Impacts of Laurel Wilt Disease on Native Persea of the Southeastern United States

Laurel Wilt Disease (LWD) has caused severe mortality in native Persea species of the southeastern United States since it was first detected in 2003. This study was designed to document the range-wide population impacts to LWD, as well as the patterns of mortality and regeneration in Persea ecosystems. I used Forest Inventory and Analysis (FIA) data from the U.S. Forest Service to estimate Persea borbonia (red bay) populations from 2003 to 2011 to see if any decline could be observed since the introduction of LWD causal agents. Population estimates from 2003 to 2011 suggest that the population is declining. The population in Georgia significantly decreased from ca. 241.1 ± 11.9 million stems in 2003 to ca. 150.3 ± 7.9 million in 2011. Red bay densities decreased significantly in plots surveyed before and after the reported infection by an average of 89.6 live red bay stems/ha. I developed a logistic regression model to predict the probability of red bay mortality due to LWD. Number of years since LWD infection was the most significant variable, with every increase in 1 year resulting in a 153.7 % increase in odds of death. Diameter was also a significant predictor, with an increase of 1 cm DBH resulting in a 5.0 % increase in odds of death. To document the stand characteristics of red bay and swamp bay (Persea palustris) communities, I analyzed data collected from 1988-2012 by the Carolina Vegetation Survey. We used cluster analyses and species indicator analyses to group 388 plots into distinct communities. Red bay and swamp bay communities were significantly different in species composition. In addition, red bay was almost exclusively limited to maritime coastal forests, whereas swamp bay had a significantly larger geographical range, extending from near coastal setting inland through the fall-line sandhills. I surveyed plots from 1 to 10 years post LWD in South Carolina and Georgia. We did not find evidence of invasive species abundance increasing after LWD. Nearly all Persea in a plot are killed within the first two years of LWD, with the exception of smaller stems under 2.5 cm in diameter. After 10 years, Persea has regained much of the basal area prior to infection, however the structure of the stand is predominantly composed of small diameter stems (1 – 5 cm DBH). Seedling densities remain relatively the same throughout all recovery years. Contrary to initial fears, this study suggests that the native Persea species in the U.S. are not on the immediate verge of extinction from LWD at this time. However, it is still too early to say whether these species will fully recover from the disease

Heat engines and heat pumps in a hydrostatic atmosphere: How surface pressure and temperature constrain wind power output and circulation cell size

The kinetic energy budget of the atmosphere's meridional circulation cells is analytically assessed. In the upper atmosphere kinetic energy generation grows with increasing surface temperature difference \$\Delta T_s\$ between the cold and warm ends of a circulation cell; in the lower atmosphere it declines. A requirement that kinetic energy generation is positive in the lower atmosphere limits the poleward cell extension \$L\$ of Hadley cells via a relationship between \$\Delta T_s\$ and surface pressure difference \$\Delta p_s\$: an upper limit exists when \$\Delta p_s\$ does not grow with increasing \$\Delta T_s\$. This pattern is demonstrated here using monthly data from MERRA re-analysis. Kinetic energy generation along air streamlines in the boundary layer does not exceed \$40\$~J~mol\$^{-1}\$; it declines with growing \$L\$ and reaches zero for the largest observed \$L\$ at 2~km height. The limited meridional cell size necessitates the appearance of heat pumps -- circulation cells with negative work output where the low-level air moves towards colder areas. These cells consume the positive work output of the heat engines -- cells where the low-level air moves towards the warmer areas -- and can in theory drive the global efficiency of atmospheric circulation down to zero. Relative contributions of \$\Delta p_s\$ and \$\Delta T_s\$ to kinetic energy generation are evaluated: \$\Delta T_s\$ dominates in the upper atmosphere, while \$\Delta p_s\$ dominates in the lower. Analysis and empirical evidence indicate that the net kinetic power output on Earth is dominated by surface pressure gradients, with minor net kinetic energy generation in the upper atmosphere. The role of condensation in generating surface pressure gradients is discussed.Comment: 26 pages, 9 figures, 2 tables; re-organized presentation, more discussion and a new figure (Fig. 4) added; in Fig. 3 the previously invisible dots (observations) can now be see

