New records of bryophytes for Pernambuco State, Brazil

The known geographical distribution of 12 bryophyte species is extended by confirmation of their presence in the state of Pernambuco. Leptoscyphus porphyrius (Nees) Grolle, Harpalejeunea uncinata Steph., Chryso-hypnum diminutivum (Hampe) Buck and Porotrichum korthalsianum (Dozy & Molk.) Mitt. are new to northeastern Brazil. The material studied was collected in remnants of Atlantic Forest situated at altitudes of 100-1.100m. The principal taxonomic characteristics are cited, with ecological and distributional commentary provided.A distribuição geográfica conhecida de 12 espécies de briófitas é ampliada, com o registro de sua ocorrência no estado de Pernambuco. Leptoscyphus porphyrius (Nees) Grolle, Harpalejeunea uncinata Steph., Chryso-hypnum diminutivum (Hampe) Buck e Porotrichum korthalsianum (Dozy & Molk.) Mitt. constituem-se novas referências para a região Nordeste. O material estudado foi coletado em remanescentes da Floresta Atlântica, situados de 100 a 1.100m de altitude. Faz-se referência às principais características taxonômicas do material, bem como, breves comentários ecológicos e de distribuição geográfica

The double role of pigmentation and convolute leaves in community assemblage of Amazonian epiphytic Lejeuneaceae

Background Epiphytic bryophyte communities in the Amazon forest show a vertical gradient in species composition along the trunk of the host trees. The investigation of species traits related to this pattern has focused on the physiology of selected taxa with a clear preference for one of the extremes of the gradient. Although some species are indeed only found on the tree base or in the outer canopy, the vertical gradient is composed mainly by the variation in the abundances of species with a broader occurrence along the height zones. Therefore, this study approaches the differences among community assemblages, rather than among species, to test the role of morphological and dispersal traits on the establishment of the vertical gradient in species composition. Methods A character state matrix was built for 104 species of the family Lejeuneaceae recorded as epiphytes in the Amazonian terra firme forests, and six binary traits supposed to influence species occurrence: dark pigmentation on leaves; ability to convolute leaves when drying; possession of thickened cell walls; reproduction mode (monoicous or dioicous); occurrence of asexual reproduction; and facultative epiphyllous habit. Based on a previous dataset on community composition along the vertical gradient, trait occurrences in random draws of the metacommunity was compared to trait occurrences in field data, in order to detect significant deviations in the different height zones. Results Four out of the six traits tested showed significantly higher or lower occurrence in the species composition of canopy and/or understory communities. Traits related to high dispersal ability did not vary much along the vertical gradient; although facultative epiphylls were overrepresented on tree base. Dark pigmentation and convolute leaves were significantly more frequent in the canopy communities, but also significantly less frequent in communities at the base of the tree. Discussion Dark pigmentation and convolute leaves seem to be advantageous for the establishment in the canopy zones. They may, respectively, prevent light damage and allow longer periods of photosynthesis. Interestingly, these traits occur randomly along the trunk, but are wiped out of communities on the tree base. In the relatively deep shade of the first meters of the understory, they possibly hamper net carbon gain, the first by darkening the leaf surface and the second by delaying desiccation—which can be damaging under high temperatures and low light. The fact that production of asexual propagules is not overrepresented in the most dynamic microenvironment along the gradient, the canopy, challenges current views of bryophyte life strategy theory

The flora phenotype ontology (FLOPO):tool for integrating morphological traits and phenotypes of vascular plants

