Taxonomic status and phylogenetic relationships of Marmosa agilis peruana Tate, 1931 (Didelphimorphia: Didelphidae), with comments on the morphological variation of Gracilinanus from central-western Brazil

The marsupials of the family Didelphidae went through profound taxonomic rearrangements in recent decades, mainly related to an increase in the number of specimens deposited in scientific collections and the inclusion of molecular data in systematic analyses, resulting in better resolved phylogenies and taxa delimitation. Analyses of a large series of the gracile mouse opossum Gracilinanus agilis, including types and complementary material, recovered specimens assignable to Marmosa agilis peruana Tate, 1931 as a monophyletic group that is diagnosable by unique morphological, morphometric and molecular datasets, meriting its recognition as a full species. Here we provide an emended diagnosis, description and comparisons with congeners for G. peruanus. The former species differs from the latter by the dull reddish dorsal pelage, smaller general size, position of the maxillary fenestrae, presence of accessory cusps in upper canines, and morphology of the alisphenoid tympanic process. It ranges from central Peru to central Bolivia and western Brazil in the states of Rondônia and northwestern Mato Grosso, where it occurs in sympatry with G. agilis. Many collecting localities lie in areas with high diversity of non-volant small mammals and accelerated deforestation processes, highlighting its importance in terms of biogeographic studies and conservation policies. © 2014 The Linnean Society of London

Rural area of the Brazilian Pantanal wetlands associated with the occurrence of anti-Leishmania spp. antibodies in dogs

Neste trabalho foi realizada uma avaliação sobre a presença de anticorpos anti-Leishmania infantum chagasi em cães domésticos das áreas urbanas e rurais da região do Pantanal brasileiro usando técnicas sorológicas. Um total de 429 cães foram amostrados em três áreas do bioma do Pantanal, incluindo os municípios de Poconé, Santo Antônio de Leverger e Barão de Melgaço, em Mato Grosso, e o município de Corumbá, em Mato Grosso do Sul. A reação de imunofluorescência indireta (RIFI) foi utilizada para detectar anticorpos (ponto de corte de 40) de Leishmania infantum chagasi como antígeno. Devido à possibilidade de reação cruzada entre as espécies do gênero Leishmania, as amostras positivas na RIFI para L. infantum chagasi foram também avaliadas na RIFI utilizando L. amazonensis e L. braziliensis como antígenos. As amostras positivas na RIFI para L. infantum chagasi foram avaliadas utilizando o ensaio de imunoadsorção ligado à enzima (ELISA). Os resultados mostraram a presença de anticorpos contra L. infantum chagasi em 23 (5,36%; IC 95%: 3,50% -8,05%) cães e pelo menos um cão soro-reativo foi encontrado em todos os municípios avaliados neste estudo. Os títulos de anticorpos variaram de 40 a 5.120 e todas as amostras positivas na RIFI foram positivas no ELISA. Entre os 23 cães positivos, nove também reagiram para L. amazonensis e L. braziliensis. A ocorrência de anticorpos anti-L. infantum chagasi em cães foi maior nas áreas rurais (7,06%) do que nas áreas urbanas (2,50%) (P < 0,05). Com base neste estudo, concluímos que cães de áreas rurais do Pantanal tiveram contato com espécies de Leishmania, o que é uma informação relevante, dada a sua importância para a saúde pública.An evaluation was made of the presence of anti-Leishmania infantum chagasi antibodies in domestic dogs from the urban and rural areas of Brazil’s Pantanal wetland region using serological techniques. A total of 429 dogs were sampled in three areas of the Pantanal biome, including the municipalities of Poconé, Santo Antônio de Leverger, and Barão de Melgaço, in the state of Mato Grosso, and in the municipality of Corumbá, in the state of Mato Grosso do Sul. The immunofluorescence assay (IFA) was used to detect antibodies (cut-off point 40) using Leishmania infantum chagasi antigen. Because of the possibility of cross-reactivity between species of the genus Leishmania, samples that were positive in the IFA against L. infantum chagasi were also tested by IFA in the same conditions, using L. amazonensis and L. braziliensis antigens. IFA-positive samples to L. infantum chagasi were also evaluated using Enzyme-Linked Immunosorbent Assay (ELISA). The results showed the presence of antibodies against L. infantum chagasi in 23 (5.36%; 95% CI: 3.50%-8.05%) dogs and at least one seroreactive dog was found in each of the municipalities evaluated in this study. Antibody titers ranged from 40 to 5,120, and all IFA positive samples were positive in the ELISA. Among the 23 positive dogs, nine were also were seroreactive for L. amazonensis and L. braziliensis antigens. The occurrence of anti- L. infantum chagasi antibodies in dogs was higher in rural areas (7.06%) than in urban areas (2.50%) (P < 0.05). Based on this study, we concluded that dogs from rural areas of the Pantanal wetlands were in contact with Leishmania species, which is relevant information given their importance to public health

