Orbital Period Determinations for Four SMC Be/X-ray Binaries

We present an optical and X-ray study of four Be/X-ray binaries located in the Small Magellanic Cloud (SMC). OGLE I-band data of up to 11 years of semi-continuous monitoring has been analysed for SMC X-2, SXP172 and SXP202B, providing both a measurement of the orbital period (Porb = 18.62, 68.90, and 229.9 days for the pulsars respectively) and a detailed optical orbital profile for each pulsar. For SXP172 this has allowed a direct comparison of the optical and X-ray emission seen through regular RXTE monitoring, revealing that the X-ray outbursts precede the optical by around 7 days. Recent X-ray studies by XMM-Newton have identified a new source in the vicinity of SXP15.3 raising doubt on the identification of the optical counterpart to this X-ray pulsar. Here we present a discussion of the observations that led to the proposal of the original counterpart and a detailed optical analysis of the counterpart to the new X-ray source, identifying a 21.7 d periodicity in the OGLE I-band data. The optical characteristics of this star are consistent with that of a SMC Be/X-ray binary. However, this star was rejected as the counterpart to SXP15.3 in previous studies due to the lack of H{\alpha} emission.Comment: Accepted for publication in MNRAS, 11 pages, 17 figure

Rapid N_H changes in NGC 4151

We have analyzed the two longest (elapsed time > 3 days) BeppoSAX observations of the X-ray brightest Seyfert galaxy, NGC 4151, to search for spectral variability on time-scales from a few tens of ksec to years. We found in both cases highly significant spectral variability below ~ 6 keV down to the shortest time-scales investigated. These variations can be naturally explained in terms of variations in the low energy cut-off due to obscuring matter along the line of sight. If the cut-off is modeled by two neutral absorption components, one fully covering the source and the second covering only a fraction of the source, the shortest time-scale of variability of a few days constrains the location of the obscuring matter to within 3.4 X 10^4 Schwarzschild radii from the central X-ray source. This is consistent with the distance of the Broad Emission Line Region, as inferred from reverberation mapping, and difficult to reconcile with the parsec scale dusty molecular torus of Krolik & Begelman (1988). We have also explored a more complex absorption structure, namely the presence of an ionized absorber. Although the behaviour of the ionization parameter is nicely consistent with the expectations, the results are not completely satisfactory from the statistical point of view. The overall absorption during the 2001 December observation is lower than in all other historical observations with similar 2-10 keV flux. This suggests that absorption variability plays a crucial role in the observed flux variability of this source.Comment: Added references, corrected typos. 21 pages, 9 figures; accepted for publication in Monthly Notices of the Royal Astronomical Society Main Journa

The Orbital Solution and Spectral Classification of the High-Mass X-Ray Binary IGR J01054-7253 in the Small Magellanic Cloud

We present X-ray and optical data on the Be/X-ray binary (BeXRB) pulsar IGR J01054-7253 = SXP11.5 in the Small Magellanic Cloud (SMC). Rossi X-ray Timing Explorer (RXTE) observations of this source in a large X-ray outburst reveal an 11.483 +/- 0.002s pulse period and show both the accretion driven spin-up of the neutron star and the motion of the neutron star around the companion through Doppler shifting of the spin period. Model fits to these data suggest an orbital period of 36.3 +/- 0.4d and Pdot of (4.7 +/- 0.3) x 10^{-10} ss^{-1}. We present an orbital solution for this system, making it one of the best described BeXRB systems in the SMC. The observed pulse period, spin-up and X-ray luminosity of SXP11.5 in this outburst are found to agree with the predictions of neutron star accretion theory. Timing analysis of the long-term optical light curve reveals a periodicity of 36.70 +/- 0.03d, in agreement with the orbital period found from the model fit to the X-ray data. Using blue-end spectroscopic observations we determine the spectral type of the counterpart to be O9.5-B0 IV-V. This luminosity class is supported by the observed V-band magnitude. Using optical and near-infrared photometry and spectroscopy, we study the circumstellar environment of the counterpart in the months after the X-ray outburst.Comment: 12 pages, 13 figures and 3 tables. This paper has been accepted for publication in MNRA

