E-Carrel: An Environment for Collaborative Textual Scholarship

The E-Carrel project aims to address the preservation of, access to, and re-uses of humanities electronic text files. It enables dynamic, growing resource projects as repositories for new knowledge. It provides for on-line distributed data and tools that are open to new scholarly enhancement through a user friendly tagging tool, sophisticated use of stand-off markup and annotation (leveraging RDF capabilities), and a browsing system anyone can use. It creates a secure system of text preparation and dissemination that encourages collaboration and participation by anyone interested in the texts. To insure the endurance of authenticated texts, multiple copies are distributed on the Internet. Foundation texts anchor a system for maintaining and growing project usefulness beyond the originators’ interest and the functions they imagined. Increasing access to humanities texts as useful, adaptable, reliable source materials that can be re-purposed will increase interest in continued maintenance, which are critical for long-term preservation and access

Directional Control of Transient Flows Generated by Thermoplasmonic Bubble Nucleation

It has previously been shown that strong flow transients, reaching mm/s flow speeds, are induced when microscopic vapor bubbles nucleate on spatially isolated laser-heated plasmonic nanoantennas supported on a substrate. However, the flow pattern is cylindrically symmetric and always directed toward the nanoantenna at the substrate plane. This limits its applicability in, for example, particle manipulation schemes. Here, we show that the flow direction can be locally reversed by breaking the photothermal symmetry using two nearby nanoantennas that differ either in size or polarization response. The in-plane flow transient is strong enough to push microparticles tens of microns across a surface. Directional flow control may provide the means for rapid and precise mass transport near surfaces for applications in microfluidics, bionanotechnology, and particle sorting

Optical Rotation and Thermometry of Laser Tweezed Silicon Nanorods

Optical rotation of laser tweezed nanoparticles offers a convenient means for optical to mechanical force transduction and sensing at the nanoscale. Plasmonic nanoparticles are the benchmark system for such studies, but their rapid rotation comes at the price of high photoinduced heating due to Ohmic losses. We show that Mie resonant silicon nanorods with characteristic dimensions of ∼220 7 120 nm2 can be optically trapped and rotated at frequencies up to 2 kHz in water using circularly polarized laser light. The temperature excess due to heating from the trapping laser was estimated by phonon Raman scattering and particle rotation analysis. We find that the silicon nanorods exhibit slightly improved thermal characteristics compared to Au nanorods with similar rotation performance and optical resonance anisotropy. Altogether, the results indicate that silicon nanoparticles have the potential to become the system of choice for a wide range of optomechanical applications at the nanoscale

The Object of Platform Studies: Relational Materialities and the Social Platform (the case of the Nintendo Wii)

Racing the Beam: The Atari Video Computer System,by Ian Bogost and Nick Montfort, inaugurated thePlatform Studies series at MIT Press in 2009.We’ve coauthored a new book in the series, Codename: Revolution: the Nintendo Wii Video Game Console. Platform studies is a quintessentially Digital Humanities approach, since it’s explicitly focused on the interrelationship of computing and cultural expression. According to the series preface, the goal of platform studies is “to consider the lowest level of computing systems and to understand how these systems relate to culture and creativity.”In practice, this involves paying close attentionto specific hardware and software interactions--to the vertical relationships between a platform’s multilayered materialities (Hayles; Kirschenbaum),from transistors to code to cultural reception. Any given act of platform-studies analysis may focus for example on the relationship between the chipset and the OS, or between the graphics processor and display parameters or game developers’ designs.In computing terms, platform is an abstraction(Bogost and Montfort), a pragmatic frame placed around whatever hardware-and-software configuration is required in order to build or run certain specificapplications (including creative works). The object of platform studies is thus a shifting series of possibility spaces, any number of dynamic thresholds between discrete levels of a system

De Novo Sequencing, Assembly, and Annotation of Four Threespine Stickleback Genomes Based on Microfluidic Partitioned DNA Libraries

The threespine stickleback is a geographically widespread and ecologically highly diverse fish that has emerged as a powerful model system for evolutionary genomics and developmental biology. Investigations in this species currently rely on a single high-quality reference genome, but would benefit from the availability of additional, independently sequenced and assembled genomes. We present here the assembly of four new stickleback genomes, based on the sequencing of microfluidic partitioned DNA libraries. The base pair lengths of the four genomes reach 92–101% of the standard reference genome length. Together with their de novo gene annotation, these assemblies offer a resource enhancing genomic investigations in stickleback. The genomes and their annotations are available from the Dryad Digital Repository (https://doi.org/10.5061/dryad.113j3h7)

Neutrinos from Dark Matter annihilations at the Galactic Centre

We discuss the prospects for detection of high energy neutrinos from dark matter annihilation at the Galactic centre. Despite the large uncertainties associated with our poor knowledge of the distribution of dark matter in the innermost regions of the Galaxy, we determine an upper limit on the neutrino flux by requiring that the associated gamma-ray emission does not exceed the observed flux. We conclude that if dark matter is made of neutralinos, a neutrino flux from dark matter annihilations at the GC will not be observable by Antares. Conversely, the positive detection of such a flux would either require an alternative explanation, in terms of astrophysical processes, or the adoption of other \DM candidates, disfavouring the case for neutralinos.Comment: 8 pages, 7 figures, submitted to PR