Phylogenetic relationships, distribution, and conservation of Roosmalens’ dwarf porcupine, Coendou roosmalenorum Voss & da Silva, 2001 (Rodentia, Erethizontidae)

The New World porcupines of the genus Coendou comprise 16 species of arboreal nocturnal rodents. Some of these species are poorly known and have not been included in phylogenetic analyses. Based on recently collected specimens with associated tissue from the Brazilian Amazonia, we investigate the distribution and phylogenetic relationships of Roosmalens’ dwarf porcupine, Coendou roosmalenorum, using an integrative approach using mitochondrial gene sequences and morphological data from new specimens and localities. Our results recovered C. roosmalenorum in the subgenus Caaporamys. However, analyses of our molecular and combined datasets produced different topologies. The new record shows the presence of C. roosmalenorum 480 km to the southeast of the Rio Madeira and 95 km away from Rio Juruena in Mato Grosso state, indicating a wider distribution in southern Amazonia than suspected. All known records of C. roosmalenorum are in the Madeira biogeographical province, to which it might be endemic

Phylogenetic relationships, distribution, and conservation of Roosmalens’ dwarf porcupine, Coendou roosmalenorum Voss & da Silva, 2001 (Rodentia, Erethizontidae)

The New World porcupines of the genus Coendou comprise 16 species of arboreal nocturnal rodents. Some of these species are poorly known and have not been included in phylogenetic analyses. Based on recently collected specimens with associated tissue from the Brazilian Amazonia, we investigate the distribution and phylogenetic relationships of Roosmalens’ dwarf porcupine, Coendou roosmalenorum, using an integrative approach using mitochondrial gene sequences and morphological data from new specimens and localities. Our results recovered C. roosmalenorum in the subgenus Caaporamys. However, analyses of our molecular and combined datasets produced different topologies. The new record shows the presence of C. roosmalenorum 480 km to the southeast of the Rio Madeira and 95 km away from Rio Juruena in Mato Grosso state, indicating a wider distribution in southern Amazonia than suspected. All known records of C. roosmalenorum are in the Madeira biogeographical province, to which it might be endemic

Supplementary material 4 from: Menezes FH, Semedo TBF, Saldanha J, Garbino GST, Fernandes-Ferreira H, Cordeiro-Estrela P, da Costa IR (2023) Phylogenetic relationships, distribution, and conservation of Roosmalens' dwarf porcupine, Coendou roosmalenorum Voss & da Silva, 2001 (Rodentia, Erethizontidae). ZooKeys 1179: 139-155. https://doi.org/10.3897/zookeys.1179.108766

Erethizontid cytochrome b sequences utilized in phylogenetic analyse

Supplementary material 3 from: Menezes FH, Semedo TBF, Saldanha J, Garbino GST, Fernandes-Ferreira H, Cordeiro-Estrela P, da Costa IR (2023) Phylogenetic relationships, distribution, and conservation of Roosmalens' dwarf porcupine, Coendou roosmalenorum Voss & da Silva, 2001 (Rodentia, Erethizontidae). ZooKeys 1179: 139-155. https://doi.org/10.3897/zookeys.1179.108766

