Nature of Fast Relaxation Processes and Spectroscopy of a Membrane-Active Peptide Modified with Fluorescent Amino Acid Exhibiting Excited State Intramolecular Proton Transfer and Efficient Stimulated Emission

A fluorescently labeled peptide that exhibited fast excited state intramolecular proton transfer (ESIPT) was synthesized, and the nature of its electronic properties was comprehensively investigated, including linear photophysical and photochemical characterization, specific relaxation processes in the excited state, and its stimulated emission ability. The steady-state absorption, fluorescence, and excitation anisotropy spectra, along with fluorescence lifetimes and emission quantum yields, were obtained in liquid media and analyzed based on density functional theory quantum-chemical calculations. The nature of ESIPT processes of the peptide’s chromophore moiety was explored using a femtosecond transient absorption pump-probe technique, revealing relatively fast ESIPT velocity (∼10 ps) in protic MeOH at room temperature. Efficient superluminescence properties of the peptide were realized upon femtosecond excitation in the main long-wavelength absorption band with a corresponding threshold of the pump pulse energy of ∼1.5 μJ. Quantum-chemical analysis of the electronic structure of the peptide was performed using the density functional theory/time-dependent density functional theory level of theory, affording good agreement with experimental data

Functionalized Double Strain-Promoted Stapled Peptides for Inhibiting the p53-MDM2 Interaction.

The Sondheimer dialkyne reagent has previously been employed in strain-promoted double-click cycloadditions with bis-azide peptides to generate stapled peptide inhibitors of protein-protein interactions. The substituted variants of the Sondheimer dialkyne can be used to generate functionalized stapled peptide inhibitors with improved biological properties; however, this remains a relatively underdeveloped field. Herein, we report the synthesis of new substituted variants of Sondheimer dialkyne and their application in the stapling of p53-based diazido peptides to generate potent stapled peptide-based inhibitors of the oncogenic p53-MDM2 interaction. The functionalized stapled peptide formed from a meta-fluoro-substituted Sondheimer dialkyne was found to be the most potent inhibitor. Furthermore, through experimental studies and density functional theory calculations, we investigated the impact of the substituent on the strain-promoted double-click reactivity of Sondheimer dialkyne

In Vivo Behavior of the Antibacterial Peptide Cyclo[RRRWFW], Explored Using a 3-Hydroxychromone-Derived Fluorescent Amino Acid

Labeling biomolecules with fluorescent labels is an established tool for structural, biochemical, and biophysical studies; however, it remains underused for small peptides. In this work, an amino acid bearing a 3-hydroxychromone fluorophore, 2-amino-3-(2-(furan-2-yl)-3-hydroxy-4-oxo-4H-chromen-6-yl)propanoic acid (FHC), was incorporated in a known hexameric antimicrobial peptide, cyclo[RRRWFW] (cWFW), in place of aromatic residues. Circular dichroism spectropolarimetry and antibacterial activity measurements demonstrated that the FHC residue perturbs the peptide structure depending on labeling position but does not modify the activity of cWFW significantly. FHC thus can be considered an adequate label for studies of the parent peptide. Several analytical and imaging techniques were used to establish the activity of the obtained labeled cWFW analogues toward animal cells and to study the behavior of the peptides in a multicellular organism. The 3-hydroxychromone fluorophore can undergo excited-state intramolecular proton transfer (ESIPT), resulting in double-band emission from its two tautomeric forms. This feature allowed us to get insights into conformational equilibria of the labeled peptides, localize the cWFW analogues in human cells (HeLa and HEK293) and zebrafish embryos, and assess the polarity of the local environment around the label by confocal fluorescence microscopy. We found that the labeled peptides efficiently penetrated cancerous cells and localized mainly in lipid-containing and/or other nonpolar subcellular compartments. In the zebrafish embryo, the peptides remained in the bloodstream upon injection into the cardinal vein, presumably adhering to lipoproteins and/or microvesicles. They did not diffuse into any tissue to a significant extent during the first 3 h after administration. This study demonstrated the utility of fluorescent labeling by double-emission labels to evaluate biologically active peptides as potential drug candidates in vivo

Water-soluble, stable and azide-reactive strained dialkynes for biocompatible double strain-promoted click chemistry.

