A Mass-Spring-Damper Model of a Bouncing Ball

The mechanical properties of a vertically dropped ball, represented by an equivalent mass-spring-damper model, are shown to be related to impact parameters. In particular, the paper develops relationships connecting the mass, stiffness and damping of a linear ball model to the coefficient of restitution and the contact time of the ball with the surface during one bounce. The paper also shows that the ball model parameters are functions of quantities readily determined in an experiment: (i) the height from which the ball is dropped from rest, (ii) the number of bounces, and (iii) the time elapsing between dropping the ball and the ball coming to rest. For a ball with significant bounce, approximate expressions are derived for the model parameters as well as for the natural frequency and damping ratio. Results from numerical and experimental studies of a bouncing ping-pong ball are presented

A Mass-Spring-Damper Model of a Bouncing Ball (Conference proceeding)

The mechanical properties of a vertically dropped ball, represented by an equivalent mass-spring-damper model, are related to the coefficient of restitution and the time of contact of the ball during one bounce with the impacting surface. In addition, it is shown that the coefficient of restitution and contact time of a single bounce are related to the total number of bounces and the total time elapsing between dropping the ball and the ball coming to rest. For a ball with significant bounce, approximate expressions for model parameters, i.e., stiffness and damping or equivalently natural frequency and damping ratio, are developed. Experimentally based results for a bouncing pingpong ball are presented

Simulating the effects of management practices on cropland soilorganic carbon changes in the Temperate Prairies Ecoregion of theUnited States from 1980 to 2012

Understanding the effects of management practices on soil organic carbon (SOC) is important for design-ing effective policies to mitigate greenhouse gas emissions in agriculture. In the Midwest United States,management practices in the croplands have been improved to increase crop production and reduce SOCloss since the 1980s. Many studies of SOC dynamics in croplands have been performed to understandthe effects of management, but the results are still not conclusive. This study quantified SOC dynam-ics in the Midwest croplands from 1980 to 2012 with the General Ensemble Biogeochemical ModellingSystem (GEMS) and available management data. Our results showed that the total SOC in the croplandsdecreased from 1190 Tg C in 1980 to 1107 TgC in 1995, and then increased to 1176 TgC in 2012. Contin-uous cropping and intensive tillage may have driven SOC loss in the early period. The increase of cropproduction and adoption of conservation tillage increased the total SOC so that the decrease in the totalSOC stock after 32 years was only 1%. The small change in average SOC did not reflect the large spatialvariations of SOC change in the region. Major SOC losses occurred in the north and south of the region,where SOC baseline values were high and cropland production was low. The SOC gains took place in thecentral part of the region where SOC baseline values were moderate and cropland production was higherthan the other areas. We simulated multiple land-use land-cover (LULC) change scenarios and analyzedthe results. The analysis showed that among all the LULC changes, agricultural technology that increasedcropland production had the greatest impact on SOC changes, followed by the tillage practices, changesin crop species, and the conversions of cropland to other land use. Information on management practiceinduced spatial variation in SOC can be useful for policy makers and farm managers to develop long-termmanagement strategies for increasing SOC sequestration in different areas

Feature selection with interactions in logistic regression models using multivariate synergies for a GWAS application

