INT-Hi-C reveals distinct chromatin architecture in endosperm and leaf tissues of Arabidopsis

Higher-order chromatin structure undergoes striking changes in response to various developmental and environmental signals, causing distinct cell types to adopt specific chromatin organization. High throughput chromatin conformation capture (Hi-C) allows studying higher-order chromatin structure; however, this technique requires substantial amounts of starting material, which has limited the establishment of cell type-specific higher-order chromatin structure in plants. To overcome this limitation, we established a protocol that is applicable to a limited amount of nuclei by combining the INTACT (isolation of nuclei tagged in specific cell types) method and Hi-C (INT-Hi-C). Using this INT-Hi-C protocol, we generated Hi-C data from INTACT purified endosperm and leaf nuclei. Our INT-Hi-C data from leaf accurately reiterated chromatin interaction patterns derived from conventional leaf Hi-C data. We found that the higher-order chromatin organization of mixed leaf tissues and endosperm differs and that DNA methylation and repressive histone marks positively correlate with the chromatin compaction level. We furthermore found that self-looped interacting genes have increased expression in leaves and endosperm and that interacting intergenic regions negatively impact on gene expression in the endosperm. Last, we identified several imprinted genes involved in long-range and trans interactions exclusively in endosperm. Our study provides evidence that the endosperm adopts a distinct higher-order chromatin structure that differs from other cell types in plants and that chromatin interactions influence transcriptional activity

Ectopic application of the repressive histone modification H3K9me2 establishes post-zygotic reproductive isolation in Arabidopsis thaliana

Hybrid seed lethality as a consequence of interspecies or interploidy hybridizations is a major mechanism of reproductive isolation in plants. This mechanism is manifested in the endosperm, a dosage-sensitive tissue supporting embryo growth. Deregulated expression of imprinted genes such as ADMETOS (ADM) underpin the interploidy hybridization barrier in Arabidopsis thaliana; however, the mechanisms of their action remained unknown. In this study, we show that ADM interacts with the AT hook domain protein AHL10 and the SET domain-containing SU (VAR) 3-9 homolog SUVH9 and ectopically recruits the heterochromatic mark H3K9me2 to AT-rich transposable elements (TEs), causing deregulated expression of neighboring genes. Several hybrid incompatibility genes identified in Drosophila encode for dosage-sensitive heterochromatin-interacting proteins, which has led to the suggestion that hybrid incompatibilities evolve as a consequence of interspecies divergence of selfish DNA elements and their regulation. Our data show that imbalance of dosage-sensitive chromatin regulators underpins the barrier to interploidy hybridization in Arabidopsis, suggesting that reproductive isolation as a consequence of epigenetic regulation of TEs is a conserved feature in animals and plants

Immobilization-Stabilization of β-Glucosidase for Implementation of Intensified Hydrolysis of Cellobiose in Continuous Flow Reactors

Cellulose saccharification to glucose is an operation of paramount importance in the bioenergy sector and the chemical and food industries, while glucose is a critical platform chemical in the integrated biorefinery. Among the cellulose degrading enzymes, β-glucosidases are responsible for cellobiose hydrolysis, the final step in cellulose saccharification, which is usually the critical bottleneck for the whole cellulose saccharification process. The design of very active and stable β-glucosidase-based biocatalysts is a key strategy to implement an efficient saccharification process. Enzyme immobilization and reaction engineering are two fundamental tools for its understanding and implementation. Here, we have designed an immobilized-stabilized solid-supported β-glucosidase based on the glyoxyl immobilization chemistry applied in porous solid particles. The biocatalyst was stable at operational temperature and highly active, which allowed us to implement 25 °C as working temperature with a catalyst productivity of 109 mmol/min/gsupport. Cellobiose degradation was implemented in discontinuous stirred tank reactors, following which a simplified kinetic model was applied to assess the process limitations due to substrate and product inhibition. Finally, the reactive process was driven in a continuous flow fixed-bed reactor, achieving reaction intensification under mild operation conditions, reaching full cellobiose conversion of 34 g/L in a reaction time span of 20 min.Comunidad de MadridMINECODepto. de Ingeniería Química y de MaterialesFac. de Ciencias QuímicasTRUEpu

Deconstructing heterostyly: The evolutionary role of incompatibility system, pollinators, and floral architecture. Evolution 67

