Polar‐Interball coordinated observations of plasma and magnetic field characteristics in the regions of the northern and southern distant cusps

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/95679/1/jgra16408.pd

Citizen observatory based soil moisture monitoring – The GROW example

GROW Observatory is a project funded under the European Union’s Horizon 2020 research and innovation program. Its aim is to establish a large scale (more than 20,000 participants), resilient and integrated ‘Citizen Observatory’ (CO) and community for environmental monitoring that is self-sustaining beyond the life of the project. This article describes how the initial framework and tools were developed to evolve, bring together and train such a community; raising interest, engaging participants, and educating to support reliable observations, measurements and documentation, and considerations with a special focus on the reliability of the resulting dataset for scientific purposes. The scientific purposes of GROW observatory are to test the data quality and the spatial representativity of a citizen engagement driven spatial distribution as reliably inputs for soil moisture monitoring and to create timely series of gridded soil moisture products based on citizens’ observations using low cost soil moisture (SM) sensors, and to provide an extensive dataset of in situ soil moisture observations which can serve as a reference to validate satellite-based SM products and support the Copernicus in situ component. This article aims to showcase the initial steps of setting up such a monitoring network that has been reached at the mid-way point of the project’s funded period, focusing mainly on the design and development of the CO monitoring network

Experimental study of nonlinear interaction of plasma flow with charged thin current sheets: 1. Boundary structure and motion

We study plasma transport at a thin magnetopause (MP), described hereafter as a thin current sheet (TCS), observed by Cluster at the southern cusp on 13 February 2001 around 20:01 UT. The Cluster observations generally agree with the predictions of the Gas Dynamic Convection Field (GDCF) model in the magnetosheath (MSH) up to the MSH boundary layer, where significant differences are seen. We find for the MP a normal roughly along the GSE x-axis, which implies a clear departure from the local average MP normal, a ~90 km thickness and an outward speed of 35 km/s. Two populations are identified in the MSH boundary layer: the first one roughly perpendicular to the MSH magnetic field, which we interpret as the &quot;incident&quot; MSH plasma, the second one mostly parallel to <b>B</b>. Just after the MP crossing a velocity jet is observed with a peak speed of 240 km/s, perpendicular to <b>B</b>, with <i>M_A</i>=3 and &beta;>10 (peak value 23). The magnetic field clock angle rotates by 70&deg; across the MP. <i>E_x</i> is the main electric field component on both sides of the MP, displaying a bipolar signature, positive on the MSH side and negative on the opposite side, corresponding to a ~300 V electric potential jump across the TCS. The <i>E</i>&times;<i>B</i> velocity generally coincides with the perpendicular velocity measured by CIS; however, in the speed jet a difference between the two is observed, which suggests the need for an extra flow source. We propose that the MP TCS can act locally as an obstacle for low-energy ions (&lt;350 eV), being transparent for ions with larger gyroradius. As a result, the penetration of plasma by finite gyroradius is considered as a possible source for the jet. The role of reconnection is briefly discussed. The electrodynamics of the TCS along with mass and momentum transfer across it are further discussed in the companion paper by Savin et al. (2006)

