Influence of natural and novel organic carbon sources on denitrification in forest, degraded urban, and restored streams

Organic carbon is important in regulating ecosystem function, and its source and abundance may be altered by urbanization. We investigated shifts in organic carbon quantity and quality associated with urbanization and ecosystem restoration, and its potential effects on denitrification at the riparian-stream interface. Field measurements of streamwater chemistry, organic carbon characterization, and laboratory-based denitrification experiments were completed at two forested, two restored, and two unrestored urban streams at the Baltimore Long-Term Ecological Research site, Maryland, USA. Dissolved organic carbon (DOC) and nitrate loads increased with runoff according to a power-law function that varied across sites. Stable isotopes and molar C:N ratios suggested that stream particulate organic matter (POM) was a mixture of periphyton, leaves, and grass that varied across site types. Stable-isotope signatures and lipid biomarker analyses of sediments showed that terrestrial organic carbon sources in streams varied as a result of riparian vegetation. Laboratory experiments indicated that organic carbon amendments significantly increased rates of denitrification (35.1 +/- 9.4 ng N.[g dry sediment](-1).h(-1); mean +/- SE) more than nitrate amendments (10.4 +/- 4.0 ng N.[g dry sediment](-1).h(-1)) across streamflow conditions and sites. Denitrification experiments with naturally occurring carbon sources showed that denitrification was significantly higher with grass clippings from home lawns (1244 +/- 331 ng N.g dry sediment(-1).h(-1)), and overall unrestored urban sites showed significantly higher denitrification rates than restored and forest sites. We found that urbanization influences organic carbon sources and quality in streams, which can have substantial downstream impacts on ecosystem services such as denitrification

Dysbiosis In Epizootic Shell Disease Of The American Lobster (Homarus Americanus)

Epizootic shell disease (ESD) in the American lobster ( Homarus americanus) is continuing to affect the southern New England lobster population, and the etiology of the disease has not been well defined. We hypothesized that a dysbiotic shift in the shell microbial biofilm played a key part in the etiology of the disease. We analyzed the community structure of the surface microflora of apparently healthy and diseased lobsters using multitag pyrosequencing to correlate the abundance of key taxa within the lesions. Discriminant analysis (DA) was used to identify taxa in the microbial community that were associated with diseased and healthy states. Among the 170 bacterial taxa that were identified, 58 were helpful in determining the diseased and healthy states. The remaining 112 were not significantly different between the 2 states. The genus Aquimarina was present in high abundance in both healthy and diseased lobsters, but had a significantly higher abundance on animals in the diseased state. However, DA demonstrated that this genus does not strongly discriminate between the diseased and healthy state. Phylogenetic analysis indicated that there was significant strain diversity of this genus in all the samples analyzed. Our results indicate that the lesions seen in ESD may be viewed as being correlated with a polymicrobial component rather than being caused by a discrete pathogen

Single-stranded genomic architecture constrains optimal codon usage

Viral codon usage is shaped by the conflicting forces of mutational pressure and selection to match host patterns for optimal expression. We examined whether genomic architecture (single- or double-stranded DNA) influences the degree to which bacteriophage codon usage differ from their primary bacterial hosts and each other. While both correlated equally with their hosts' genomic nucleotide content, the coat genes of ssDNA phages were less well adapted than those of dsDNA phages to their hosts' codon usage profiles due to their preference for codons ending in thymine. No specific biases were detected in dsDNA phage genomes. In all nine of ten cases of codon redundancy in which a specific codon was overrepresented, ssDNA phages favored the NNT codon. A cytosine to thymine biased mutational pressure working in conjunction with strong selection against non-synonymous mutations appears be shaping codon usage bias in ssDNA viral genomes

General Rules for Optimal Codon Choice

Different synonymous codons are favored by natural selection for translation efficiency and accuracy in different organisms. The rules governing the identities of favored codons in different organisms remain obscure. In fact, it is not known whether such rules exist or whether favored codons are chosen randomly in evolution in a process akin to a series of frozen accidents. Here, we study this question by identifying for the first time the favored codons in 675 bacteria, 52 archea, and 10 fungi. We use a number of tests to show that the identified codons are indeed likely to be favored and find that across all studied organisms the identity of favored codons tracks the GC content of the genomes. Once the effect of the genomic GC content on selectively favored codon choice is taken into account, additional universal amino acid specific rules governing the identity of favored codons become apparent. Our results provide for the first time a clear set of rules governing the evolution of selectively favored codon usage. Based on these results, we describe a putative scenario for how evolutionary shifts in the identity of selectively favored codons can occur without even temporary weakening of natural selection for codon bias