The Role of Central Banks and Competition Policies in the Rescue and Recapitalisation of Financial Institutions During (and in the Aftermath of) the Financial Crisis

Recent years have witnessed a change in focus from considerations of factors which could impede competition, for example over-regulation, to the need to strike a balance between over-regulation and insufficient regulation – in order to provide the right level of safety for consumers (such that they are protected from risky investments). A driving force behind the need for deregulation over the past two decades has been the objective and desire to foster competition. Re-regulation thereafter assumed centre stage in some jurisdictions in response to the need to manage cross sector services' risks more efficiently. Rescue cases involving guarantees (contrasted with restructuring cases) during the recent Financial Crisis, have illustrated the prominent position which the goal of promoting financial stability has assumed over that of the prevention or limitation of possible distortions of competition which may arise when granting State aid. The importance attached to maintaining and promoting financial stability - as well as the need to facilitate rescue and restructuring measures aimed at preventing systemically relevant financial institutions from failure, demonstrate how far authorities are willing to overlook certain competition policies. However increased government and central bank intervention also simultaneously trigger the usual concerns – which include moral hazard and the danger of serving as long term substitutes for market discipline. An interesting observation derives from the relationship between State aid grants, competition, and the potential to induce higher risk taking levels. Whilst the need to promote and maintain financial stability is paramount, safeguards need to be implemented and enforced to ensure that measures geared towards the aim of sustaining system stability (measures such as lender of last resort arrangements and State rescues) do not unduly distort competition as well as induce higher risk taking levels. This paper will draw attention to safeguards which have been provided by the Commission where approval is considered for the grant of State aid to financial institutions whose problems are attributable to inefficiencies, poor asset liability management or risky strategies. Whether the distinction drawn by the Commission – with regards to the preferential grant of recapitalisation packages to fundamentally sound banks (which require less restructuring measures)is justified, will also be considered. How far central banks and governments should intervene and how far distortions of competition should be permitted ultimately depends on how systemically relevant a financial institution is

β-Glucan is a major growth substrate for human gut bacteria related to Coprococcus eutactus

A clone encoding carboxymethyl cellulase activity was isolated during functional screening of a human gut metagenomic library using Lactococcus lactis MG1363 as heterologous host. The insert carried a glycoside hydrolase family 9 (GH9) catalytic domain with sequence similarity to a gene from Coprococcus eutactus ART55/1. Genome surveys indicated a limited distribution of GH9 domains among dominant human colonic anaerobes. Genomes of C. eutactus-related strains harboured two GH9-encoding and four GH5-encoding genes, but the strains did not appear to degrade cellulose. Instead, they grew well on β-glucans and one of the strains also grew on galactomannan, galactan, glucomannan and starch. Coprococcus comes and Coprococcus catus strains did not harbour GH9 genes and were not able to grow on β-glucans. Gene expression and proteomic analysis of C. eutactus ART55/1 grown on cellobiose, β-glucan and lichenan revealed similar changes in expression in comparison to glucose. On β-glucan and lichenan only, one of the four GH5 genes was strongly upregulated. Growth on glucomannan led to a transcriptional response of many genes, in particular a strong upregulation of glycoside hydrolases involved in mannan degradation. Thus, β-glucans are a major growth substrate for species related to C. eutactus, with glucomannan and galactans alternative substrates for some strains

Tracking invasion and invasiveness in queensland fruit flies: From classical genetics to ‘omics’