Abstract Background Genotype-phenotype association has been one of the long-standing problems in bioinformatics. Identifying both the marginal and epistatic effects among genetic markers, such as Single Nucleotide Polymorphisms (SNPs), has been extensively integrated in Genome-Wide Association Studies (GWAS) to help derive “causal” genetic risk factors and their interactions, which play critical roles in life and disease systems. Identifying “synergistic” interactions with respect to the outcome of interest can help accurate phenotypic prediction and understand the underlying mechanism of system behavior. Many statistical measures for estimating synergistic interactions have been proposed in the literature for such a purpose. However, except for empirical performance, there is still no theoretical analysis on the power and limitation of these synergistic interaction measures. Results In this paper, it is shown that the existing information-theoretic multivariate synergy depends on a small subset of the interaction parameters in the model, sometimes on only one interaction parameter. In addition, an adjusted version of multivariate synergy is proposed as a new measure to estimate the interactive effects, with experiments conducted over both simulated data sets and a real-world GWAS data set to show the effectiveness. Conclusions We provide rigorous theoretical analysis and empirical evidence on why the information-theoretic multivariate synergy helps with identifying genetic risk factors via synergistic interactions. We further establish the rigorous sample complexity analysis on detecting interactive effects, confirmed by both simulated and real-world data sets.https://deepblue.lib.umich.edu/bitstream/2027.42/142802/1/12864_2018_Article_4552.pd

ING116070: a study of the pharmacokinetics and antiviral activity of dolutegravir in cerebrospinal fluid in HIV-1-infected, antiretroviral therapy-naive subjects.

BackgroundDolutegravir (DTG), a once-daily, human immunodeficiency virus type 1 (HIV-1) integrase inhibitor, was evaluated for distribution and antiviral activity in cerebrospinal fluid (CSF).MethodsING116070 is an ongoing, single-arm, open-label, multicenter study in antiretroviral therapy-naive, HIV-1-infected adults. Subjects received DTG (50 mg) plus abacavir/lamivudine (600/300 mg) once daily. The CSF and plasma (total and unbound) DTG concentrations were measured at weeks 2 and 16. The HIV-1 RNA levels were measured in CSF at baseline and weeks 2 and 16 and in plasma at baseline and weeks 2, 4, 8, 12, and 16.ResultsThirteen white men enrolled in the study; 2 withdrew prematurely, 1 because of a non-drug-related serious adverse event (pharyngitis) and 1 because of lack of treatment efficacy. The median DTG concentrations in CSF were 18 ng/mL (range, 4-23 ng/mL) at week 2 and 13 ng/mL (4-18 ng/mL) at week 16. Ratios of DTG CSF to total plasma concentration were similar to the unbound fraction of DTG in plasma. Median changes from baseline in CSF (n = 11) and plasma (n = 12) HIV-1 RNA were -3.42 and -3.04 log10 copies/mL, respectively. Nine of 11 subjects (82%) had plasma and CSF HIV-1 RNA levels <50 copies/mL and 10 of 11 (91%) had CSF HIV-1 RNA levels <2 copies/mL at week 16.ConclusionsThe DTG concentrations in CSF were similar to unbound plasma concentrations and exceeded the in vitro 50% inhibitory concentration for wild-type HIV (0.2 ng/mL), suggesting that DTG achieves therapeutic concentrations in the central nervous system. The HIV-1 RNA reductions were similar in CSF and plasma. Clinical Trials Registration. NCT01499199

Estimating seasonal evapotranspiration from temporal satellite images

Estimating seasonal evapotranspiration (ET) has many applications in water resources planning and management, including hydrological and ecological modeling. Availability of satellite remote sensing images is limited due to repeat cycle of satellite or cloud cover. This study was conducted to determine the suitability of different methods namely cubic spline, fixed, and linear for estimating seasonal ET from temporal remotely sensed images. Mapping Evapotranspiration at high Resolution with Internalized Calibration (METRIC) model in conjunction with the wet METRIC (wMETRIC), a modified version of the METRIC model, was used to estimate ET on the days of satellite overpass using eight Landsat images during the 2001 crop growing season in Midwest USA. The model-estimated daily ET was in good agreement (R2 = 0.91) with the eddy covariance tower-measured daily ET. The standard error of daily ET was 0.6 mm (20%) at three validation sites in Nebraska, USA. There was no statistically significant difference (P\u3e0.05) among the cubic spline, fixed, and linear methods for computing seasonal (July–December) ET from temporal ET estimates. Overall, the cubic spline Estimating seasonal evapotranspiration (ET) has many applications in water resources planning and management, including hydrological and ecological modeling. Availability of satellite remote sensing images is limited due to repeat cycle of satellite or cloud cover. This study was conducted to determine the suitability of different methods namely cubic spline, fixed, and linear for estimating seasonal ET from temporal remotely sensed images. Mapping Evapotranspiration at high Resolution with Internalized Calibration (METRIC) model in conjunction with the wet METRIC (wMETRIC), a modified version of the METRIC model, was used to estimate ET on the days of satellite overpass using eight Landsat images during the 2001 crop growing season in Midwest USA. The model-estimated daily ET was in good agreement (R2 = 0.91) with the eddy covariance tower-measured daily ET. The standard error of daily ET was 0.6 mm (20%) at three validation sites in Nebraska, USA. There was no statistically significant difference (P[0.05) among the cubic spline, fixed, and linear methods for computing seasonal (July–December) ET from temporal ET estimates. Overall, the cubic splin