Dataset

BIODIVERSITY IN URBAN GREEN SPACE: A CASE STUDY IN THE NEOTROPICS

BIODIVERSIDADE EM ESPAÇO VERDE URBANO: ESTUDO DE CASO EM REGIÃO NEOTROPICALÁreas verdes tornam-se importantes para a conservação da biodiversidade animal e vegetal à medida que áreas urbanas crescem e o ambiente natural torna-se fragmentado. O objetivo deste estudo foi identificar a ocorrência de espécies de animais e plantas em uma área verde circundada por indústrias em Cuiabá, MT, Brasil. Nós amostramos 142 espécies de plantas, mamíferos, répteis e aves. Quatro espécies de animais eram introduzidas e uma era migrante sazonal do Hemisfério Norte. A ocorrência de espécies tais como Pistia stratiotes, Curatella americana, Eupetomena macroura e Ortalis canicollis indicou Cuiabá como um ecótono de Cerrado e Pantanal. Assim, existe importância ecológica da área de estudo por abrigar vasta biodiversidade dentro de 30 hectares circundados por indústrias. Cuiabá está expandindo áreas para moradia e comércio, o que pode aumentar a perda de espaços verdes e biodiversidade. Não existe manejo público para cuidar da área de estudo como um espaço para a conservação da biodiversidade e oportunidades recreativas.Palavras-chave: conservação, ecótono, áreas protegidas. ABSTRACT Green areas have become important for biodiversity conservation due to the increase in urban areas and to the fragmentation of natural environments. Our objective was to identify animal and plant species occurrence in a green area surrounded by industries in the county of Cuiabá MT Brazil. We sampled 142 species of plant, mammals, reptiles and birds. Four animal species had been introduced and one species comprised seasonal migration from the northern hemisphere. Species occurrence, such as Pistia stratiotes, Curatella americana, Eupetomena macroura and Ortalis canicollis indicated Cuiabá as an ecotone of the Cerrado and the Pantanal. There is, consequently, an ecological importance of the study area for harboring vast biodiversity within a 30-hectare area surrounded by industries. Cuiabá features expansion areas for housing development and commerce which trigger increase in green space and biodiversity losses. No public administration exists for the care for the study area as a biodiversity conservation space and recreation.Keywords: conservation, ecotone, protected areas. DOI: http://dx.doi.org/10.5935/2318-7670.v05n05a0

Unveiling hidden diversity of <i>Oecomys</i> (Rodentia: Cricetidae) from Brazilian Central Amazonia: description of a new species and new lineages

The arboreal rice rat of the genus Oecomys Thomas, 1906 is one of the most speciose genera of the subfamily Sigmodontinae, with 19 species currently recognized and occurring from eastern Panama to northern Argentina, Paraguay, and in northern, central and eastern Brazil. Herein we describe a new species using an integrative approach based on molecular, morphological, and morphometric data. We used in our assessment recently collected specimens from the states of Pará and Rondônia, one of the most deforested regions in Brazil. We examined 51 specimens of Oecomys from museum collections including name-bearing types from most of the distributional range of the genus. We also sequenced 32 specimens of Oecomys, and for the molecular analyses, we used the mitochondrial marker Cytochrome b and the nuclear marker intron 7 of β-fibrinogen. Our mitochondrial marker results recovered a strongly supported clade composed of two divergent clades (3.78%), one including lineages of O. bicolor and O. cleberi, and the other clade representing the new species. The topology of concatenated mitochondrial and nuclear data also recovered Oecomys sp. nov. as a sister lineage of the O. bicolor and O. cleberi clade. Also, both markers recovered new lineages from the O. bicolor and O. cleberi species group. The new species can be discriminated from other Oecomys species by pelage colour and craniodental characters, such as absent or small mastoid fenestra, and the presence of alisphenoid strut, small subsquamosal fenestra, presence of sphenopalatine vacuities, and presence of accessory loph of M1 and M2 paracones. The new species occurs exclusively in the Rondônia centre of endemism, delimited by the rivers Amazon to the north, Tapajós to the east, and Madeira to the west. The description of this new Oecomys increases the diversity, and also contributes to elevate Amazonian Sigmodontinae species richness and endemism in this still poorly known biome. http://zoobank.org/urn:lsid:zoobank.org:7477D37A-4D02-443F-B0FB-149379BEDE92</p