Three Australian tephritid fruit flies (Bactrocera tryoni – Q-fly, Bactrocera neohumeralis – NEO, and Bactrocera jarvisi – JAR) are promising models for genetic studies of pest status and invasiveness. The long history of ecological and physiological studies of the three species has been augmented by the development of a range of genetic and genomic tools, including the capacity for forced multigeneration crosses between the three species followed by selection experiments, a draft genome for Q-fly, and tissue- and stage-specific transcriptomes. The Q-fly and NEO species pair is of particular interest. The distribution of NEO is contained entirely within the wider distribution of Q-fly and the two species are ecologically extremely similar, with no known differences in pheromones, temperature tolerance, or host-fruit utilisation. However there are three clear differences between them: humeral callus colour, complete pre-mating isolation based on mating time-of-day, and invasiveness. NEO is much less invasive, whereas in historical times Q-fly has invaded southeastern Australia and areas of Western Australia and the Northern Territory. In southeastern fruit-growing regions, microsatellites suggest that some of these outbreaks might derive from genetically differentiated populations overwintering in or near the invaded area. Q-fly and NEO show very limited genome differentiation, so comparative genomic analyses and QTL mapping should be able to identify the regions of the genome controlling mating time and invasiveness, to assess the genetic bases for the invasive strains of Q-fly, and to facilitate a variety of improvements to current sterile insect control strategies for that species

Measurement of cardiorespiratory fitness in children from two commonly used field tests after accounting for body fatness and maturity

Body fat and maturation both influence cardiorespiratory fitness, however few studies have taken these variables into account when using field tests to predict children's fitness levels. The purpose of this study was to determine the relationship between two field tests of cardiorespiratory fitness (20 m Maximal Multistage Shuttle Run [20-MST], 550 m distance run [550-m]) and direct measurement of VO2max after adjustment for body fatness and maturity levels. Fifty-three participants (25 boys, 28 girls, age 10.6 ± 1.2 y, mean ± SD) had their body fat levels estimated using bioelectrical impedance (16.6% ± 6.0% and 20.0% ± 5.8% for boys and girls, respectively). Participants performed in random order, the 20-MST and 550-m run followed by a progressive treadmill test to exhaustion during which gas exchange measures were taken. Pearson correlation coefficient analysis revealed that the participants' performance in the 20-MST and 550-m run were highly correlated to VO2 max obtained during the treadmill test to exhaustion (r = 0.70 and 0.59 for 20-MST and 550-m run, respectively). Adjusting for body fatness and maturity levels in a multivariate regression analysis increased the associations between the field tests and VO2max (r = 0.73 for 20-MST and 0.65 for 550-m). We may conclude that both the 20-MST and the 550-m distance run are valid field tests of cardiorespiratory fitness in New Zealand 8-13 year old children and incorporating body fatness and maturity levels explains an additional 5-7% of the variance. © Editorial Committee of Journal of Human Kinetics

Nonsymbiotic hemoglobins in rice are synthesized during germination and in differentiating cell types

Nonsymbiotic hemoglobins (ns-Hbs) previously have been found in monocots and dicots; however, very little is known about the tissue and cell type localization as well as the physiological function(s) of these oxygen-binding proteins. We report the immunodetection and immunolocalization of ns-Hbs in rice (Oryza sativa L.) by Western blotting and in situ confocal laser scanning techniques. Ns-Hbs were detected in soluble extracts of different tissues from the developing rice seedling by immunoblotting. Levels of ns-Hbs increased in the germinating seed for the first six days following imbibition and remained relatively constant thereafter. In contrast, ns-Hb levels decreased during leaf maturation. Roots and mesocotyls contained detectable, but low levels of ns-Hbs. Split-seed experiments revealed that ns-Hbs are synthesized de novo during seed germination and are expressed in the absence of any signal originating from the embryo. Immunolocalization of ns-Hbs by con- focal microscopy indicated the presence of ns-Hbs primarily in differentiated and differentiating cell types of the developing seedling, such as the aleurone, scutellum, root cap cells, sclerenchyma, and tracheary elements. To our knowledge, this is the first report of the specific cellular localization of these proteins during seedling development