The Sondheimer dialkyne is extensively used in double strain-promoted azide-alkyne cycloadditions. This reagent suffers with poor water-solubility and rapidly decomposes in aqueous solutions. This intrinsically limits its application in biological systems, and no effective solutions are currently available. Herein, we report the development of novel highly water-soluble, stable, and azide-reactive strained dialkyne reagents. To demonstrate their extensive utility, we applied our novel dialkynes to a double strain-promoted macrocyclisation strategy to generate functionalised p53-based stapled peptides for inhibiting the oncogenic p53-MDM2 interaction. These functionalised stapled peptides bind MDM2 with low nanomolar affinity and show p53 activation in a cellular environment. Overall, our highly soluble, stable and azide-reactive dialkynes offer significant advantages over the currently used Sondheimer dialkyne, and could be utilised for numerous biological applications

Highly reactive bis-cyclooctyne-modified diarylethene for SPAAC-mediated cross-linking.

Photoisomerizable diarylethenes equipped with triple bonds are promising building blocks for constructing bistable photocontrollable systems. Here we report on the design, synthesis and application of a cross-linking reagent which is based on a diarylethene core and features two strained cyclooctynes. High reactivity of the cyclooctyne rings in catalyst-free 1,3-dipolar cycloaddition reactions was suggested to stem from the additional strain imposed by the fused thiophene rings. This hypothesis was confirmed by quantum chemical calculations

Highly reactive bis-cyclooctyne-modified diarylethene for SPAAC-mediated cross-linking

Photoisomerizable diarylethenes equipped with triple bonds are promising building blocks for constructing bistable photocontrollable systems. Here we report on the design, synthesis and application of a cross-linking reagent which is based on a diarylethene core and features two strained cyclooctynes. High reactivity of the cyclooctyne rings in catalyst-free 1,3-dipolar cycloaddition reactions was suggested to stem from the additional strain imposed by the fused thiophene rings. This hypothesis was confirmed by quantum chemical calculation

Spacecraft reflectors thermomechanical analysis

In this article, thermo-mechanical analysis results of the composite reflectors for the use on the geostationary Earth orbit possibility studies are described. The behavior of two different space reflector structures manufactured on composite materials is investigated. The estimates of reflecting surfaces RMS deviations for the two extreme cases orbital inclinations are presented

Computer simulation of vortex combustion processes in fire-tube boilers

The article describes computer simulation of the turbulent methane-air combustion in a fire-tube boiler furnace. Computer simulations performed for variants of once-through fire-tube furnace and reversive flame furnace. Options with various twist parameters of the fuel-air jet were examined. The flame structure has been determined computationally, contours of average speed, temperature and concentrations have been acquired. The results of calculations are presented in graphical form. Dependence of construction characteristics on vortex aerodynamic parameters was estimated. Turbulent combustion of natural gas in the reverse flame of fire-tube boiler was studied by means of the ANSYS Fluent 12.1.4 engineering simulation software

Imidazole-2yl-Phosphonic Acid Derivative Grafted onto Mesoporous Silica Surface as a Novel Highly Effective Sorbent for Uranium(VI) Ion Extraction

A new imidazol-2yl-phosphonic acid/mesoporous silica sorbent (ImP­(O)­(OH)₂/SiO₂) was developed and applied for uranium­(VI) ion removal from aqueous solutions. The synthesized material was characterized by fast kinetics and an extra-high adsorption capacity with respect to uranium. The highest adsorption efficiency of U­(VI) ions was obtained for the reaction system at pH 4 and exceeded 618 mg/g. The uranium­(VI) sorption proceeds quickly in the first step within 60 min of the adsorbent sites and ion interactions. Moreover, the equilibrium time was determined to be 120 min. The equilibrium and kinetic characteristics of the uranium­(VI) ions uptake by synthesized sorbent was found to follow the Langmuir–Freundlich isotherm model and pseudo-second-order kinetics rather than the Langmuir, Dubinin–Radushkevich, and Temkin models and pseudo-first-order or intraparticle diffusion sorption kinetics. The adsorption mechanism for uranium on the sorbent was clarified basing on the X-ray photoelectron spectroscopy (XPS) analysis. The model of UO₂²⁺ binding to surface of the sorbent was proposed according to the results of XPS, i.e., a 1:1 U-to-P ratio in the sorbed complex was established. The regeneration study confirms the ImP­(O)­(OH)₂/SiO₂ sorbent can be reused. A total of 45% of uranium ions was determined as originating from the sorbent leaching in the acidic solutions, whereas when the basic solutions were used, the removal efficiency was 12%