Estimating seasonal evapotranspiration from temporal satellite images

Estimating seasonal evapotranspiration (ET) has many applications in water resources planning and management, including hydrological and ecological modeling. Availability of satellite remote sensing images is limited due to repeat cycle of satellite or cloud cover. This study was conducted to determine the suitability of different methods namely cubic spline, fixed, and linear for estimating seasonal ET from temporal remotely sensed images. Mapping Evapotranspiration at high Resolution with Internalized Calibration (METRIC) model in conjunction with the wet METRIC (wMETRIC), a modified version of the METRIC model, was used to estimate ET on the days of satellite overpass using eight Landsat images during the 2001 crop growing season in Midwest USA. The model-estimated daily ET was in good agreement (R2 = 0.91) with the eddy covariance tower-measured daily ET. The standard error of daily ET was 0.6 mm (20%) at three validation sites in Nebraska, USA. There was no statistically significant difference (P\u3e0.05) among the cubic spline, fixed, and linear methods for computing seasonal (July–December) ET from temporal ET estimates. Overall, the cubic spline Estimating seasonal evapotranspiration (ET) has many applications in water resources planning and management, including hydrological and ecological modeling. Availability of satellite remote sensing images is limited due to repeat cycle of satellite or cloud cover. This study was conducted to determine the suitability of different methods namely cubic spline, fixed, and linear for estimating seasonal ET from temporal remotely sensed images. Mapping Evapotranspiration at high Resolution with Internalized Calibration (METRIC) model in conjunction with the wet METRIC (wMETRIC), a modified version of the METRIC model, was used to estimate ET on the days of satellite overpass using eight Landsat images during the 2001 crop growing season in Midwest USA. The model-estimated daily ET was in good agreement (R2 = 0.91) with the eddy covariance tower-measured daily ET. The standard error of daily ET was 0.6 mm (20%) at three validation sites in Nebraska, USA. There was no statistically significant difference (P[0.05) among the cubic spline, fixed, and linear methods for computing seasonal (July–December) ET from temporal ET estimates. Overall, the cubic splin

A Vacuum-driven Origami “Magic-ball” Soft Gripper

Soft robotics has yielded numerous examples of soft grippers that utilize compliance to achieve impressive grasping performances with great simplicity, adaptability, and robustness. Designing soft grippers with substantial grasping strength while remaining compliant and gentle is one of the most important challenges in this field. In this paper, we present a light-weight, vacuum-driven soft robotic gripper made of an origami “magic-ball” and a flexible thin membrane. We also describe the design and fabrication method to rapidly manufacture the gripper with different combinations of lowcost materials for diverse applications. Grasping experiments demonstrate that our gripper can lift a large variety of objects, including delicate foods, heavy bottles, and other miscellaneous items. The grasp force on 3D-printed objects is also characterized through mechanical load tests. The results reveal that our soft gripper can produce significant grasp force on various shapes using negative pneumatic pressure (vacuum). This new gripper holds the potential for many practical applications that require safe, strong, and simple graspingUnited States. Defense Advanced Research Projects Agency (award number FA8650-15-C-7548)National Science Foundation (U.S.) (award number 1830901)Wyss Institute for Biologically Inspired EngineeringJD.co

Insertion of T4-lysozyme (T4L) can be a useful tool for studying olfactory-related GPCRs.