MIR376A is a regulator of starvation-induced autophagy

Background: Autophagy is a vesicular trafficking process responsible for the degradation of long-lived, misfolded or abnormal proteins, as well as damaged or surplus organelles. Abnormalities of the autophagic activity may result in the accumulation of protein aggregates, organelle dysfunction, and autophagy disorders were associated with various diseases. Hence, mechanisms of autophagy regulation are under exploration. Methods: Over-expression of hsa-miR-376a1 (shortly MIR376A) was performed to evaluate its effects on autophagy. Autophagy-related targets of the miRNA were predicted using Microcosm Targets and MIRanda bioinformatics tools and experimentally validated. Endogenous miRNA was blocked using antagomirs and the effects on target expression and autophagy were analyzed. Luciferase tests were performed to confirm that 3’ UTR sequences in target genes were functional. Differential expression of MIR376A and the related MIR376B was compared using TaqMan quantitative PCR. Results: Here, we demonstrated that, a microRNA (miRNA) from the DlkI/Gtl2 gene cluster, MIR376A, played an important role in autophagy regulation. We showed that, amino acid and serum starvation-induced autophagy was blocked by MIR376A overexpression in MCF-7 and Huh-7 cells. MIR376A shared the same seed sequence and had overlapping targets with MIR376B, and similarly blocked the expression of key autophagy proteins ATG4C and BECN1 (Beclin 1). Indeed, 3’ UTR sequences in the mRNA of these autophagy proteins were responsive to MIR376A in luciferase assays. Antagomir tests showed that, endogenous MIR376A was participating to the control of ATG4C and BECN1 transcript and protein levels. Moreover, blockage of endogenous MIR376A accelerated starvation-induced autophagic activity. Interestingly, MIR376A and MIR376B levels were increased with different kinetics in response to starvation stress and tissue-specific level differences were also observed, pointing out to an overlapping but miRNA-specific biological role. Conclusions: Our findings underline the importance of miRNAs encoded by the DlkI/Gtl2 gene cluster in stress-response control mechanisms, and introduce MIR376A as a new regulator of autophagy

Uncertainties in global crop model frameworks: effects of cultivar distribution, crop management and soil handling on crop yield estimates

Global gridded crop models (GGCMs) combine field-scale agronomic models or sets of plant growth algorithms with gridded spatial input data to estimate spatially explicit crop yields 40 and agricultural externalities at the global scale. Differences in GGCM outputs arise from the use of different bio-physical models, setups, and input data. While algorithms have been in the focus of recent GGCM comparisons, this study investigates differences in maize and wheat yield estimates from five GGCMs based on the public domain field-scale model Environmental Policy Integrated Climate (EPIC) that participate in the AgMIP Global Gridded Crop Model 45 Intercomparison (GGCMI) project. Albeit using the same crop model, the GGCMs differ in model version, input data, management assumptions, parameterization, geographic distribution of cultivars, and selection of subroutines e.g. for the estimation of potential evapotranspiration or soil erosion. The analyses reveal long-term trends and inter-annual yield variability in the EPIC-based GGCMs to be highly sensitive to soil parameterization and crop management. Absolute yield levels as well depend not only on nutrient supply but 50 also on the parameterization and distribution of crop cultivars. All GGCMs show an intermediate performance in reproducing reported absolute yield levels or inter-annual dynamics. Our findings suggest that studies focusing on the evaluation of differences in bio-physical routines may require further harmonization of input data and management assumptions in order to eliminate background noise resulting from differences in model setups. For agricultural impact assessments, employing a GGCM ensemble with its widely varying assumptions 55 in setups appears the best solution for bracketing such uncertainties as long as comprehensive global datasets taking into account regional differences in crop management, cultivar distributions and coefficients for parameterizing agro-environmental processes are lacking. Finally, we recommend improvements in the documentation of setups and input data of GGCMs in order to allow for sound interpretability, comparability and reproducibility of published results

Reduced Expression of Brain-Enriched microRNAs in Glioblastomas Permits Targeted Regulation of a Cell Death Gene

Glioblastoma is a highly aggressive malignant tumor involving glial cells in the human brain. We used high-throughput sequencing to comprehensively profile the small RNAs expressed in glioblastoma and non-tumor brain tissues. MicroRNAs (miRNAs) made up the large majority of small RNAs, and we identified over 400 different cellular pre-miRNAs. No known viral miRNAs were detected in any of the samples analyzed. Cluster analysis revealed several miRNAs that were significantly down-regulated in glioblastomas, including miR-128, miR-124, miR-7, miR-139, miR-95, and miR-873. Post-transcriptional editing was observed for several miRNAs, including the miR-376 family, miR-411, miR-381, and miR-379. Using the deep sequencing information, we designed a lentiviral vector expressing a cell suicide gene, the herpes simplex virus thymidine kinase (HSV-TK) gene, under the regulation of a miRNA, miR-128, that was found to be enriched in non-tumor brain tissue yet down-regulated in glioblastomas, Glioblastoma cells transduced with this vector were selectively killed when cultured in the presence of ganciclovir. Using an in vitro model to recapitulate expression of brain-enriched miRNAs, we demonstrated that neuronally differentiated SH-SY5Y cells transduced with the miRNA-regulated HSV-TK vector are protected from killing by expression of endogenous miR-128. Together, these results provide an in-depth analysis of miRNA dysregulation in glioblastoma and demonstrate the potential utility of these data in the design of miRNA-regulated therapies for the treatment of brain cancers