Approximate probabilistic verification of hybrid systems

Hybrid systems whose mode dynamics are governed by non-linear ordinary differential equations (ODEs) are often a natural model for biological processes. However such models are difficult to analyze. To address this, we develop a probabilistic analysis method by approximating the mode transitions as stochastic events. We assume that the probability of making a mode transition is proportional to the measure of the set of pairs of time points and value states at which the mode transition is enabled. To ensure a sound mathematical basis, we impose a natural continuity property on the non-linear ODEs. We also assume that the states of the system are observed at discrete time points but that the mode transitions may take place at any time between two successive discrete time points. This leads to a discrete time Markov chain as a probabilistic approximation of the hybrid system. We then show that for BLTL (bounded linear time temporal logic) specifications the hybrid system meets a specification iff its Markov chain approximation meets the same specification with probability $1$. Based on this, we formulate a sequential hypothesis testing procedure for verifying -approximately- that the Markov chain meets a BLTL specification with high probability. Our case studies on cardiac cell dynamics and the circadian rhythm indicate that our scheme can be applied in a number of realistic settings

Nonsymbiotic hemoglobins in rice are synthesized during germination and in differentiating cell types

Nonsymbiotic hemoglobins (ns-Hbs) previously have been found in monocots and dicots; however, very little is known about the tissue and cell type localization as well as the physiological function(s) of these oxygen-binding proteins. We report the immunodetection and immunolocalization of ns-Hbs in rice (Oryza sativa L.) by Western blotting and in situ confocal laser scanning techniques. Ns-Hbs were detected in soluble extracts of different tissues from the developing rice seedling by immunoblotting. Levels of ns-Hbs increased in the germinating seed for the first six days following imbibition and remained relatively constant thereafter. In contrast, ns-Hb levels decreased during leaf maturation. Roots and mesocotyls contained detectable, but low levels of ns-Hbs. Split-seed experiments revealed that ns-Hbs are synthesized de novo during seed germination and are expressed in the absence of any signal originating from the embryo. Immunolocalization of ns-Hbs by con- focal microscopy indicated the presence of ns-Hbs primarily in differentiated and differentiating cell types of the developing seedling, such as the aleurone, scutellum, root cap cells, sclerenchyma, and tracheary elements. To our knowledge, this is the first report of the specific cellular localization of these proteins during seedling development

A canine model of Cohen syndrome: Trapped Neutrophil Syndrome

<p>Abstract</p> <p>Background</p> <p>Trapped Neutrophil Syndrome (TNS) is a common autosomal recessive neutropenia in Border collie dogs.</p> <p>Results</p> <p>We used a candidate gene approach and linkage analysis to show that the causative gene for TNS is <it>VPS13B</it>. We chose <it>VPS13B </it>as a candidate because of similarities in clinical signs between TNS and Cohen syndrome, in human, such as neutropenia and a typical facial dysmorphism. Linkage analysis using microsatellites close to <it>VPS13B </it>showed positive linkage of the region to TNS. We sequenced each of the 63 exons of <it>VPS13B </it>in affected and control dogs and found that the causative mutation in Border collies is a 4 bp deletion in exon 19 of the largest transcript that results in premature truncation of the protein. Cohen syndrome patients present with mental retardation in 99% of cases, but learning disabilities featured in less than half of TNS affected dogs. It has been implied that loss of the alternate transcript of <it>VPS13B </it>in the human brain utilising an alternate exon, 28, may cause mental retardation. Mice cannot be used to test this hypothesis as they do not express the alternate exon. We show that dogs do express alternate transcripts in the brain utilising an alternate exon homologous to human exon 28.</p> <p>Conclusion</p> <p>Dogs can be used as a model organism to explore the function of the alternately spliced transcript of VPS13B in the brain. TNS in Border collies is the first animal model for Cohen syndrome and can be used to study the disease aetiology.</p