Darwin's early work on heterostyly and related style polymorphisms (the presence of two or three style morphs within a population) generated much interest to understand how precise interactions between ecological and genetic mechanisms influence the evolution of floral diversity. Here we tested three key hypotheses proposed to explain the evolution of heterostyly: (i) the presence of self-incompatibility; (ii) the role of pollinators in promoting dissasortative mating; and (iii) floral architecture, which restricts pollinators' movements and ensures more exact pollen deposition on their bodies. We combined data from experiments, field observations, and published studies to test whether evolution of style polymorphism in Narcissus is driven by the incompatibility system, pollinator guilds, or floral architecture, within a phylogenetic framework. Neither differences in pollinator environment nor the presence of genetic self-incompatibility were correlated with presence of style polymorphism. However, our results indicate that the evolution of style polymorphism was driven by the presence of a narrow and long floral tube. K E Y W O R D S : Evolutionary transitions, floral architecture, heterostyly, incompatibility system, pollinators. Heterostyly and related style polymorphisms have fascinated biologists since Darwin provided an evolutionary explanation of the mechanisms suggesting that they serve to promote outcrossing in hermaphroditic plants (Darwin 1877). Heterostyly is characterized by the presence of two (distyly) or three (tristyly) flower morphs with reciprocal displacement in the height of the stigmas and the anthers within a flower. Style dimorphism is a polymorphism related with heterostyly, where two stylar morphs exist without concomitant reciprocal variation in stamens. Evolutionary models suggest that stylar dimorphism is an intermediate step in the transition from style monomorphism to distyl

The Effect of the Spanish Nuclear Phase-out on the Electricity Market

Portugal and Spain are integrated into what is known as the Iberian Electricity Market. Spain participates in this market with significant contribution of energy produced by nuclear plants. In 2022, nuclear energy accounted for 22 % of the total energy generated in Spain. Nuclear power plants sell their energy largely through bilateral contracts, and approximately 20 % is offered in the day-ahead electricity market. By 2035, Spain will phase-out nuclear power producing a structural change of its generation mix. In this paper, we investigate the effect on the day-ahead Iberian electricity market that the gradual removal of nuclear power plants will have on the daily electricity market. The methodology is based on a ceteris paribus approach, where generation conditions are modified by removing nuclear plants and keeping the rest of the variables constant (demand and other generation). Under these conditions, the market is reproduced, estimating how electricity prices change in the day-ahead electricity market. To evaluate the market electricity prices under this new scenario with a total or a partial elimination of nuclear energy generation, it is necessary to use a market model. The existing literature shows various approaches to replicate the electricity market, among which are agent-base modelling, optimization algorithms, artificial intelligence techniques or metaheuristic merit-order methods. Our approach is based on the latter methods, by using actual generation and demand data, the new market generation and demand curves are reconstructed and the new clearing price is obtained. For the most conservative scenario, the results show a price increase of more than 5 % for the first 6 months of 2021. The reason for this increase is that nuclear generation participates in the market by offering its energy at prices close to zero. When this generation is withdrawn, there is a shift to the left of the hourly generation curve producing a new market equilibrium at a point of higher price and lower energy

Profitability Assessment of Windfarm Overplanting in Spain

The efforts made by European institutions to decarbonise the electricity system over the last decade have led Spain to become the fifth country in the world in terms of wind power plant capacity in 2021. This major achievement is still far from being able to contain and limit CO2 emissions. By 2030, it is expected that, together with photovoltaic energy, Spain will reach 74 % of renewable generation in its electricity system. Wind technology is currently very mature in onshore wind farms and its relatively low cost makes this technology attractive to investors. However, the best wind sites were the first places to be occupied by the first turbine generations. On the other hand, newer wind farms occupy sites with less wind resource but have more efficient turbines. To improve the profitability of the wind farm and increase its production, the feasibility of other alternatives such as overplanting or storage is beginning to be investigated. Overplanting aims to optimise the use of the transmission system by increasing wind capacity above the transmission capacity limit. In this work, we measure the profitability of an overplanting strategy by quantifying the parameters that make profitable the investment. The developed model optimised the production of energy taking into account technical and financial parameters in order to cover a wide range of situations. We analysed the case of a specific site with 25 2 MW turbines with the Python tool PyWake. The results obtained show that for each new turbine the annual energy produced (AEP) grows by around 3.87 GWh per turbine added (a cut of 1.69 GWh due to congestion of the transmission system). The study shows improvements in profitability when the electricity price exceeds 70 €/MWh

Gene expression changes in mononuclear cells from patients with metabolic syndrome after acute intake of phenol-rich virgin olive oil