The Value of Global Earth Observations

Humankind has never been so populous, technically equipped, and economically and culturally integrated as it is today. In the twenty-first century, societies are confronted with a multitude of challenges in their efforts to manage the Earth system

Functionally Orthologous Viral and Cellular MicroRNAs Studied by a Novel Dual-Fluorescent Reporter System

Recent research raised the possibility that some viral microRNAs (miRNAs) may function as orthologs of cellular miRNAs. In the present work, to study the functional orthologous relationships of viral and cellular miRNAs, we first constructed a dual-fluorescent protein reporter vector system for the easy determination of miRNA function. By expressing the miRNAs and the indicator and internal control fluorescent proteins individually from a single vector, this simple reporter system can be used for miRNA functional assays that include visualizing miRNA activity in live cells. Sequence alignments indicated that the simian virus 40 (SV40) encoded miRNA sv40-mir-S1-5p contains a seed region identical to that of the human miRNA hsa-miR423-5p. Using the new reporter system, it was found that sv40-mir-S1-5p and hsa-miR423-5p downregulate the expression of common artificial target mRNAs and some predicted biological targets of hsa-miR423-5p, demonstrating that they are functional orthologs. The human immunodeficiency virus 1 (HIV-1) encoded hiv1-miR-N367 also contains a seed sequence identical to that of the human miRNA hsa-miR192. Functional assays showed that hiv1-miR-N367 and hsa-miR192 could downregulate common artificial and predicted biological targets, suggesting that these miRNAs may also act as functional orthologs. Thus, this study presents a simple and universal system for testing miRNA function and identifies two new pairs of functional orthologs, sv40-mir-S1-5p and hsa-miR423-5p as well as hiv-1-miR-N367 and hsa-miR192. These findings also expand upon our current knowledge of functional homology and imply that a more general phenomenon of orthologous relationships exists between viral and cellular miRNAs

Integrated Multi-scale Modeling Framework for Assessment of Land-use Related Challenges under Global Change

Land is the cornerstone of many of the sustainability challenges the world is facing. About 800 million people are still undernourished today, mostly in rural areas. Agriculture will need to expand production by 60% by 2050 to satisfy future food demand but is anticipated to be the sector most directly hit by climate change. At the same time, agriculture, forestry, and land-use change are responsible for 25% of global anthropogenic greenhouse gas (GHG) emissions and these sectors are also key to achieving climate stabilization, as they can provide negative emissions through afforestation and bioenergy production with carbon capture and storage. Advanced system analysis tools are required to capture the multiple dimensions of these challenges: the global partial equilibrium model of agricultural and forest sectors, Global Biosphere Management Model, developed at IIASA, represents the state of the art in model linking across sectors, disciplines, and spatial scales. This model integrates information from a 1x1 km grid where the land characteristics and climate are defined, up to 30 regional aggregates where the international trade is represented. Spatially explicit production activities are defined through Leontief production functions representing the input-output relationships of a large set of production systems/technologies. Crops, grass, livestock, and forest systems are parameterized through biophysical models which capture overall production and environmental impacts such as carbon and nitrogen balances, water use, or GHG emissions. The model can also be used for market foresight, integrated assessment of climate change impacts and adaptation, or for assessment of mitigation options by providing to energy system models, such as Model for Energy Supply Strategy Alternatives and their General Environmental Impact (MESSAGE) at IIASA, economic information on abatement potential through emissions reduction, carbon sequestration and bioenergy production. More specific applications of the model have also been applied at global, regional and even national level, and validated by numerous publications