Background: The systematic analysis of a large number of comparable plant trait data can support investigations into phylogenetics and ecological adaptation, with broad applications in evolutionary biology, agriculture, conservation, and the functioning of ecosystems. Floras, i.e., books collecting the information on all known plant species found within a region, are a potentially rich source of such plant trait data. Floras describe plant traits with a focus on morphology and other traits relevant for species identification in addition to other characteristics of plant species, such as ecological affinities, distribution, economic value, health applications, traditional uses, and so on. However, a key limitation in systematically analyzing information in Floras is the lack of a standardized vocabulary for the described traits as well as the difficulties in extracting structured information from free text. Results: We have developed the Flora Phenotype Ontology (FLOPO), an ontology for describing traits of plant species found in Floras. We used the Plant Ontology (PO) and the Phenotype And Trait Ontology (PATO) to extract entity-quality relationships from digitized taxon descriptions in Floras, and used a formal ontological approach based on phenotype description patterns and automated reasoning to generate the FLOPO. The resulting ontology consists of 25,407 classes and is based on the PO and PATO. The classified ontology closely follows the structure of Plant Ontology in that the primary axis of classification is the observed plant anatomical structure, and more specific traits are then classified based on parthood and subclass relations between anatomical structures as well as subclass relations between phenotypic qualities. Conclusions: The FLOPO is primarily intended as a framework based on which plant traits can be integrated computationally across all species and higher taxa of flowering plants. Importantly, it is not intended to replace established vocabularies or ontologies, but rather serve as an overarching framework based on which different application- and domain-specific ontologies, thesauri and vocabularies of phenotypes observed in flowering plants can be integrated

Vertical distribution of epiphytic bryophytes in Atlantic Forest fragments in northeastern Brazil

ABSTRACT The microclimatic gradient established from the forest understory to the canopy provides a range of different conditions for the establishment of bryophytes along the height of a tree. We investigated epiphytic bryophyte communities of four fragments of Atlantic Forest with the aim of describing their vertical zonation and assessing differentiation among the communities of the different fragments. In each fragment, five host trees were selected from which bryophyte samples were collected in four height zones from the base to the canopy. Furthermore, 10 plots were demarcated in each fragment where bryophytes were collected from the understory. In total, 114 bryophyte species were found on the 20 sampled phorophytes, plus an additional 51 species in the understory, for a total of 165 species. Species composition of height zones differed significantly between communities of the trunk base and the canopy. The samples from the understory included 77% of all species. Among all species found, 10 showed a significant preference for a specific height. Around 70% of the bryophyte species grew as mats; this life form occurred in all trees and height zones. The results showed a weak, yet significant, vertical gradient, which differs from what is usually found in the Atlantic Forest

Floristic overview of the epiphytic bryophytes of terra firme forests across the Amazon basin

Epiphytic bryophyte communities in terra firme forests of the Amazon region were investigated for the first time through standardized sampling across the Amazon basin. The sampling was carried out at nine localities, where bryophytes were collected in five height zones, from the forest floor to the canopy of eight canopy trees per locality. The sampling generated 3104 records, identifying 222 species and 39 morphospecies, within 29 families. The most common families were Lejeuneaceae (in 55%), Calymperaceae (in 8%), Leucobryaceae (in 4%) and Sematophyllaceae (in 4%). Richness and species composition did not show any geographical gradient. The bryoflora was significantly richer in the localities of Saül, in French Guiana, and Tiputini, in Ecuador, than in the other localities, probably due to differences in local climatic conditions. Among the 155 species recorded for more than one locality, 57 were classified as specialists. A total of 29 species (among which 3 were unidentified) were sampled only in the canopy, which reinforces the importance of canopy sampling for the study of epiphytic bryophytes in the Amazon

Vertical distribution and diversity of epiphytic bryophytes in the Colombian Amazon

Introduction. The purpose of this study was to analyse the variation in the vertical and spatial distribution of epiphytic bryophytes across four forests in the north-western Amazon. We sampled along the entire vertical gradient from tree base to upper canopy in order to answer these questions: Is there vertical zonation? Is there a relationship between composition species and geographical distance? Methods. The vertical gradient was studied in 64 phorophytes, and each phorophyte was divided into six height zones. We used Detrended Corresponded Analysis for plot ordination and Permutation Multivariate Analysis of Variance to analyse variation in species composition. The relationship between species composition and geographic distance was evaluated using a Mantel Test. We used Indicator species analysis to determine the preference of the species for each of the six height zones, and an ANOVA analysis to evaluate the significance of species richness per zone. Key results. There was a gradual differentiation of the bryophyte communities across the tree height zones. We identified 63 indicator species; the tree base had the highest number of indicator species, followed by the outer canopy. Conclusions. The strong influence of height zones on species assemblages revealed the importance of the environmental differences across the vertical gradient within a single tree. Epiphytic bryophyte communities are mainly structured according to the height zone of trees. The presence of a high percentage of indicator species across the Colombian Amazon is evidence to further support a high specificity of species for a particular microhabitat within the forest