The INRIA-LIM-VocR and AXES submissions to Trecvid 2014 Multimedia Event Detection

-This paper describes our participation to the 2014 edition of the TrecVid Multimedia Event Detection task. Our system is based on a collection of local visual and audio descriptors, which are aggregated to global descriptors, one for each type of low-level descriptor, using Fisher vectors. Besides these features, we use two features based on convolutional networks: one for the visual channel, and one for the audio channel. Additional high-level featuresare extracted using ASR and OCR features. Finally, we used mid-level attribute features based on object and action detectors trained on external datasets. Our two submissions (INRIA-LIM-VocR and AXES) are identical interms of all the components, except for the ASR system that is used. We present an overview of the features andthe classification techniques, and experimentally evaluate our system on TrecVid MED 2011 data

Observing the prompt emission of gamma-ray bursts

Gamma-ray bursts (GRBs) were first detected thanks to their prompt emission, which was the only information available for decades. In 2010, while the high-energy prompt emission remains the main tool for the detection and the first localization of GRB sources, our understanding of this crucial phase of GRBs has made great progress. We discuss some recent advances in this field, like the occasional detection of the prompt emission at all wavelengths, from optical to GeV; the existence of sub-luminous GRBs; the attempts to standardize GRBs; and the possible detection of polarization in two very bright GRBs. Despite these advances, tantalizing observational and theoretical challenges still exist, concerning the detection of the faintest GRBs, the panchromatic observation of GRBs from their very beginning, the origin of the prompt emission, or the understanding of the physics at work during this phase. Significant progress on this last topic is expected with SVOM thanks to the observation of dozens of GRBs from optical to MeV during the burst itself, and the measure of the redshift for the majority of them. SVOM will also change our view of the prompt GRB phase in another way. Within a few years, the sensitivity of sky surveys at optical and radio frequencies, and outside the electromagnetic domain in gravitational waves or neutrinos, will allow them to detect several new types of transient signals, and SVOM will be uniquely suited to identify which of these transients are associated with GRBs. This radically novel look at GRBs may elucidate the complex physics producing these bright flashes.Comment: To appear in a special issue of Comptes Rendus Physique "GRB studies in the SVOM era", Eds. F. Daigne, G. Dubus. 15 pages 9 figure

Clinicians' use of breast cancer risk assessment tools according to their perceived importance of breast cancer risk factors: an international survey.

The BOADICEA breast cancer (BC) risk assessment model and its associated Web Application v3 (BWA) tool are being extended to incorporate additional genetic and non-genetic BC risk factors. From an online survey through the BOADICEA website and UK, Dutch, French and Swedish national genetic societies, we explored the relationships between the usage frequencies of the BWA and six other common BC risk assessment tools and respondents' perceived importance of BC risk factors. Respondents (N = 443) varied in age, country and clinical seniority but comprised mainly genetics health professionals (82%) and BWA users (93%). Oncology professionals perceived reproductive, hormonal (exogenous) and lifestyle BC risk factors as more important in BC risk assessment compared to genetics professionals (p values < 0.05 to 0.0001). BWA was used more frequently by respondents who gave high weight to breast tumour pathology and low weight to personal BC history as BC risk factors. BWA use was positively related to the weight given to hormonal BC risk factors. The importance attributed to lifestyle and BMI BC risk factors was not associated with the use of BWA or any of the other tools. Next version of the BWA encompassing additional BC risk factors will facilitate more comprehensive BC risk assessment in genetics and oncology practice