Fast Purcell-enhanced single photon source in 1,550-nm telecom band from a resonant quantum dot-cavity coupling

High-bit-rate nanocavity-based single photon sources in the 1,550-nm telecom band are challenges facing the development of fibre-based long-haul quantum communication networks. Here we report a very fast single photon source in the 1,550-nm telecom band, which is achieved by a large Purcell enhancement that results from the coupling of a single InAs quantum dot and an InP photonic crystal nanocavity. At a resonance, the spontaneous emission rate was enhanced by a factor of 5 resulting a record fast emission lifetime of 0.2 ns at 1,550 nm. We also demonstrate that this emission exhibits an enhanced anti-bunching dip. This is the first realization of nanocavity-enhanced single photon emitters in the 1,550-nm telecom band. This coupled quantum dot cavity system in the telecom band thus provides a bright high-bit-rate non-classical single photon source that offers appealing novel opportunities for the development of a long-haul quantum telecommunication system via optical fibres.Comment: 16 pages, 4 figure

Ultrafast nonlocal control of spontaneous emission

Solid-state cavity quantum electrodynamics systems will form scalable nodes of future quantum networks, allowing the storage, processing and retrieval of quantum bits, where a real-time control of the radiative interaction in the cavity is required to achieve high efficiency. We demonstrate here the dynamic molding of the vacuum field in a coupled-cavity system to achieve the ultrafast nonlocal modulation of spontaneous emission of quantum dots in photonic crystal cavities, on a timescale of ~200 ps, much faster than their natural radiative lifetimes. This opens the way to the ultrafast control of semiconductor-based cavity quantum electrodynamics systems for application in quantum interfaces and to a new class of ultrafast lasers based on nano-photonic cavities.Comment: 15 pages, 4 figure

From a literature review to a conceptual framework for health sector websites’ assessment

Health sector institutions’ websites need to act as effective web resources of information and interactive communication mediums to address the versatile demands of their multiple stakeholders. Academic and practitioner interest in health sector website assessment has considerably risen in recent years. This can be seen by the number of papers published in journals. The purpose of this paper is twofold to further establish the field. First, it offers a literature re-view on hospitals’ websites assessment. Second, it offers a conceptual framework to address the website assessment issue in health sector. The proposed assessment framework focuses on four main criteria: content, technology, services, and participation being evaluated by the use of several indicators. Academics, hospital practitioners, public officials and users will find the review and the framework useful, as they outline major lines of research in the field and a method to assess health institution websites.This paper is a result of the project “SmartEGOV: Harnessing EGOV for Smart Governance (Foundations, methods, Tools) / NORTE-01-0145-FEDER-000037”, supported by Norte Portugal Regional Operational Programme (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (EFDR).info:eu-repo/semantics/publishedVersio

Lennox gastaut syndrome, review of the literature and a case report

<p>Abstract</p> <p>Background</p> <p>Lennox-Gastaut syndrome (LGS) is a severe form of childhood epilepsy that is defined by generalized multiple type seizures, slowness of intellectual growth, and a specific EEG disturbance. Children affected might previously have infantile spasms or underlying brain disorder but etiology can be idiopathic. In South Africa, the incidence of secondary epilepsy is higher than what is found in developed countries resulting in higher incidence of the disease. LGS seizures are often treatment resistant and the long term prognosis is poor.</p> <p>Report</p> <p>A twenty six year old female, presented with anterior open bite, macroglossia, supragingival as well as subgingival calculus. The gingiva was red, swollen and friable and there was generalized bleeding and localized suppuration. The patient had gingival recession. After periodontal therapy a remarkable improvement in oral health status was noted.</p> <p>Conclusion</p> <p>The clinical findings in LGS included facial deformities, periodontitis and gingival swellings. Interdisciplinary treatment of these patients is fundamental and oral attention is of outstanding importance. Non-surgical periodontal therapy was effective in controlling periodontal disease in the reported case, but prevention of periodontal and dental diseases is preferable for this high-risk group of patients.</p

Evolutionary Analysis of Mitogenomes from Parasitic and Free-Living Flatworms

Copyright: © 2015 Solà et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. The attached file is the published version of the article