The detergents used to solubilize GPCRs can make crystal growth the rate-limiting step in determining their structure. The Kobilka laboratory showed that insertion of T4-lysozyme (T4L) in the 3rd intracellular loop is a promising strategy towards increasing the solvent-exposed receptor area, and hence the number of possible lattice-forming contacts. The potential to use T4L with the olfactory-related receptors hOR17-4 and hVN1R1 was thus tested. The structure and function of native and T4L-variants were compared. Both receptors localized to the cell membrane, and could initiate ligand-activated signaling. Purified receptors not only had the predicted alpha-helical structures, but also bound their ligands canthoxal (MW = 178.23) and myrtenal (MW = 150.22). Interestingly, the T4L variants had higher percentages of soluble monomers compared to protein aggregates, effectively increasing the protein yield that could be used for structural and function studies. They also bound their ligands for longer times, suggesting higher receptor stability. Our results indicate that a T4L insertion may be a general method for obtaining GPCRs suitable for structural studies

Identification of ferroptosis, necroptosis, and pyroptosis-associated genes in periodontitis-affected human periodontal tissue using integrated bioinformatic analysis

Introduction: Periodontitis is a chronic inflammatory oral disease that destroys soft and hard periodontal support tissues. Multiple cell death modes including apoptosis, necroptosis, pyroptosis, and ferroptosis play a crucial role in the pathogenicity of inflammatory diseases. This study aimed to identify genes associated with ferroptosis, necroptosis, and pyroptosis in different cells present in the periodontium of periodontitis patients.Methods: Gingival tissues’ mRNA sequencing dataset GSE173078 of 12 healthy control and 12 periodontitis patients’ and the microarray dataset GSE10334 of 63 healthy controls and 64 periodontitis patients’ were obtained from Gene Expression Omnibus (GEO) database. A total of 910 differentially expressed genes (DEGs) obtained in GSE173078 were intersected with necroptosis, pyroptosis, and ferroptosis-related genes to obtain the differential genes associated with cell death (DCDEGs), and the expression levels of 21 differential genes associated with cell death were verified with dataset GSE10334.Results: Bioinformatic analysis revealed 21 differential genes associated with cell death attributed to ferroptosis, pyroptosis, and necroptosis in periodontitis patients compared with healthy controls. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses revealed that 21 differential genes associated with cell death were related to various cellular and immunological pathways including inflammatory responses, necroptosis, and osteoclast differentiation. Additionally, the single-cell RNA (scRNA) sequencing data GSE171213 of 4 healthy controls and 5 periodontitis patients’ periodontal tissue was analyzed to obtain cell clustering and cell types attributed to differential genes associated with cell death. We found that among 21 DCDEGs, SLC2A3, FPR2, TREM1, and IL1B were mainly upregulated in neutrophils present in the periodontium of periodontitis patients. Gene overlapping analysis revealed that IL-1B is related to necroptosis and pyroptosis, TREM1 and FPR2 are related to pyroptosis, and SLC2A3 is related to ferroptosis. Finally, we utilized the CIBERSORT algorithm to assess the association between DCDEGs and immune infiltration phenotypes, based on the gene expression profile of GSE10334. The results revealed that the upregulated SLC2A3, FPR2, TREM1, and IL1B were positively correlated with neutrophil infiltration in the periodontium.Discussion: The findings provide upregulated SLC2A3, FPR2, TREM1, and IL1B in neutrophils as a future research direction on the mode and mechanism of cell death in periodontitis and their role in disease pathogenicity