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.Abstract Background Previous studies have shown that acute intake of high-phenol virgin olive oil reduces pro-inflammatory, pro-oxidant and pro-thrombotic markers compared with low phenols virgin olive oil, but it still remains unclear whether effects attributed to its phenolic fraction are exerted at transcriptional level in vivo. To achieve this goal, we aimed at identifying expression changes in genes which could be mediated by virgin olive oil phenol compounds in the human. Results Postprandial gene expression microarray analysis was performed on peripheral blood mononuclear cells during postprandial period. Two virgin olive oil-based breakfasts with high (398 ppm) and low (70 ppm) content of phenolic compounds were administered to 20 patients suffering from metabolic syndrome following a double-blinded, randomized, crossover design. To eliminate the potential effect that might exist in their usual dietary habits, all subjects followed a similar low-fat, carbohydrate rich diet during the study period. Microarray analysis identified 98 differentially expressed genes (79 underexpressed and 19 overexpressed) when comparing the intake of phenol-rich olive oil with low-phenol olive oil. Many of these genes seem linked to obesity, dyslipemia and type 2 diabetes mellitus. Among these, several genes seem involved in inflammatory processes mediated by transcription factor NF-κB, activator protein-1 transcription factor complex AP-1, cytokines, mitogen-activated protein kinases MAPKs or arachidonic acid pathways. Conclusion This study shows that intake of virgin olive oil based breakfast, which is rich in phenol compounds is able to repress in vivo expression of several pro-inflammatory genes, thereby switching activity of peripheral blood mononuclear cells to a less deleterious inflammatory profile. These results provide at least a partial molecular basis for reduced risk of cardiovascular disease observed in Mediterranean countries, where virgin olive oil represents a main source of dietary fat. Admittedly, other lifestyle factors are also likely to contribute to lowered risk of cardiovascular disease in this region.Published versio

Biodegradable polymers on cementitious materials

PTDC/EPH-PAT/4684/2014 IF/01054/2014/CP1224/CT0005 UID/QUI/50006/2019 UID/Multi/04378/2019 POCI-01-0145-FEDER-007728Nowadays the sustainability and safety requirements of structures inspire the study of new self healing materials and preventive repair methods on cementitious elements. To achieve this undertaking, this research replaces widely employed synthetic polymers by biodegradable ones as consolidants and water-repellents, and assesses the protection and consolidation effect of biopolymers (obtained by using waste biomass of mixed microbial cultures from polyhydroxyalkanoates production processes) as eco-friendly healing agents by analysing the water absorption of two kind of materials. The first group of samples are cement mortar specimens whose external surface has been treated with biopolymer products and subsequently evaluated by water drop absorption test. The second group of samples are cement mortar specimens formulated with biopolymer products included in its mixing water and later the waterproofing efficiency is analysed by capillary water absorption tests. The water absorption behaviour of both kind of samples shows a potential improvement of cementitious elements durability, since water absorption results have decreased for treated samples in comparison with untreated ones.authorsversionpublishe

Eco-friendly healing agents for recycled concrete

Abstract An innovative option to extend the service life of construction and building materials is the use of bio-healing agents. This study was focused on assessing the protection and consolidation effect of eco-friendly healing agents by analysing the water absorption of recycled concrete. A recycled concrete with 50% replacement of natural coarse aggregate by construction and demolition waste (CDW) aggregate and a similar recycled concrete in which, additionally, the Portland cement was replaced by recycled cement (with 25% ceramic waste) were biotreated by healing agents. These agents were obtained by using waste biomass of two different mixed microbial cultures from polyhydroxyalkanoates production processes. Results have shown that biotreatments decreased the water absorption significantly, more evident in concrete samples with both recycled cement and aggregates than on the other type of concrete. Resumen Una innovadora posibilidad planteada para prolongar la vida útil de los materiales de construcción y edificación es el uso de agentes bioreparadores. Este estudio se centró en la evaluación del efecto protector y consolidante de agentes reparadores y respetuosos con el medio ambiente mediante el análisis de la absorción de agua del hormigón reciclado. Un hormigón reciclado con sustitución del 50% de los áridos gruesos naturales por residuos de construcción y demolición (RCD) y un hormigón reciclado similar en el cual, además, se sustituyó el cemento convencional Portland por cemento reciclado (con 25% de residuo cerámico) fueron biotratados con agentes reparadores. Estos agentes se obtuvieron en el proceso de producción de polihidroxialcanoatos utilizando biomasa residual de dos cultivos microbianos mixtos diferentes. Los resultados mostraron que los biotratamientos disminuyen significativamente la absorción de agua del hormigón, siendo más eficaces en las muestras de hormigón que combinan cemento y árido reciclado que en el otro tipo de hormigón.authorsversionpublishe

On the Biomimetic Design of Agile-Robot Legs

The development of functional legged robots has encountered its limits in human-made actuation technology. This paper describes research on the biomimetic design of legs for agile quadrupeds. A biomimetic leg concept that extracts key principles from horse legs which are responsible for the agile and powerful locomotion of these animals is presented. The proposed biomimetic leg model defines the effective leg length, leg kinematics, limb mass distribution, actuator power, and elastic energy recovery as determinants of agile locomotion, and values for these five key elements are given. The transfer of the extracted principles to technological instantiations is analyzed in detail, considering the availability of current materials, structures and actuators. A real leg prototype has been developed following the biomimetic leg concept proposed. The actuation system is based on the hybrid use of series elasticity and magneto-rheological dampers which provides variable compliance for natural motion. From the experimental evaluation of this prototype, conclusions on the current technological barriers to achieve real functional legged robots to walk dynamically in agile locomotion are presented