Late Quaternary co-seismic sedimentation in the Sea of Marmara's deep basins

25 pages, 15 figures, 1 tableauInternational audienceThe deep, northern, part of the Sea of Marmara (northwestern Turkey) is composed of several aligned, actively subsiding, basins, which are the direct structural and morphological expression of the North Anatolian Fault's northern branch. The last 20 kyr of their sedimentary fill (lacustrine before 12 kyr BP) have been investigated through giant piston coring onboard R/V MARION-DUFRESNE (MARMACORE Cruise, 2001) and chirp subbottom profiler onboard R/V ATALANTE during MARMARASCARPS Cruise (2002). Especially during the lacustrine stage, the infilling of the deep basins (Tekirda?, Central, Kumburgaz, and Çinarcic Basins; up to 1250 m depth) was dominated by turbidites (with coarse mixed siliciclastic and bioclastic basal part), intercalated in “hemipelagic-type” finegrained calcareous and slightly siliceous clays. Often – especially in the thickest ones – the turbidites show strong segregation and a sharp boundary between coarse part and suspendedload part. In the Central Basin, 8 m of a unique sedimentary event include a 5 to 8m-thick “homogenite” well imaged on seismic profiles. The latter is interpreted as related to a major – possibly triggered - tsunami effect, as described in the Eastern Mediterranean by Kastens and Cita (1981). In the marine (Holocene) upper part of the sedimentary fill, repeated to-and-from structures, affecting silt or fine sand, are evidencing seiche-like effects and, thus, earthquake triggering. Detailed correlations between two deep coring sites (1250 and 1200 m) indicate more than 100 % overthickening in the deepest one; this implies specific processes of distribution of terrigenous input by dense hyperpycnal currents (high kinetic energy, seiche effect, complex reflections on steep slopes). The peculiar sedimentary infilling of the Sea of Marmara's Central Basin (and, by extrapolation, of the whole set) is tentatively interpreted as a direct consequence of the strong seismic activity; the imprint of the latter is more obvious prior to the base of the Holocene, as environmental conditions favoured marginal accumulation (especially on the southern shelf) of large amounts of erosion products available for mass wasting

Comparison of temporal evolution of computed tomography imaging features in COVID-19 and influenza infections in a multicenter cohort study

Purpose To compare temporal evolution of imaging features of coronavirus disease 2019 (COVID-19) and influenza in computed tomography and evaluate their predictive value for distinction. Methods In this retrospective, multicenter study 179 CT examinations of 52 COVID-19 and 44 influenza critically ill patients were included. Lung involvement, main pattern (ground glass opacity, crazy paving, consolidation) and additional lung and chest findings were evaluated by two independent observers. Additional findings and clinical data were compared patient-wise. A decision tree analysis was performed to identify imaging features with predictive value in distinguishing both entities. Results In contrast to influenza patients, lung involvement remains high in COVID-19 patients > 14 days after the diagnosis. The predominant pattern in COVID-19 evolves from ground glass at the beginning to consolidation in later disease. In influenza there is more consolidation at the beginning and overall less ground glass opacity (p = 0.002). Decision tree analysis yielded the following: Earlier in disease course, pleural effusion is a typical feature of influenza (p = 0.007) whereas ground glass opacities indicate COVID-19 (p = 0.04). In later disease, particularly more lung involvement (p < 0.001), but also less pleural (p = 0.005) and pericardial (p = 0.003) effusion favor COVID-19 over influenza. Regardless of time point, less lung involvement (p < 0.001), tree-in-bud (p = 0.002) and pericardial effusion (p = 0.01) make influenza more likely than COVID-19. Conclusions This study identified differences in temporal evolution of imaging features between COVID-19 and influenza. These findings may help to distinguish both diseases in critically ill patients when laboratory findings are delayed or inconclusive

Assessment of Health-Related Quality of Life after TBI: Comparison of a Disease-Specific (QOLIBRI) with a Generic (SF-36) Instrument

