by fishermen themselves. From this study, it is expected that our system can reduce the workload

O cultivo de yacon no Brasil

O yacon (Polymnia sonchifolia Poep. Endl.) é uma espécie da família Asteraceae que apresenta um complexo sistema subterrâneo. Suas raízes tuberosas e rizóforos contêm grandes quantidades de frutose e glicose livres, além de fruto-oligossacarídeos do tipo inulina como carboidrato de reserva. Vem despertando interesse principalmente por suas propriedades medicinais, sendo utilizado como auxiliar no tratamento contra diabetes e colesterol. Foi introduzido no Brasil por volta de 1989, porém somente em 1994 iniciaram-se os primeiros cultivos comerciais. Atualmente é cultivado na região de Capão Bonito (SP), a partir de rizóforos pesando de 60 a 80 g. Estes são plantados em canteiros de 0,30 - 0,40 m de altura por 1,0 m de base, em um espaçamento de 1,00 x 0,90 m. O pH do solo é ajustado para 6,0 e a fertilização básica é realizada com NPK + Zn, de acordo com análise e a recomendação utilizada para batata doce. Posteriormente são aplicados 40 kg.ha-1 de N em duas parcelas. A irrigação é feita por aspersão e a colheita realizada entre os 8 e 10 meses após o plantio, obtendo-se um rendimento médio de 80 t.ha-1 de raízes e 1 t.ha-1 de folhas desidratadas. Tanto as raízes como as folhas podem ser consumidas frescas ou desidratadas em estufas com ventilação forçada, à temperatura máxima de 50°C, para se evitar a degradação dos carboidratos de reserva e das substâncias do metabolismo secundário.Yacon (Polymnia sonchifolia Poep End.) is a species from the Asteraceae family which presents a complex subterraneous system. Its tuberous roots and rhizophores contain great amounts of free fructose and glucose, besides inulin type fructo-oligosaccharides as reserve carbohydrates. It has raised interest mainly for its medicinal properties, being used as an auxiliary in the treatment against diabetes and cholesterol. It was introduced in Brazil around 1989, but only in 1994 the first commercial cultivation started. It is presently cultivated in the Capão Bonito region, São Paulo State, from rhizophores weighing from 60 to 80 g. These are planted in beds 0.30 - 0.40 m high, 1.0 m wide, in a 1.0 x 0.90 m interspace. Soil pH is adjusted to 6.0 and the basic fertilization is made with NPK + Zn according to soil analysis and to some recommendation for sweet-potatoes. Later on, 40 kg.ha-1 of N are added, divided in two applications. Irrigation is made by sprinkle irrigation and harvesting happens between the 8th and 10th months after planting, yielding an average of 80 t.ha-1 of tuberous roots and 1 t.ha-1 of fresh leafs. Roots as well as leafs can be freshly consumed or dehydrated in a stove with forced ventilation at 50(0)C maximum temperature to avoid loss of reserve carbohydrates as well as the secondary metabolism substances