An X-ray view of absorbed INTEGRAL AGN

Aims. We present a 0.2--200 keV broad-band study of absorbed AGN observed with INTEGRAL, XMM-Newton, Chandra and ASCA to investigate the continuum shape and the absorbing/reflecting medium properties. Methods. The sources are selected in the INTEGRAL AGN sample to have a 20--100 keV flux below 8$\times10^{-11}$ \flux (5 mCrab), and are characterized by a 2--10 keV flux in the range (0.8--10)$\times10^{-11}$ \flux. The good statistics allow us a detailed study of the intrinsic and reflected continuum components. In particular, the analysis performed on the combined broad-band spectra allow us to investigate the presence of Compton reflection features and high energy cut-off in these objects. Results. The column density of the absorbing gas establishes the Compton thin nature for three sources in which a measure of the absorption was still missing. The Compton thin nature of all the sources in this small sample is also confirmed by the diagnostic ratios F$x/F[OIII]. The Compton reflection components we measure, reflection continuum and iron line, are not immediately compatible with a scenario in which the absorbing and reflecting media are one and the same, i.e. the obscuring torus. A possible solution is that the absorption is more effective than reflection, e.g. under the hypothesis that the absorbing/reflecting medium is not uniform, like a clumpy torus, or that the source is observed through a torus with a very shallow opening angle. The high energy cut-off (a lower limit in two cases) is found in all sources of our sample and the range of values is in good agreement with that found in type 1 Seyfert galaxies. At lower energies there is clear evidence of a soft component (reproduced with a thermal and/or scattering model), in six objects.Comment: Accepted for publication in Astronomy and Astrophysic

Multiwavelength Properties of the X-ray Sources in the Groth-Westphal Strip Field

We summarize the multiwavelength properties of X-ray sources detected in the 80 ks XMM-Newton observation of the Groth-Westphal Strip. We find 23 XMM-Newton sources within the WFPC2 fields. Ten spectroscopic redshifts are available from the DEEP and CFRS projects and 4 of these show broad Mg II emission (type 1 AGNs). Two of those without any broad lines, nevertheless, have [NeV] emission which is an unambiguous signature of AGN activity, one of which is a narrow-line Seyfert 1 and the other a type 2 AGN. We have made near-infrared (NIR) spectroscopic observations using the Subaru OHS/CISCO spectrometer for five of the X-ray sources for which we found no indication of an AGN activity in the optical spectrum. We have detected H-alpha+[NII] emission in four of them. A broad H-alpha component and/or a large [NII]/H-alpha ratio is seen, suggestive of AGN activity. Nineteen sources have been detected in the Ks band and four of these are extremely red objects (I814-Ks>4). The optical counterparts for the majority of the X-ray sources are bulge-dominated with colors consistent with evolving elliptical galaxies, with starburst/AGN contamination. Assuming that the known local relations among the bulge luminosity,central velocity dispersion, and the mass of the central blackhole hold at about z=1, the AGN bolometric luminosity to Eddington luminosity ratio ranges from 0.3% to 10%. (abridged)Comment: 18 pages, 6 figures, accepted for publication in Astronomical Journa

INTEGRAL deep observations of the Small Magellanic Cloud

Deep observations of the Small Magellanic Cloud (SMC) and region were carried out in the hard X-ray band by the INTEGRAL observatory in 2008-2009. The field of view of the instrument permitted simultaneous coverage of the entire SMC and the eastern end of the Magellanic Bridge. In total, INTEGRAL detected seven sources in the SMC and five in the Magellanic Bridge; the majority of the sources were previously unknown systems. Several of the new sources were detected undergoing bright X- ray outbursts and all the sources exhibited transient behaviour except the supergiant system SMC X-1. They are all thought to be High Mass X-ray Binary (HMXB) systems in which the compact object is a neutron star.Comment: 7 pages, 10 figures Accepted for publication in MNRA

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-seq and ESTs

The reference annotations made for a genome sequence provide the framework for all subsequent analyses of the genome. Correct annotation is particularly important when interpreting the results of RNA-seq experiments where short sequence reads are mapped against the genome and assigned to genes according to the annotation. Inconsistencies in annotations between the reference and the experimental system can lead to incorrect interpretation of the effect on RNA expression of an experimental treatment or mutation in the system under study. Until recently, the genome-wide annotation of 3-prime untranslated regions received less attention than coding regions and the delineation of intron/exon boundaries. In this paper, data produced for samples in Human, Chicken and A. thaliana by the novel single-molecule, strand-specific, Direct RNA Sequencing technology from Helicos Biosciences which locates 3-prime polyadenylation sites to within +/- 2 nt, were combined with archival EST and RNA-Seq data. Nine examples are illustrated where this combination of data allowed: (1) gene and 3-prime UTR re-annotation (including extension of one 3-prime UTR by 5.9 kb); (2) disentangling of gene expression in complex regions; (3) clearer interpretation of small RNA expression and (4) identification of novel genes. While the specific examples displayed here may become obsolete as genome sequences and their annotations are refined, the principles laid out in this paper will be of general use both to those annotating genomes and those seeking to interpret existing publically available annotations in the context of their own experimental dataComment: 44 pages, 9 figure