Psychosocial, emotional, and physical problems can emerge after traumatic brain njury (TBI), potentially impacting health-related quality of life (HRQoL). Until now, however, neither the discriminatory power of disease-specific (QOLIBRI) and generic (SF-36) HRQoL nor their correlates have been compared in detail. These aspects as well as some psychometric item characteristics were studied in a sample of 795 TBI survivors. The Shannon H耠 index absolute informativity, as an indicator of an instrument’s power to differentiate between individualswithin a specific group or health state,was investigated. Psychometric performance of the two instruments was predominantly good, generally higher, and more homogenous for the QOLIBRI than for the SF-36 subscales. Notably, the SF-36 “Role Physical,” “Role Emotional,” and “Social Functioning” subscales showed less satisfactory discriminatory power than all other dimensions or the sum scores of both instruments. The absolute informativity of disease-specific as well as generic HRQoL instruments concerning the different groups defined by different correlates differed significantly.When the focus is on how a certain subscale or sum score differentiates between individuals in one specific dimension/health state, the QOLIBRI can be recommended as the preferable instrument.Psychosocial, emotional, and physical problems can emerge after traumatic brain injury (TBI), potentially impacting health-related quality of life (HRQoL). Until now, however, neither the discriminatory power of disease-specific (QOLIBRI) and generic (SF-36) HRQoL nor their correlates have been compared in detail. These aspects as well as some psychometric item characteristics were studied in a sample of 795 TBI survivors. The Shannon H耠 index absolute informativity, as an indicator of an instrument’s power to differentiate between individualswithin a specific group or health state,was investigated. Psychometric performance of the two instruments was predominantly good, generally higher, and more homogenous for the QOLIBRI than for the SF-36 subscales. Notably, the SF-36 “Role Physical,” “Role Emotional,” and “Social Functioning” subscales showed less satisfactory discriminatory power than all other dimensions or the sum scores of both instruments. The absolute informativity of disease-specific as well as generic HRQoL instruments concerning the different groups defined by different correlates differed significantly.When the focus is on how a certain subscale or sum score differentiates between individuals in one specific dimension/health state, the QOLIBRI can be recommended as the preferable instrument.Peer reviewe

Machine learning models for diagnosis and risk prediction in eating disorders, depression, and alcohol use disorder

This study uses machine learning models to uncover diagnostic and risk prediction markers for eating disorders (EDs), major depressive disorder (MDD), and alcohol use disorder (AUD). Utilizing case-control samples (ages 18-25 years) and a longitudinal population-based sample (n=1,851), the models, incorporating diverse data domains, achieved high accuracy in classifying EDs, MDD, and AUD from healthy controls. The area under the receiver operating characteristic curves (AUC-ROC [95% CI]) reached 0.92 [0.86-0.97] for AN and 0.91 [0.85-0.96] for BN, without relying on body mass index as a predictor. The classification accuracies for MDD (0.91 [0.88-0.94]) and AUD (0.80 [0.74-0.85]) were also high. Each data domain emerged as accurate classifiers individually, with personality distinguishing AN, BN, and their controls with AUC-ROCs ranging from 0.77 to 0.89. The models demonstrated high transdiagnostic potential, as those trained for EDs were also accurate in classifying AUD and MDD from healthy controls, and vice versa (AUC-ROCs, 0.75-0.93). Shared predictors, such as neuroticism, hopelessness, and symptoms of attention-deficit/hyperactivity disorder, were identified as reliable classifiers. For risk prediction in the longitudinal population sample, the models exhibited moderate performance (AUC-ROCs, 0.64-0.71), highlighting the potential of combining multi-domain data for precise diagnostic and risk prediction applications in psychiatry.</p

Prominent and Persistent Extraneural Infection in Human PrP Transgenic Mice Infected with Variant CJD

Background. The evolution of the variant Creutzfeldt-Jakob disease (vCJD) epidemic is hazardous to predict due to uncertainty in ascertaining the prevalence of infection and because the disease might remain asymptomatic or produce an alternate, sporadic-like phenotype. Methodology/Principal Findings. Transgenic mice were produced that overexpress human prion protein with methionine at codon 129, the only allele found so far in vCJD-affected patients. These mice were infected with prions derived from variant and sporadic CJD (sCJD) cases by intracerebral or intraperitoneal route, and transmission efficiency and strain phenotype were analyzed in brain and spleen. We showed that i) the main features of vCJD infection in humans, including a prominent involvement of the lymphoid tissues compared to that in sCJD infection were faithfully reproduced in such mice; ii) transmission of vCJD agent by intracerebral route could lead to the propagation of either vCJD or sCJD-like prion in the brain, whereas vCJD prion was invariably propagated in the spleen, iii) after peripheral exposure, inefficient neuroinvasion was observed, resulting in an asymptomatic infection with life-long persistence of vCJD prion in the spleen at stable and elevated levels. Conclusion/Significance. Our findings emphasize the possibility that human-to-human transmission of vCJD might produce alternative neuropathogical phenotypes and that lymphoid tissue examination of CJD cases classified as sporadic might reveal an infection by vCJD-type prions. They also provide evidence for the strong propensity of this agent to establish long-lasting, subclinical vCJD infection of lymphoreticular tissues, thus amplifying the risk for iatrogenic transmission